{"id":"https://openalex.org/W336510481","doi":"https://doi.org/10.7936/k75d8psj","title":"Phylogeography of Oryza rufipogon: History, Demography and Climate Change","display_name":"Phylogeography of Oryza rufipogon: History, Demography and Climate Change","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W336510481","doi":"https://doi.org/10.7936/k75d8psj","mag":"336510481"},"language":"en","primary_location":{"id":"pmh:oai:openscholarship.wustl.edu:art_sci_etds-1053","doi":null,"is_oa":false,"landing_page_url":"https://openscholarship.wustl.edu/art_sci_etds/51","pdf_url":null,"source":{"id":"https://openalex.org/S4377196400","display_name":"Open Scholarship Institutional Repository (Washington University in St. Louis)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I204465549","host_organization_name":"Washington University in St. Louis","host_organization_lineage":["https://openalex.org/I204465549"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Arts & Sciences Electronic Theses and Dissertations","raw_type":"text"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.7936/k75d8psj","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001985779","display_name":"Pu Huang","orcid":"https://orcid.org/0000-0003-1133-2716","observed_orcids":["https://orcid.org/0000-0003-1133-2716"]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Huang, Pu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5001985779"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9345999956130981,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9345999956130981,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.06300000101327896,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.0013000000035390258,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/oryza-rufipogon","display_name":"Oryza rufipogon","score":0.9940000176429749},{"id":"https://openalex.org/keywords/phylogeography","display_name":"phylogeography","score":0.9259999990463257},{"id":"https://openalex.org/keywords/domestication-bottleneck","display_name":"domestication bottleneck","score":0.6480000019073486},{"id":"https://openalex.org/keywords/introgression","display_name":"introgression","score":0.8399999737739563},{"id":"https://openalex.org/keywords/population-fluctuations","display_name":"population fluctuations","score":0.4830000102519989},{"id":"https://openalex.org/keywords/historical-demography","display_name":"historical demography","score":0.6179999709129333},{"id":"https://openalex.org/keywords/climate-change","display_name":"climate change","score":0.5649999976158142},{"id":"https://openalex.org/keywords/last-glacial-period","display_name":"last glacial period","score":0.8040000200271606},{"id":"https://openalex.org/keywords/vicariance","display_name":"vicariance","score":0.7139999866485596},{"id":"https://openalex.org/keywords/species-distribution-modeling","display_name":"species distribution modeling","score":0.7580000162124634},{"id":"https://openalex.org/keywords/genetic-differentiation","display_name":"genetic differentiation","score":0.5490000247955322},{"id":"https://openalex.org/keywords/indochina","display_name":"Indochina","score":0.6639999747276306},{"id":"https://openalex.org/keywords/genetic-cline","display_name":"genetic cline","score":0.33000001311302185}],"concepts":[{"id":"https://openalex.org/C94043034","wikidata":"https://www.wikidata.org/wiki/Q377756","display_name":"Phylogeography","level":4,"score":0.6684794425964355},{"id":"https://openalex.org/C2781450044","wikidata":"https://www.wikidata.org/wiki/Q2217322","display_name":"Oryza rufipogon","level":4,"score":0.5996456146240234},{"id":"https://openalex.org/C517289559","wikidata":"https://www.wikidata.org/wiki/Q10297573","display_name":"Demographic history","level":4,"score":0.522685170173645},{"id":"https://openalex.org/C132651083","wikidata":"https://www.wikidata.org/wiki/Q7942","display_name":"Climate change","level":2,"score":0.4895807206630707},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.425011545419693},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.4104781746864319},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.368891179561615},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3577226400375366},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.35078489780426025},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.34952491521835327},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.17771759629249573},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16985604166984558},{"id":"https://openalex.org/C2778543611","wikidata":"https://www.wikidata.org/wiki/Q161426","display_name":"Oryza sativa","level":3,"score":0.15812000632286072},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.15396499633789062},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.08511266112327576},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"pmh:oai:openscholarship.wustl.edu:art_sci_etds-1053","doi":null,"is_oa":false,"landing_page_url":"https://openscholarship.wustl.edu/art_sci_etds/51","pdf_url":null,"source":{"id":"https://openalex.org/S4377196400","display_name":"Open Scholarship Institutional Repository (Washington University in St. Louis)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I204465549","host_organization_name":"Washington University in St. Louis","host_organization_lineage":["https://openalex.org/I204465549"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Arts & Sciences Electronic Theses and Dissertations","raw_type":"text"},{"id":"pmh:oai:repository.library.washu.edu:art_sci_etds-1053","doi":null,"is_oa":false,"landing_page_url":"https://repository.library.washu.edu/art_sci_etds/51","pdf_url":null,"source":{"id":"https://openalex.org/S4377196400","display_name":"Open Scholarship Institutional Repository (Washington University in St. Louis)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I204465549","host_organization_name":"Washington University in St. Louis","host_organization_lineage":["https://openalex.org/I204465549"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Arts & Sciences Graduate Student Theses and Dissertations","raw_type":"text"},{"id":"mag:336510481","doi":null,"is_oa":false,"landing_page_url":"https://openscholarship.wustl.edu/art_sci_etds/51/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"doi:10.7936/k75d8psj","doi":"https://doi.org/10.7936/k75d8psj","is_oa":true,"landing_page_url":"https://doi.org/10.7936/k75d8psj","pdf_url":null,"source":{"id":"https://openalex.org/S7407053377","display_name":"Washington University in St. Louis Libraries","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.7936/k75d8psj","doi":"https://doi.org/10.7936/k75d8psj","is_oa":true,"landing_page_url":"https://doi.org/10.7936/k75d8psj","pdf_url":null,"source":{"id":"https://openalex.org/S7407053377","display_name":"Washington University in St. Louis Libraries","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.40450000762939453,"id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W6892146693","https://openalex.org/W2096344380","https://openalex.org/W2041546943","https://openalex.org/W1927915198","https://openalex.org/W6892300362","https://openalex.org/W2166304276","https://openalex.org/W2037347042","https://openalex.org/W2531387228","https://openalex.org/W2763401553","https://openalex.org/W2789786628"],"abstract_inverted_index":{"Asian":[0,35],"wild":[1,219],"rice":[2,36,216,398],"(Oryza":[3],"rufipogon)":[4],"is":[5,26,71,152,163,174,199,223,332,342,385,399],"a":[6,105,113,177,269,277,298,403],"plant":[7],"species":[8,270,305,378],"widely":[9],"distributed":[10],"across":[11,86],"the":[12,22,30,54,74,81,94,119,135,148,159,169,242,247,260,292,302,312,316,330,337,350,370,377,410,413],"eastern":[13,149,325],"and":[14,45,97,130,144,192,210,233,244,250,267,326,334,336,356],"southern":[15],"parts":[16],"of":[17,21,33,56,62,67,76,83,107,115,123,168,203,246,281,286,339,354,412],"Asia.":[18],"A":[19,307],"member":[20],"Poaceae,":[23],"Oryza":[24],"rufipogon":[25,78,304,322,341,384],"commonly":[27],"recognized":[28],"as":[29,364],"direct":[31],"ancestor":[32],"cultivated":[34,170,215,397],"(O.":[37],"sativa).":[38],"Due":[39],"to":[40,52,72,92,154,166,240,276,349,369,388,401,409],"its":[41,218],"great":[42],"economic,":[43],"cultural":[44],"evolutionary":[46,96],"significance,":[47],"many":[48],"studies":[49],"have":[50],"sought":[51],"resolve":[53],"patterns":[55,82],"genetic":[57,84,127,229],"variation":[58,85],"in":[59,112,184,254,301,315,373],"this":[60,68,287],"pair":[61],"species.":[63,414],"The":[64,284],"main":[65],"focus":[66],"thesis":[69],"work":[70],"elucidate":[73],"phylogeography":[75],"O.":[77,124,155,180,208,211,255,282,303,321,340,374,383],"by":[79],"determining":[80],"geographical":[87],"space.":[88],"Further,":[89],"I":[90],"seek":[91],"determine":[93,241],"historic,":[95],"environmental":[98],"factors":[99,261],"that":[100,117,147,179,197,367,382],"created":[101],"such":[102],"patterns.By":[103],"examining":[104],"set":[106],"genome-wide,":[108],"sequence":[109],"based":[110,188],"markers":[111],"collection":[114],"samples":[116],"covers":[118],"whole":[120],"distribution":[121,271,338,379],"range":[122],"rufipogon,":[125,212],"two":[126,136],"groups":[128,137],"(Ruf-I":[129],"Ruf-II)":[131],"were":[132,237],"detected.":[133],"Geographically,":[134],"form":[138],"an":[139,200],"east-west":[140],"cline.":[141],"Cluster":[142],"analysis":[143,187,288],"PCA":[145],"indicate":[146],"group":[150,161],"(Ruf-I)":[151],"similar":[153,165],"sativa":[156,181,209],"indica,":[157],"while":[158],"western":[160,327],"(Ruf-II)":[162],"not":[164],"either":[167],"varieties.":[171],"This":[172,221,344],"pattern":[173,202,372],"congruent":[175],"with":[176],"hypothesis":[178],"was":[182,274,297],"domesticated":[183],"China.":[185],"Further":[186],"on":[189],"coalescent":[190],"simulation":[191],"diffusion":[193],"approximation":[194],"approaches":[195,236],"suggest":[196,361],"there":[198,296],"asymmetrical":[201],"historical":[204,362],"gene":[205,394],"flow":[206,395],"between":[207,231,265],"mainly":[213],"from":[214,396],"into":[217,323],"relative.":[220],"introgression":[222],"also":[224,238],"one":[225],"possible":[226],"cause":[227],"for":[228,263],"differentiation":[230,264],"Ruf-I":[232,266,355],"Ruf-II.":[234],"Similar":[235],"used":[239],"timing":[243],"strength":[245],"domestication":[248],"bottleneck,":[249],"population":[251],"size":[252],"fluctuations":[253],"rufipogon.":[256,283,375],"To":[257],"further":[258],"explore":[259],"responsible":[262],"Ruf-II,":[268],"modeling":[272],"approach":[273],"applied":[275],"much":[278],"larger":[279],"sample":[280],"result":[285],"suggests":[289],"that,":[290],"during":[291,311],"last":[293,313],"glacial":[294],"period,":[295],"climatic":[299],"vicariance":[300,363],"range.":[306],"xeric":[308,345],"region":[309,346],"formed":[310],"glaciation":[314],"Indochinese":[317],"Peninsula":[318],"which":[319],"isolated":[320],"disjunct":[324],"populations.":[328],"Today":[329],"climate":[331,390,407],"warmer":[333],"wetter,":[335],"continuous.":[343],"roughly":[347],"corresponds":[348],"geographic":[351],"transition":[352],"area":[353],"Ruf-II":[357],"today.":[358],"These":[359],"results":[360],"another":[365],"factor":[366],"contributes":[368],"phylogeographic":[371],"Finally,":[376],"models":[380],"predict":[381],"less":[386],"vulnerable":[387],"future":[389],"change.":[391],"Therefore,":[392],"asymmetric":[393],"considered":[400],"be":[402],"greater":[404],"threat":[405],"than":[406],"change":[408],"conservation":[411]},"counts_by_year":[],"updated_date":"2026-11-11T12:16:26.678958","created_date":"2016-06-24T00:00:00"}
