{"id":"https://openalex.org/W4200249261","doi":"https://doi.org/10.1080/23802359.2021.2011447","title":"The whole chloroplast genome of Secale strictum subsp. kuprijanovii, a wild and perennial kinship to cultivated rye","display_name":"The whole chloroplast genome of Secale strictum subsp. kuprijanovii, a wild and perennial kinship to cultivated rye","publication_year":2021,"publication_date":"2021-12-23","ids":{"openalex":"https://openalex.org/W4200249261","doi":"https://doi.org/10.1080/23802359.2021.2011447","pmid":"https://pubmed.ncbi.nlm.nih.gov/34993330","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/8725948"},"language":"en","primary_location":{"id":"doi:10.1080/23802359.2021.2011447","doi":"https://doi.org/10.1080/23802359.2021.2011447","is_oa":true,"landing_page_url":"https://doi.org/10.1080/23802359.2021.2011447","pdf_url":"https://www.tandfonline.com/doi/pdf/10.1080/23802359.2021.2011447?needAccess=true","source":{"id":"https://openalex.org/S2764892991","display_name":"Mitochondrial DNA Part B","issn_l":"2380-2359","issn":["2380-2359"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","norway-1","poland-20","russia-white-list-4"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mitochondrial DNA Part B","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.tandfonline.com/doi/pdf/10.1080/23802359.2021.2011447?needAccess=true","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112843930","display_name":"Yuwen Ding","orcid":"https://orcid.org/0009-0006-8263-0672","observed_orcids":["https://orcid.org/0009-0006-8263-0672"]},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuwen Ding","raw_affiliation_strings":["Institute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056502974","display_name":"Yiyu Hu","orcid":"https://orcid.org/0000-0001-6608-4372","observed_orcids":["https://orcid.org/0000-0001-6608-4372"]},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiyu Hu","raw_affiliation_strings":["Institute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007314776","display_name":"Longjiang Fan","orcid":"https://orcid.org/0000-0003-4846-0500","observed_orcids":["https://orcid.org/0000-0003-4846-0500"]},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Longjiang Fan","raw_affiliation_strings":["Institute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004870483","display_name":"Qinjie Chu","orcid":"https://orcid.org/0000-0003-1234-3396","observed_orcids":["https://orcid.org/0000-0003-1234-3396"]},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qinjie Chu","raw_affiliation_strings":["Institute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5004870483"],"corresponding_institution_ids":["https://openalex.org/I76130692"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"7","issue":"1","first_page":"112","last_page":"114"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.3910999894142151,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.3910999894142151,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13168","display_name":"Plant Ecology and Taxonomy Studies","score":0.2410999983549118,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12568","display_name":"Plant Taxonomy and Phylogenetics","score":0.17970000207424164,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chloroplast-genome","display_name":"chloroplast genome","score":0.878000020980835},{"id":"https://openalex.org/keywords/rye","display_name":"rye","score":0.9599999785423279},{"id":"https://openalex.org/keywords/crop-wild-relatives","display_name":"crop wild relatives","score":0.4650000035762787},{"id":"https://openalex.org/keywords/germplasm-resources","display_name":"germplasm resources","score":0.878000020980835},{"id":"https://openalex.org/keywords/genome-structure","display_name":"genome structure","score":0.3930000066757202},{"id":"https://openalex.org/keywords/genome-annotation","display_name":"genome annotation","score":0.5929999947547913},{"id":"https://openalex.org/keywords/phylogenetic-analysis","display_name":"phylogenetic analysis","score":0.6340000033378601}],"concepts":[{"id":"https://openalex.org/C2778987702","wikidata":"https://www.wikidata.org/wiki/Q7215110","display_name":"Secale","level":2,"score":0.9055337905883789},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8819574117660522},{"id":"https://openalex.org/C2777461220","wikidata":"https://www.wikidata.org/wiki/Q589029","display_name":"Germplasm","level":2,"score":0.6873619556427002},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.603222131729126},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5849728584289551},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4740290939807892},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.44907739758491516},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3608224391937256}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1080/23802359.2021.2011447","doi":"https://doi.org/10.1080/23802359.2021.2011447","is_oa":true,"landing_page_url":"https://doi.org/10.1080/23802359.2021.2011447","pdf_url":"https://www.tandfonline.com/doi/pdf/10.1080/23802359.2021.2011447?needAccess=true","source":{"id":"https://openalex.org/S2764892991","display_name":"Mitochondrial DNA Part B","issn_l":"2380-2359","issn":["2380-2359"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","norway-1","poland-20","russia-white-list-4"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mitochondrial DNA Part B","raw_type":"journal-article"},{"id":"pmid:34993330","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34993330","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mitochondrial DNA. Part B, Resources","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8725948","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC8725948/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mitochondrial DNA B Resour","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:14306766a25747d79a3a31f9d4bd14d6","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/14306766a25747d79a3a31f9d4bd14d6","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Mitochondrial DNA. Part B. Resources, Vol 7, Iss 1, Pp 112-114 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1080/23802359.2021.2011447","doi":"https://doi.org/10.1080/23802359.2021.2011447","is_oa":true,"landing_page_url":"https://doi.org/10.1080/23802359.2021.2011447","pdf_url":"https://www.tandfonline.com/doi/pdf/10.1080/23802359.2021.2011447?needAccess=true","source":{"id":"https://openalex.org/S2764892991","display_name":"Mitochondrial DNA Part B","issn_l":"2380-2359","issn":["2380-2359"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","norway-1","poland-20","russia-white-list-4"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mitochondrial DNA Part B","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6735000014305115,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G6236433279","display_name":null,"funder_award_id":"LZ17C130001","funder_id":"https://openalex.org/F4320338464","funder_display_name":"Natural Science Foundation of Zhejiang Province"},{"id":"https://openalex.org/G8802379395","display_name":null,"funder_award_id":"31971865","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320338464","display_name":"Natural Science Foundation of Zhejiang Province","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4200249261.pdf"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1968458420","https://openalex.org/W2005793535","https://openalex.org/W2111647009","https://openalex.org/W2127774996","https://openalex.org/W2129796024","https://openalex.org/W2141420752","https://openalex.org/W2287584731","https://openalex.org/W2535995078","https://openalex.org/W2612261225","https://openalex.org/W2774232036","https://openalex.org/W2884571435","https://openalex.org/W2927961455","https://openalex.org/W3091213182"],"related_works":["https://openalex.org/W4281983352","https://openalex.org/W4362520675","https://openalex.org/W4416853068","https://openalex.org/W3138204333","https://openalex.org/W2916579692","https://openalex.org/W61714294","https://openalex.org/W1982557943","https://openalex.org/W4406499541","https://openalex.org/W2794116248","https://openalex.org/W2082097943"],"abstract_inverted_index":{"Secale":[0,19,126,134],"strictum":[1,127],"subsp.":[2,128,143],"kuprijanovii":[3,129,144],"is":[4,29,46,72],"a":[5,12,78,86,154],"perennial,":[6],"hermaphrodite":[7],"wild":[8],"rye":[9,164],"species":[10],"and":[11,43,54,94,118,165],"progenitor":[13],"of":[14,36,47,64,83,91,100,105,141,160],"the":[15,33,57,60,158,162],"modern":[16],"cultivated":[17,163],"rye,":[18],"cereale.":[20],"With":[21],"high":[22],"adaptive":[23],"capacity":[24],"in":[25,75],"stress":[26],"conditions,":[27],"it":[28],"valuable":[30],"for":[31,56,157],"enriching":[32],"germplasm":[34],"resources":[35],"rye.":[37],"Therefore,":[38],"to":[39],"elucidate":[40],"its":[41,151],"genetic":[42,155],"phylogenetic":[44],"relationship":[45,140],"great":[48],"importance.":[49],"We":[50],"hereby":[51],"sequenced,":[52],"assembled":[53],"presented":[55],"first":[58],"time":[59],"complete":[61],"chloroplast":[62],"genome":[63,71],"this":[65],"less":[66],"studied":[67],"species.":[68],"The":[69],"whole":[70],"137,079":[73],"bp":[74,93],"size,":[76],"including":[77,111],"large":[79],"single":[80,88],"copy":[81,89],"region":[82,90],"81,099":[84],"bp,":[85],"small":[87],"12,820":[92],"two":[95],"separated":[96],"inverted":[97],"repeat":[98],"regions":[99],"43,160":[101],"bp.":[102],"A":[103,136],"total":[104],"109":[106],"unique":[107],"genes":[108,117],"were":[109],"annotated,":[110],"67":[112],"protein-coding":[113],"genes,":[114],"38":[115],"tRNA":[116],"4":[119],"rRNA":[120],"genes.":[121],"Phylogenetic":[122],"analysis":[123],"showed":[124],"that":[125],"clustered":[130],"most":[131],"closely":[132],"with":[133,145],"cereal.":[135],"remarkably":[137],"close":[138],"evolutionary":[139],"S.strictum":[142],"various":[146],"wheat":[147],"varieties":[148],"may":[149],"indicate":[150],"usage":[152],"as":[153],"resource":[156],"breeding":[159],"both":[161],"wheat.":[166]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2021-12-31T00:00:00"}