{"id":"https://openalex.org/W34819705","doi":null,"title":"A Spectroscopic Study of Bacterial Polymers Mediating Cell Adhesion and Mineral Transformations","display_name":"A Spectroscopic Study of Bacterial Polymers Mediating Cell Adhesion and Mineral Transformations","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W34819705","mag":"34819705"},"language":"en","primary_location":{"id":"pmh:oai:repository.arizona.edu:10150/194274","doi":null,"is_oa":false,"landing_page_url":"http://hdl.handle.net/10150/194274","pdf_url":null,"source":{"id":"https://openalex.org/S4306400271","display_name":"UA Campus Repository (The University of Arizona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I138006243","host_organization_name":"University of Arizona","host_organization_lineage":["https://openalex.org/I138006243"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Electronic Dissertation"},"volume":null,"type":"dissertation","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091152357","display_name":"Sanjai J. Parikh","orcid":"https://orcid.org/0000-0002-5260-0417","observed_orcids":["https://orcid.org/0000-0002-5260-0417"]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Sanjai J. Parikh","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-5260-0417","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5091152357"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.41940000653266907,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.41940000653266907,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11231","display_name":"Microbial Fuel Cells and Bioremediation","score":0.2257000058889389,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10859","display_name":"Polymer Surface Interaction Studies","score":0.09030000120401382,"subfield":{"id":"https://openalex.org/subfields/2508","display_name":"Surfaces, Coatings and Films"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bacterial-adhesion","display_name":"bacterial adhesion","score":0.9459999799728394},{"id":"https://openalex.org/keywords/extracellular-polymeric-substances","display_name":"extracellular polymeric substances","score":0.9620000123977661},{"id":"https://openalex.org/keywords/lipopolysaccharide","display_name":"lipopolysaccharide","score":0.9079999923706055},{"id":"https://openalex.org/keywords/manganese-oxidation","display_name":"manganese oxidation","score":0.48899999260902405},{"id":"https://openalex.org/keywords/pseudomonas-putida","display_name":"Pseudomonas putida","score":0.8650000095367432},{"id":"https://openalex.org/keywords/pseudomonas-aeruginosa","display_name":"Pseudomonas aeruginosa","score":0.8320000171661377},{"id":"https://openalex.org/keywords/shewanella-oneidensis","display_name":"Shewanella oneidensis","score":0.9319999814033508},{"id":"https://openalex.org/keywords/bacillus-subtilis","display_name":"Bacillus subtilis","score":0.9810000061988831},{"id":"https://openalex.org/keywords/inner-sphere-complexes","display_name":"inner-sphere complexes","score":0.7089999914169312},{"id":"https://openalex.org/keywords/znse","display_name":"ZnSe","score":0.8259999752044678},{"id":"https://openalex.org/keywords/solid-solution-interface","display_name":"solid-solution interface","score":0.597000002861023},{"id":"https://openalex.org/keywords/calcium-binding","display_name":"calcium binding","score":0.6729999780654907}],"concepts":[{"id":"https://openalex.org/C160892712","wikidata":"https://www.wikidata.org/wiki/Q901559","display_name":"Fourier transform infrared spectroscopy","level":2,"score":0.6998341083526611},{"id":"https://openalex.org/C2777637488","wikidata":"https://www.wikidata.org/wiki/Q31856","display_name":"Pseudomonas aeruginosa","level":3,"score":0.49860596656799316},{"id":"https://openalex.org/C84416704","wikidata":"https://www.wikidata.org/wiki/Q188666","display_name":"Adhesion","level":2,"score":0.48804107308387756},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.44994819164276123},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.30975788831710815},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2328752875328064},{"id":"https://openalex.org/C42360764","wikidata":"https://www.wikidata.org/wiki/Q83588","display_name":"Chemical engineering","level":1,"score":0.23138535022735596},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12186813354492188},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.11421814560890198},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08750641345977783}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:repository.arizona.edu:10150/194274","doi":null,"is_oa":false,"landing_page_url":"http://hdl.handle.net/10150/194274","pdf_url":null,"source":{"id":"https://openalex.org/S4306400271","display_name":"UA Campus Repository (The University of Arizona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I138006243","host_organization_name":"University of Arizona","host_organization_lineage":["https://openalex.org/I138006243"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Electronic Dissertation"},{"id":"mag:34819705","doi":null,"is_oa":false,"landing_page_url":"http://arizona.openrepository.com/arizona/handle/10150/194274","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":162,"referenced_works":["https://openalex.org/W15668222","https://openalex.org/W103977380","https://openalex.org/W125395780","https://openalex.org/W171048902","https://openalex.org/W201532712","https://openalex.org/W216623422","https://openalex.org/W419229152","https://openalex.org/W591832344","https://openalex.org/W871430943","https://openalex.org/W1482628332","https://openalex.org/W1506850331","https://openalex.org/W1512557606","https://openalex.org/W1517927215","https://openalex.org/W1521958691","https://openalex.org/W1537049479","https://openalex.org/W1546531301","https://openalex.org/W1546999957","https://openalex.org/W1571218022","https://openalex.org/W1581365757","https://openalex.org/W1584186319","https://openalex.org/W1607187478","https://openalex.org/W1660712537","https://openalex.org/W1814930618","https://openalex.org/W1938381745","https://openalex.org/W1964233549","https://openalex.org/W1965381666","https://openalex.org/W1966544491","https://openalex.org/W1967716128","https://openalex.org/W1970012214","https://openalex.org/W1971447872","https://openalex.org/W1975443325","https://openalex.org/W1976748835","https://openalex.org/W1977795744","https://openalex.org/W1980995004","https://openalex.org/W1982660730","https://openalex.org/W1983252610","https://openalex.org/W1984128566","https://openalex.org/W1984637730","https://openalex.org/W1984902956","https://openalex.org/W1984976525","https://openalex.org/W1985317114","https://openalex.org/W1985416731","https://openalex.org/W1985494525","https://openalex.org/W1987459669","https://openalex.org/W1987509663","https://openalex.org/W1988088510","https://openalex.org/W1992126485","https://openalex.org/W1993412930","https://openalex.org/W1996612476","https://openalex.org/W1996653238","https://openalex.org/W1997690168","https://openalex.org/W1997891199","https://openalex.org/W1999001127","https://openalex.org/W2001569843","https://openalex.org/W2002491608","https://openalex.org/W2002683826","https://openalex.org/W2005359765","https://openalex.org/W2006105495","https://openalex.org/W2006170464","https://openalex.org/W2006260305","https://openalex.org/W2007002347","https://openalex.org/W2007429660","https://openalex.org/W2010113762","https://openalex.org/W2013188531","https://openalex.org/W2014108714","https://openalex.org/W2018854273","https://openalex.org/W2020140234","https://openalex.org/W2020848800","https://openalex.org/W2025453203","https://openalex.org/W2027438947","https://openalex.org/W2027944117","https://openalex.org/W2031997066","https://openalex.org/W2035538063","https://openalex.org/W2037512339","https://openalex.org/W2039128307","https://openalex.org/W2040684628","https://openalex.org/W2042750208","https://openalex.org/W2043469802","https://openalex.org/W2044304857","https://openalex.org/W2044491656","https://openalex.org/W2048625796","https://openalex.org/W2049507739","https://openalex.org/W2053531963","https://openalex.org/W2053987133","https://openalex.org/W2056472979","https://openalex.org/W2060032071","https://openalex.org/W2061786504","https://openalex.org/W2062102053","https://openalex.org/W2062593377","https://openalex.org/W2064669335","https://openalex.org/W2065688197","https://openalex.org/W2066228335","https://openalex.org/W2067561347","https://openalex.org/W2068301245","https://openalex.org/W2068756212","https://openalex.org/W2069388534","https://openalex.org/W2070168624","https://openalex.org/W2071413887","https://openalex.org/W2072167321","https://openalex.org/W2072903858","https://openalex.org/W2076166680","https://openalex.org/W2076944398","https://openalex.org/W2077542316","https://openalex.org/W2078273439","https://openalex.org/W2079928468","https://openalex.org/W2081499104","https://openalex.org/W2082477857","https://openalex.org/W2082692719","https://openalex.org/W2084858354","https://openalex.org/W2086446665","https://openalex.org/W2088024754","https://openalex.org/W2088492742","https://openalex.org/W2090493088","https://openalex.org/W2091689948","https://openalex.org/W2094409106","https://openalex.org/W2095974422","https://openalex.org/W2102231003","https://openalex.org/W2105721198","https://openalex.org/W2106268433","https://openalex.org/W2108757303","https://openalex.org/W2109386846","https://openalex.org/W2110313414","https://openalex.org/W2112531993","https://openalex.org/W2113141368","https://openalex.org/W2114251560","https://openalex.org/W2114505691","https://openalex.org/W2117898563","https://openalex.org/W2119421613","https://openalex.org/W2122115838","https://openalex.org/W2122329033","https://openalex.org/W2124621400","https://openalex.org/W2125955445","https://openalex.org/W2126129862","https://openalex.org/W2126342843","https://openalex.org/W2127994827","https://openalex.org/W2128008733","https://openalex.org/W2132521599","https://openalex.org/W2132914844","https://openalex.org/W2133200808","https://openalex.org/W2134352129","https://openalex.org/W2135298847","https://openalex.org/W2138257177","https://openalex.org/W2143526138","https://openalex.org/W2144082864","https://openalex.org/W2146948320","https://openalex.org/W2155836299","https://openalex.org/W2156194935","https://openalex.org/W2156382695","https://openalex.org/W2159170189","https://openalex.org/W2159869855","https://openalex.org/W2160060966","https://openalex.org/W2168268555","https://openalex.org/W2169926457","https://openalex.org/W2169946424","https://openalex.org/W2171101997","https://openalex.org/W2172116395","https://openalex.org/W2173171001","https://openalex.org/W2321168824","https://openalex.org/W2412052856","https://openalex.org/W2466957121","https://openalex.org/W3042936721","https://openalex.org/W3140098542"],"related_works":["https://openalex.org/W2066079114","https://openalex.org/W2120298125","https://openalex.org/W2527546754","https://openalex.org/W2066228335","https://openalex.org/W2333742385","https://openalex.org/W2143526138","https://openalex.org/W2019737105","https://openalex.org/W2045622390","https://openalex.org/W2314457972","https://openalex.org/W1969670349"],"abstract_inverted_index":{"Current":[0],"understanding":[1],"of":[2,12,28,71,79,148,157,169,186,214,239,255,281,302,306,314],"molecular-level":[3],"interactions":[4,25,78,205],"is":[5,17,36,74,126,140],"inadequate":[6],"to":[7,19,66,75,112,116,124,201,257,266,297,337],"explain":[8],"the":[9,155,226,261,291,299],"initial":[10],"moments":[11],"bacterial":[13,39],"adhesion.":[14],"Such":[15],"information":[16],"required":[18],"develop":[20],"appropriate":[21],"models":[22],"for":[23,142,192,207],"bacteria-surface":[24],"and":[26,44,53,59,165,177,210,232,241,269,287,310,318,324,347],"predictions":[27],"cell":[29,57,80,122,138,209],"transport":[30],"in":[31,94,101,131,220,225,260,312],"subsurface":[32],"environments.":[33],"Bacterial":[34],"adhesion":[35,58,123,139],"influenced":[37],"by":[38],"surfaces,":[40],"substratum":[41],"physical-chemical":[42],"characteristics,":[43],"solution":[45,329],"chemistry.":[46],"Extracellular":[47],"polymeric":[48],"substances":[49],"(EPS),":[50],"surface":[51,81,149,162],"proteins,":[52],"lipopolysaccharides":[54],"(LPS)":[55],"mediate":[56],"conditioning":[60],"film":[61],"formation":[62,156],"via":[63,118,146,342],"direct":[64],"bonding":[65,204],"a":[67],"substrate.":[68],"The":[69,97,151,212],"goal":[70],"this":[72,95],"dissertation":[73],"probe":[76,298],"molecular-scale":[77],"macromolecules":[82],"at":[83],"mineral":[84],"surfaces":[85,305,341],"under":[86],"environmentally-relevant":[87],"conditions.":[88],"Four":[89],"primary":[90],"investigations":[91],"are":[92,326,334],"presented":[93],"dissertation.":[96],"first":[98],"study":[99],"uses":[100],"situ":[102],"attenuated":[103],"total":[104],"reflectance":[105],"(ATR)":[106],"Fourier":[107],"transform":[108],"infrared":[109],"(FTIR)":[110],"spectroscopy":[111],"reveal":[113,248],"that":[114],"prior":[115],"Mn-oxidation":[117,129],"Pseudomonas":[119],"putida":[120],"GB-1,":[121],"ZnSe":[125,273],"favorable.":[127],"Subsequent":[128],"results":[130],"increased":[132,270],"extracellular":[133],"proteins":[134],"expression.":[135],"Conversely,":[136],"planktonic":[137],"inhibited":[141],"Mn-oxide":[143],"coated":[144],"cells":[145],"blocking":[147],"proteins.":[150],"second":[152],"investigation":[153],"reveals":[154],"inner-sphere":[158,188],"complexes":[159],"between":[160],"bacteria":[161,170],"phosphoryl":[163],"groups":[164,259],"nanohematite":[166],"(\u03b1-Fe\u2082O\u2083).":[167],"Spectra":[168,190],"(P.":[171],"aeruginosa":[172,216],"PAO1,":[173],"Shewanella":[174],"oneidensis":[175],"MR-1,":[176],"Bacillus":[178],"subtilis)":[179],"on":[180,304],"\u03b1-":[181],"Fe\u2082O\u2083":[182],"contain":[183],"peaks":[184],"indicative":[185],"P-OFe":[187,203],"bonding.":[189],"collected":[191],"oxide-adsorbed":[193],"model":[194],"P-containing":[195],"compounds":[196],"give":[197],"spectral":[198],"signatures":[199],"similar":[200],"those":[202],"observed":[206],"whole":[208],"EPS.":[211],"behavior":[213],"P.":[215],"serotype":[217],"10":[218],"LPS":[219,282,303],"aqueous":[221],"solutions":[222,313],"was":[223,295],"investigated":[224],"third":[227],"study.":[228],"Ionic":[229],"strength,":[230],"pH,":[231],"electrolyte":[233],"composition":[234,317],"were":[235],"varied":[236],"during":[237],"collection":[238],"ATR-FTIR":[240,294],"dynamic":[242],"light":[243],"scattering":[244],"(DLS)":[245],"data.":[246],"Results":[247],"stable":[249,323],"aggregate":[250,267],"Na-LPS":[251,320],"aggregates,":[252],"whereas":[253],"binding":[254],"Ca\u00b2\u207a":[256],"phosphate":[258],"lipid":[262],"A":[263],"region":[264],"leads":[265],"reorientation":[268],"interaction":[271,339],"with":[272,284,340],"(hydrophobic).":[274],"DLS":[275],"data":[276],"demonstrate":[277],"decreasing":[278,288],"hydrodynamic":[279],"radius":[280],"aggregates":[283,321,333],"increasing":[285],"I":[286],"pH.":[289,319],"In":[290],"fourth":[292],"investigation,":[293],"used":[296],"solid-solution":[300],"interface":[301],"ZnSe,":[307],"Ge,":[308],"\u03b1-Fe\u2082O\u2083,":[309],"\u03b1-Al\u2082O\u2083":[311],"varying":[315],"ionic":[316],"remain":[322],"spectra":[325],"biased":[327],"towards":[328],"phase":[330],"LPS.":[331],"Ca-LPS":[332],"disrupted,":[335],"leading":[336],"enhanced":[338],"hydrophobic":[343],"(lipid":[344],"A-":[345],"ZnSe)":[346],"electrostatic":[348],"(O-antigenhydrophilic":[349],"surfaces)":[350],"interactions.":[351]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-08-08T07:41:36.138363","created_date":"2016-06-24T00:00:00"}