{"id":"https://openalex.org/W3207113124","doi":"https://doi.org/10.1111/nph.17798","title":"Recent origination of circular RNAs in plants","display_name":"Recent origination of circular RNAs in plants","publication_year":2021,"publication_date":"2021-10-13","ids":{"openalex":"https://openalex.org/W3207113124","doi":"https://doi.org/10.1111/nph.17798","mag":"3207113124","pmid":"https://pubmed.ncbi.nlm.nih.gov/34643280"},"language":"en","primary_location":{"id":"doi:10.1111/nph.17798","doi":"https://doi.org/10.1111/nph.17798","is_oa":true,"landing_page_url":"https://doi.org/10.1111/nph.17798","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/nph.17798","source":{"id":"https://openalex.org/S58631098","display_name":"New Phytologist","issn_l":"0028-646X","issn":["0028-646X","1469-8137"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","jufo-3","ki-jl-1","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"New Phytologist","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/nph.17798","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004870483","display_name":"Qinjie Chu","orcid":"https://orcid.org/0000-0003-1234-3396","observed_orcids":["https://orcid.org/0000-0003-1234-3396"]},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinjie Chu","raw_affiliation_strings":["Institute of Crop Science, Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058 China"],"raw_orcid":"https://orcid.org/0000-0003-1234-3396","affiliations":[{"raw_affiliation_string":"Institute of Crop Science, Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058 China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112843930","display_name":"Yuwen Ding","orcid":"https://orcid.org/0009-0006-8263-0672","observed_orcids":["https://orcid.org/0009-0006-8263-0672"]},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuwen Ding","raw_affiliation_strings":["Institute of Crop Science, Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058 China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Science, Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058 China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067196344","display_name":"Xiaoxu Xu","orcid":"https://orcid.org/0000-0003-4202-1523","observed_orcids":["https://orcid.org/0000-0003-4202-1523"]},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoxu Xu","raw_affiliation_strings":["Institute of Crop Science, Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058 China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Science, Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058 China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083333100","display_name":"Chuyu Ye","orcid":"https://orcid.org/0000-0003-0903-0356","observed_orcids":["https://orcid.org/0000-0003-0903-0356"]},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chu\u2010Yu Ye","raw_affiliation_strings":["Institute of Crop Science, Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058 China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Science, Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058 China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059480616","display_name":"Qian\u2010Hao Zhu","orcid":"https://orcid.org/0000-0002-6505-7417","observed_orcids":["https://orcid.org/0000-0002-6505-7417"]},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210138055","display_name":"Agriculture and Food","ror":"https://ror.org/03n17ds51","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210138055","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Qian\u2010Hao Zhu","raw_affiliation_strings":["Black Mountain Laboratories, CSIRO Agriculture and Food, Canberra, ACT, 2601 Australia"],"raw_orcid":"https://orcid.org/0000-0002-6505-7417","affiliations":[{"raw_affiliation_string":"Black Mountain Laboratories, CSIRO Agriculture and Food, Canberra, ACT, 2601 Australia","institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I4210138055"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058824006","display_name":"Longbiao Guo","orcid":"https://orcid.org/0000-0003-1016-049X","observed_orcids":["https://orcid.org/0000-0003-1016-049X"]},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210160522","display_name":"China National Rice Research Institute","ror":"https://ror.org/05szcn205","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Longbiao Guo","raw_affiliation_strings":["State Key Laboratory for Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 311401 China"],"raw_orcid":"https://orcid.org/0000-0003-1016-049X","affiliations":[{"raw_affiliation_string":"State Key Laboratory for Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 311401 China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210160522","https://openalex.org/I4391767812"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007314776","display_name":"Longjiang Fan","orcid":"https://orcid.org/0000-0003-4846-0500","observed_orcids":["https://orcid.org/0000-0003-4846-0500"]},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Longjiang Fan","raw_affiliation_strings":["Institute of Crop Science, Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058 China"],"raw_orcid":"https://orcid.org/0000-0003-4846-0500","affiliations":[{"raw_affiliation_string":"Institute of Crop Science, Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058 China","institution_ids":["https://openalex.org/I76130692"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5007314776","https://openalex.org/A5058824006"],"corresponding_institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"],"apc_list":{"value":3000,"currency":"USD","value_usd":3000},"apc_paid":null,"fwci":1.4716,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.82966364,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"233","issue":"1","first_page":"515","last_page":"525"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.0017999999690800905,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/circular-rna","display_name":"circular RNA","score":0.9850000143051147},{"id":"https://openalex.org/keywords/rice","display_name":"rice","score":0.9210000038146973},{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.9860000014305115},{"id":"https://openalex.org/keywords/sequence-conservation","display_name":"sequence conservation","score":0.5690000057220459},{"id":"https://openalex.org/keywords/regulatory-rnas","display_name":"regulatory RNAs","score":0.5019999742507935}],"concepts":[{"id":"https://openalex.org/C2780917571","wikidata":"https://www.wikidata.org/wiki/Q7102613","display_name":"Origination","level":2,"score":0.9468700289726257},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6115992069244385},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.49129027128219604},{"id":"https://openalex.org/C58677359","wikidata":"https://www.wikidata.org/wiki/Q7201511","display_name":"Plant evolution","level":4,"score":0.43792515993118286},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38060450553894043},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2518014907836914},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14353474974632263},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.13194671273231506},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.09712383151054382},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1111/nph.17798","doi":"https://doi.org/10.1111/nph.17798","is_oa":true,"landing_page_url":"https://doi.org/10.1111/nph.17798","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/nph.17798","source":{"id":"https://openalex.org/S58631098","display_name":"New Phytologist","issn_l":"0028-646X","issn":["0028-646X","1469-8137"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","jufo-3","ki-jl-1","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"New Phytologist","raw_type":"journal-article"},{"id":"pmid:34643280","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34643280","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The New phytologist","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1111/nph.17798","doi":"https://doi.org/10.1111/nph.17798","is_oa":true,"landing_page_url":"https://doi.org/10.1111/nph.17798","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/nph.17798","source":{"id":"https://openalex.org/S58631098","display_name":"New Phytologist","issn_l":"0028-646X","issn":["0028-646X","1469-8137"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","jufo-3","ki-jl-1","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"New Phytologist","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G245294842","display_name":null,"funder_award_id":"31871589","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G395161780","display_name":null,"funder_award_id":"91740108","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4680842787","display_name":null,"funder_award_id":"2019M662066","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G8431903770","display_name":null,"funder_award_id":"BX20200301","funder_id":"https://openalex.org/F4320335768","funder_display_name":"National Postdoctoral Program for Innovative Talents"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320335768","display_name":"National Postdoctoral Program for Innovative Talents","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3207113124.pdf","grobid_xml":"https://content.openalex.org/works/W3207113124.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W7669837","https://openalex.org/W1521279639","https://openalex.org/W1991082489","https://openalex.org/W2008976996","https://openalex.org/W2013868665","https://openalex.org/W2023139734","https://openalex.org/W2034305079","https://openalex.org/W2058835062","https://openalex.org/W2086055453","https://openalex.org/W2098571862","https://openalex.org/W2100155969","https://openalex.org/W2106208020","https://openalex.org/W2115171906","https://openalex.org/W2123900748","https://openalex.org/W2124985265","https://openalex.org/W2153268494","https://openalex.org/W2159444732","https://openalex.org/W2160378127","https://openalex.org/W2177654732","https://openalex.org/W2464424326","https://openalex.org/W2473991067","https://openalex.org/W2511664109","https://openalex.org/W2530379120","https://openalex.org/W2555483651","https://openalex.org/W2565364968","https://openalex.org/W2596986410","https://openalex.org/W2606970705","https://openalex.org/W2609100383","https://openalex.org/W2763276841","https://openalex.org/W2769011958","https://openalex.org/W2784788330","https://openalex.org/W2883062882","https://openalex.org/W2900945262","https://openalex.org/W2909481667","https://openalex.org/W2925033480","https://openalex.org/W2998465839","https://openalex.org/W3001001417","https://openalex.org/W3020614442","https://openalex.org/W3118996612","https://openalex.org/W3129276151","https://openalex.org/W3135065548","https://openalex.org/W4240367950","https://openalex.org/W6822488256"],"related_works":["https://openalex.org/W2115171906","https://openalex.org/W3203500030","https://openalex.org/W2596986410","https://openalex.org/W2893572166","https://openalex.org/W2760503369","https://openalex.org/W4281646311","https://openalex.org/W4282937543","https://openalex.org/W2788795124","https://openalex.org/W4281868374","https://openalex.org/W2932325414"],"abstract_inverted_index":{"Circular":[0],"RNA":[1,9],"(circRNA)":[2],"is":[3],"a":[4,109],"kind":[5],"of":[6,25,38,56,69,85,89,97,103,106,119,135,138,155],"new":[7,149],"regulatory":[8],"with":[10],"diverse":[11],"biological":[12],"functions.":[13],"Numerous":[14],"circRNAs":[15,27,43,72,92,122,157,160],"have":[16],"been":[17],"identified":[18],"in":[19,48,75,80,123,145],"many":[20],"plant":[21,26,51,156],"species;":[22],"however,":[23],"evolution":[24],"remains":[28],"largely":[29],"unknown.":[30],"In":[31],"this":[32,146],"study,":[33],"we":[34,127],"assembled":[35],"full-length":[36,121],"sequences":[37,57],"6519":[39,71],"rice":[40,91,107],"(Oryza":[41],"sativa)":[42],"and":[44,58,78,158],"analyzed":[45],"their":[46],"conservation":[47],"another":[49],"46":[50],"species":[52],"based":[53,116],"on":[54,117],"comparison":[55],"expression":[59],"patterns.":[60],"We":[61],"found":[62],"that,":[63],"at":[64],"the":[65,70,90,104,114,133,142,152],"genomic":[66],"level,":[67],"8.7%":[68],"were":[73],"conserved":[74],"dicotyledonous":[76],"plants":[77],"49.1%":[79],"Oryza":[81],"genus.":[82],"Meanwhile,":[83],"57.8%":[84],"parental":[86],"protein-coding":[87],"genes":[88],"originated":[93],"recently":[94],"after":[95],"divergence":[96],"monocotyledonous":[98],"plants,":[99],"implying":[100],"recent":[101],"origin":[102],"majority":[105],"circRNAs,":[108],"conclusion":[110],"further":[111,162],"supported":[112],"by":[113],"results":[115,143],"analysis":[118],"4663":[120],"Arabidopsis":[124],"thaliana.":[125],"Accordingly,":[126],"proposed":[128],"three":[129],"models":[130],"to":[131],"address":[132],"origination":[134],"different":[136],"types":[137],"circRNAs.":[139],"Taken":[140],"together,":[141],"obtained":[144],"study":[147],"provide":[148],"insights":[150],"for":[151,161],"evolutionary":[153],"dynamics":[154],"candidate":[159],"functional":[163],"exploration.":[164]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":8}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2021-10-25T00:00:00"}