{"id":"https://openalex.org/W343339128","doi":null,"title":"DNA microarray expression analysis of Xanthomonas oryzae pv. oryzae in rice leaves at early infection stages using selective bacterial transcript labeling with genome-directed primers.","display_name":"DNA microarray expression analysis of Xanthomonas oryzae pv. oryzae in rice leaves at early infection stages using selective bacterial transcript labeling with genome-directed primers.","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W343339128","mag":"343339128"},"language":"en","primary_location":{"id":"mag:343339128","doi":null,"is_oa":false,"landing_page_url":"https://www.cabdirect.org/cabdirect/abstract/20093330357","pdf_url":null,"source":{"id":"https://openalex.org/S4306529288","display_name":"Zhongguo nongye Kexue","issn_l":"0578-1752","issn":["0578-1752"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","poland-20","russia-white-list-2"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"Zhongguo nongye Kexue","raw_type":null},"volume":null,"type":"article","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100608023","display_name":"Xinjian Zhang","orcid":"https://orcid.org/0000-0002-5839-6197","observed_orcids":["https://orcid.org/0000-0002-5839-6197"]},"institutions":[{"id":"https://openalex.org/I4210097978","display_name":"Institute of Plant Protection","ror":"https://ror.org/0111f7045","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210097978","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4391767650","display_name":"State Key Laboratory of Biology of Plant Diseases and Insect Pests","ror":"https://ror.org/04bcwdq54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210097978","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4391767650"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinjian Zhang","raw_affiliation_strings":["State Key Laboratory for Biology of Plant Diseases and Insect Pests,Institute of Plant Protection,Chinese Academy of Agricultural Sciences,Beijing 100193)"],"raw_orcid":"https://orcid.org/0000-0002-5839-6197","affiliations":[{"raw_affiliation_string":"State Key Laboratory for Biology of Plant Diseases and Insect Pests,Institute of Plant Protection,Chinese Academy of Agricultural Sciences,Beijing 100193)","institution_ids":["https://openalex.org/I4210097978","https://openalex.org/I4210138501","https://openalex.org/I4391767650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011133368","display_name":"Gao ShiQiang","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gao ShiQiang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087796663","display_name":"Maosen Wu","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Maosen Wu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5100614308","display_name":"Chenyang He","orcid":"https://orcid.org/0000-0002-2354-9675","observed_orcids":["https://orcid.org/0000-0002-2354-9675"]},"institutions":[{"id":"https://openalex.org/I4210097978","display_name":"Institute of Plant Protection","ror":"https://ror.org/0111f7045","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210097978","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4391767650","display_name":"State Key Laboratory of Biology of Plant Diseases and Insect Pests","ror":"https://ror.org/04bcwdq54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210097978","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4391767650"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenyang He","raw_affiliation_strings":["State Key Laboratory for Biology of Plant Diseases and Insect Pests,Institute of Plant Protection,Chinese Academy of Agricultural Sciences,Beijing 100193)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory for Biology of Plant Diseases and Insect Pests,Institute of Plant Protection,Chinese Academy of Agricultural Sciences,Beijing 100193)","institution_ids":["https://openalex.org/I4210097978","https://openalex.org/I4210138501","https://openalex.org/I4391767650"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":93},"biblio":{"volume":"42","issue":"10","first_page":"3501","last_page":"3508"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.0007999999797903001,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/xanthomonas-oryzae-pv-oryzae","display_name":"Xanthomonas oryzae pv. oryzae","score":1.0},{"id":"https://openalex.org/keywords/bacterial-leaf-blight","display_name":"bacterial leaf blight","score":0.8489999771118164},{"id":"https://openalex.org/keywords/virulence-genes","display_name":"virulence genes","score":0.9100000262260437},{"id":"https://openalex.org/keywords/differential-gene-expression","display_name":"differential gene expression","score":0.7749999761581421},{"id":"https://openalex.org/keywords/early-infection-stage","display_name":"early infection stage","score":0.7850000262260437},{"id":"https://openalex.org/keywords/rice-leaves","display_name":"rice leaves","score":0.703000009059906},{"id":"https://openalex.org/keywords/in-planta-gene-expression","display_name":"in planta gene expression","score":0.7319999933242798}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8356152176856995},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.7747799754142761},{"id":"https://openalex.org/C2776964914","wikidata":"https://www.wikidata.org/wiki/Q8043056","display_name":"Xanthomonas oryzae","level":3,"score":0.7709428668022156},{"id":"https://openalex.org/C2780785505","wikidata":"https://www.wikidata.org/wiki/Q16993531","display_name":"Xanthomonas oryzae pv. oryzae","level":4,"score":0.6831662654876709},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.670932412147522},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.6605785489082336},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.5957249999046326},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5747420787811279},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.515733540058136},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5120232701301575},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.4441385865211487}],"mesh":[],"locations_count":1,"locations":[{"id":"mag:343339128","doi":null,"is_oa":false,"landing_page_url":"https://www.cabdirect.org/cabdirect/abstract/20093330357","pdf_url":null,"source":{"id":"https://openalex.org/S4306529288","display_name":"Zhongguo nongye Kexue","issn_l":"0578-1752","issn":["0578-1752"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","poland-20","russia-white-list-2"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"Zhongguo nongye Kexue","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.8409000039100647}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1968142817","https://openalex.org/W7096125135","https://openalex.org/W2103697806","https://openalex.org/W280460309","https://openalex.org/W2374752405","https://openalex.org/W2372647997","https://openalex.org/W2284444474","https://openalex.org/W3170970993","https://openalex.org/W2900947575","https://openalex.org/W4396222165"],"abstract_inverted_index":{"\u3010Objective\u3011":[0],"The":[1,113,177,193,215],"objective":[2],"of":[3,14,38,42,55,60,83,85,110,117,120,133,179,190,195,207,218],"this":[4],"study":[5],"is":[6,209],"to":[7,44,47,154,185],"reveal":[8],"the":[9,39,51,75,92,139,155,212,222,226],"bacterial":[10,151,186],"gene":[11,204],"expression":[12,29,115,178,205],"profiling":[13,116,206],"Xanthomonas":[15],"oryzae":[16,18],"pv.":[17],"(Xoo)":[19],"in":[20,50,68,74,138,170,202],"rice":[21,104,140],"leaves":[22,105],"at":[23,122,143,172],"early":[24,124,174],"infection":[25,125,175],"stages":[26,126],"via":[27],"DNA":[28],"microarray":[30,84],"analysis.":[31,229],"\u3010Method\u3011":[32],"A":[33,81],"computer-based":[34],"algorithm":[35],"for":[36,201,211,225],"prediction":[37],"minimal":[40],"number":[41],"primers":[43],"specifically":[45],"anneal":[46],"all":[48,72,173],"genes":[49,73,88,119,132,163,167,181,217],"genome":[52,57,76],"(genome-directed":[53],"primers,GDPs)":[54],"KACC10331,a":[56],"sequenced":[58],"strain":[59],"Xoo":[61,121,134,171,180,208,219],"was":[62,89,127],"used.":[63,80],"Seventy-four":[64],"oligonucleotides":[65],"(8":[66],"mer":[67],"length":[69],"each)":[70],"priming":[71],"were":[77,98,135,168],"predicted":[78],"and":[79,94,107,130,147,164,188],"set":[82],"371":[86],"pathogenicity-related":[87,118],"hybridized":[90],"with":[91,199],"GDPs-primed":[93],"fluorescent":[95],"Cy3/Cy5-labeled":[96],"cDNAs,which":[97],"reverse-transcribed":[99],"from":[100,103],"RNAs":[101],"isolated":[102],"1d,3d":[106],"7d":[108],"post-inoculation":[109],"Xoo.":[111],"\u3010Result\u3011":[112],"differential":[114],"different":[123],"found.":[128],"Forty-two,fifty-one":[129],"thirty-three":[131],"differentially":[136],"expressed":[137],"leaf":[141],"tissues":[142],"1":[144],"d,3":[145],"d":[146,149],"7":[148],"after":[150],"inoculation":[152],"relative":[153],"nutrition":[156],"rich":[157],"media":[158],"NBY,respectively.":[159],"Among":[160],"them,5":[161],"up-regulated":[162],"5":[165],"down-regulated":[166],"observed":[169],"stages.":[176],"might":[182,220],"be":[183,221],"related":[184],"invasion,adaptation,proliferation":[187],"appearance":[189],"symptom.":[191],"\u3010Conclusion\u3011":[192],"approach":[194],"selective":[196],"transcript":[197],"labeling":[198],"GDPs":[200],"planta":[203],"reported":[210],"first":[213],"time.":[214],"differentially-expressed":[216],"candidate":[223],"targets":[224],"further":[227],"functional":[228]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-10-27T15:51:10.671819","created_date":"2016-06-24T00:00:00"}
