{"id":"https://openalex.org/W383048801","doi":"https://doi.org/10.1002/9781118297674.ch104","title":"Metagenomic Analysis of the Rhizosphere Soil Microbial Community","display_name":"Metagenomic Analysis of the Rhizosphere Soil Microbial Community","publication_year":2013,"publication_date":"2013-03-18","ids":{"openalex":"https://openalex.org/W383048801","doi":"https://doi.org/10.1002/9781118297674.ch104","mag":"383048801"},"language":"en","primary_location":{"id":"doi:10.1002/9781118297674.ch104","doi":"https://doi.org/10.1002/9781118297674.ch104","is_oa":false,"landing_page_url":"https://doi.org/10.1002/9781118297674.ch104","pdf_url":null,"source":{"id":"https://openalex.org/S4306464293","display_name":"Wiley eBooks","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"ebook platform"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular Microbial Ecology of the Rhizosphere","raw_type":"other"},"volume":{"id":"https://openalex.org/W2503263029","display_name":"Molecular Microbial Ecology of the Rhizosphere"},"type":"book-chapter","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037798528","display_name":"Yusuke Unno","orcid":"https://orcid.org/0000-0002-9234-0998","observed_orcids":["https://orcid.org/0000-0002-9234-0998"]},"institutions":[{"id":"https://openalex.org/I4210124625","display_name":"Hokkaido Agricultural Research Center","ror":"https://ror.org/02bkd7d61","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I4210124625"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yusuke Unno","raw_affiliation_strings":["National Agricultural Research Organization, Hokkaido Agricultural Research Center, 1-Hitsujigaoka, Toyohira-ku, Sapporo 0628555, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Agricultural Research Organization, Hokkaido Agricultural Research Center, 1-Hitsujigaoka, Toyohira-ku, Sapporo 0628555, Japan","institution_ids":["https://openalex.org/I4210124625"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083464056","display_name":"Takuro Shinano","orcid":"https://orcid.org/0000-0002-1147-651X","observed_orcids":["https://orcid.org/0000-0002-1147-651X"]},"institutions":[{"id":"https://openalex.org/I4210124625","display_name":"Hokkaido Agricultural Research Center","ror":"https://ror.org/02bkd7d61","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I4210124625"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takuro Shinano","raw_affiliation_strings":["Hokkaido Agricultural Research Center, National Agricultural Research Organization, 1-Hitsujigaoka, Toyohira-ku, Sapporo 0628555, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hokkaido Agricultural Research Center, National Agricultural Research Organization, 1-Hitsujigaoka, Toyohira-ku, Sapporo 0628555, Japan","institution_ids":["https://openalex.org/I4210124625"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210124625"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":93},"biblio":{"volume":null,"issue":null,"first_page":"1099","last_page":"1103"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.5565999746322632,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.5565999746322632,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.2590000033378601,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.12409999966621399,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rhizosphere-soil-microbial-community","display_name":"rhizosphere soil microbial community","score":0.8169999718666077},{"id":"https://openalex.org/keywords/white-lupin","display_name":"Lupinus albus","score":0.9810000061988831},{"id":"https://openalex.org/keywords/proteoid-roots","display_name":"proteoid roots","score":0.996999979019165},{"id":"https://openalex.org/keywords/metagenomics","display_name":"metagenomics","score":0.6620000004768372},{"id":"https://openalex.org/keywords/water-fractionation","display_name":"water fractionation","score":0.8529999852180481},{"id":"https://openalex.org/keywords/phylogenetic-diversity","display_name":"phylogenetic diversity","score":0.8370000123977661},{"id":"https://openalex.org/keywords/functional-diversity","display_name":"functional diversity","score":0.9229999780654907},{"id":"https://openalex.org/keywords/functional-annotation","display_name":"functional annotation","score":0.6700000166893005}],"concepts":[{"id":"https://openalex.org/C86626682","wikidata":"https://www.wikidata.org/wiki/Q1124578","display_name":"Rhizosphere","level":3,"score":0.9591796398162842},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.922585129737854},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7087692022323608},{"id":"https://openalex.org/C33411773","wikidata":"https://www.wikidata.org/wiki/Q4996488","display_name":"Bulk soil","level":4,"score":0.5535816550254822},{"id":"https://openalex.org/C175605896","wikidata":"https://www.wikidata.org/wiki/Q39833","display_name":"Microorganism","level":3,"score":0.5226540565490723},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.4947070777416229},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.44969823956489563},{"id":"https://openalex.org/C172365310","wikidata":"https://www.wikidata.org/wiki/Q7554937","display_name":"Soil microbiology","level":3,"score":0.443220317363739},{"id":"https://openalex.org/C81407943","wikidata":"https://www.wikidata.org/wiki/Q17149178","display_name":"Microbial population biology","level":3,"score":0.4410002827644348},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3607274293899536},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.32294559478759766},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3090713620185852},{"id":"https://openalex.org/C159750122","wikidata":"https://www.wikidata.org/wiki/Q96621023","display_name":"Soil water","level":2,"score":0.2754001021385193},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.23160132765769958},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.2034928798675537},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17184817790985107}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1002/9781118297674.ch104","doi":"https://doi.org/10.1002/9781118297674.ch104","is_oa":false,"landing_page_url":"https://doi.org/10.1002/9781118297674.ch104","pdf_url":null,"source":{"id":"https://openalex.org/S4306464293","display_name":"Wiley eBooks","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"ebook platform"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular Microbial Ecology of the Rhizosphere","raw_type":"other"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.4390000104904175,"display_name":"Life on land"},{"id":"https://metadata.un.org/sdg/2","score":0.4359000027179718,"display_name":"Zero hunger"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1660746039","https://openalex.org/W1934798267","https://openalex.org/W1970885568","https://openalex.org/W1978959908","https://openalex.org/W1983370301","https://openalex.org/W1984566951","https://openalex.org/W1990593690","https://openalex.org/W1994181972","https://openalex.org/W2007653090","https://openalex.org/W2023359860","https://openalex.org/W2034872099","https://openalex.org/W2078071702","https://openalex.org/W2081647782","https://openalex.org/W2100040842","https://openalex.org/W2118355172","https://openalex.org/W2131948668","https://openalex.org/W2131988453","https://openalex.org/W2134483262","https://openalex.org/W2140587548","https://openalex.org/W2145132040","https://openalex.org/W2161030589","https://openalex.org/W2164455858","https://openalex.org/W4237947988"],"related_works":["https://openalex.org/W3162329349","https://openalex.org/W4416437326","https://openalex.org/W2752485466","https://openalex.org/W1596353272","https://openalex.org/W2606773848","https://openalex.org/W4285390962","https://openalex.org/W3162079516","https://openalex.org/W7206625251","https://openalex.org/W3201900227","https://openalex.org/W3197495633"],"abstract_inverted_index":{"A":[0],"metagenomic":[1],"approach":[2],"to":[3,39,50,99],"detect":[4],"and":[5,74,109],"analyze":[6],"rhizosphere":[7,68],"microbial":[8],"communities":[9],"was":[10,37],"carried":[11],"out":[12],"on":[13],"Lupinus":[14],"albus":[15],"(L.)":[16],"roots,":[17],"which":[18,87],"possessed":[19],"proteoid":[20,66],"roots.":[21],"To":[22],"reduce":[23],"the":[24,27,56,61,72,101],"contamination":[25],"of":[26,65,81,84,111],"soil":[28,69,85,102],"metagenome":[29],"sequence":[30],"with":[31],"plant":[32,57],"gene":[33],"sequences,":[34],"water":[35],"fractionation":[36],"found":[38],"be":[40],"better":[41],"than":[42],"air":[43],"fractionation.":[44],"Bioinformatics":[45],"approaches":[46],"were":[47],"also":[48,75,94],"used":[49],"remove":[51],"these":[52],"genes":[53],"derived":[54],"from":[55],"genome.":[58],"Comparison":[59],"among":[60,78],"different":[62],"developmental":[63],"stages":[64],"root":[67],"metagenomes":[70],"revealed":[71],"phylogenetical":[73,91],"functional":[76,95],"diversity":[77],"them.":[79],"Integration":[80],"genome":[82],"databases":[83],"microorganism,":[86],"supports":[88],"not":[89],"only":[90],"data":[92],"but":[93],"annotation,":[96],"is":[97],"needed":[98],"understand":[100],"metabolic":[103],"process.":[104],"Our":[105],"results":[106],"show":[107],"potential":[108],"validity":[110],"this":[112],"approach.":[113]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-06-24T00:00:00"}
