{"id":"https://openalex.org/W3203026662","doi":"https://doi.org/10.7490/f1000research.1118705.1","title":"Dockstore \u2013 2021 update","display_name":"Dockstore \u2013 2021 update","publication_year":2021,"publication_date":"2021-08-03","ids":{"openalex":"https://openalex.org/W3203026662","doi":"https://doi.org/10.7490/f1000research.1118705.1","mag":"3203026662"},"language":"en","primary_location":{"id":"doi:10.7490/f1000research.1118705.1","doi":"https://doi.org/10.7490/f1000research.1118705.1","is_oa":true,"landing_page_url":"https://doi.org/10.7490/f1000research.1118705.1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},"volume":null,"type":"other","indexed_in":["crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.7490/f1000research.1118705.1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082618105","display_name":"Denis Yuen","orcid":"https://orcid.org/0000-0002-6130-1021","observed_orcids":["https://orcid.org/0000-0002-6130-1021"]},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Denis Yuen","raw_affiliation_strings":["Ontario Institute for Cancer Research, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ontario Institute for Cancer Research, Canada","institution_ids":["https://openalex.org/I112260969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085616061","display_name":"Ash O\u2019Farrell","orcid":"https://orcid.org/0000-0003-4896-1858","observed_orcids":["https://orcid.org/0000-0003-4896-1858"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ash O'Farrell","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003898609","display_name":"Avani Khadilkar","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Avani Khadilkar","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002172839","display_name":"Charles Overbeck","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Charles Overbeck","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025442164","display_name":"C. Reid","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chaz Reid","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"David Steinberg","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"David Steinberg","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028023787","display_name":"Elizabeth A. Sheets","orcid":"https://orcid.org/0000-0002-6335-4952","observed_orcids":["https://orcid.org/0000-0002-6335-4952"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Elizabeth Sheets","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5133210391","display_name":"Gary Luu","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gary Luu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085846818","display_name":"Gregory Hogue","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gregory Hogue","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Kathy Tran","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kathy Tran","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Natalie Perez","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Natalie Perez","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003256035","display_name":"Nnneka Olunwa","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nnneka Olunwa","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Richard Hansen","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Richard Hansen","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046434617","display_name":"Walt Shands","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Walt Shands","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040984959","display_name":"Brian D. O\u2019Connor","orcid":"https://orcid.org/0000-0002-7681-6415","observed_orcids":["https://orcid.org/0000-0002-7681-6415"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Brian O'Connor","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061203088","display_name":"Benedict Paten","orcid":"https://orcid.org/0000-0001-8863-3539","observed_orcids":["https://orcid.org/0000-0001-8863-3539"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Benedict Paten","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5052076713","display_name":"Lincoln David Stein","orcid":"https://orcid.org/0000-0002-1983-4588","observed_orcids":["https://orcid.org/0000-0002-1983-4588"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lincoln Stein","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5082618105"],"corresponding_institution_ids":["https://openalex.org/I112260969"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"10","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dockstore","display_name":"Dockstore","score":0.9990000128746033},{"id":"https://openalex.org/keywords/workflow-reproducibility","display_name":"workflow reproducibility","score":0.7099999785423279},{"id":"https://openalex.org/keywords/common-workflow-language","display_name":"Common Workflow Language","score":0.8960000276565552},{"id":"https://openalex.org/keywords/workflow-description-language","display_name":"Workflow Description Language","score":0.9879999756813049},{"id":"https://openalex.org/keywords/nextflow","display_name":"Nextflow","score":0.925000011920929},{"id":"https://openalex.org/keywords/galaxies","display_name":"galaxies","score":0.5720000267028809},{"id":"https://openalex.org/keywords/docker","display_name":"Docker","score":0.7229999899864197},{"id":"https://openalex.org/keywords/digital-object-identifiers","display_name":"digital object identifiers","score":0.7239999771118164},{"id":"https://openalex.org/keywords/cloud-security","display_name":"cloud security","score":0.8569999933242798},{"id":"https://openalex.org/keywords/orcid","display_name":"ORCID","score":0.7770000100135803}],"concepts":[{"id":"https://openalex.org/C2983643791","wikidata":"https://www.wikidata.org/wiki/Q1999993","display_name":"Open peer review","level":3,"score":0.9030774831771851},{"id":"https://openalex.org/C2992936677","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Plant biology","level":2,"score":0.809333086013794},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.5163037180900574},{"id":"https://openalex.org/C42407357","wikidata":"https://www.wikidata.org/wiki/Q521","display_name":"Physiology","level":1,"score":0.46240904927253723},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4506233334541321},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4141325354576111},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4072926640510559},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.7490/f1000research.1118705.1","doi":"https://doi.org/10.7490/f1000research.1118705.1","is_oa":true,"landing_page_url":"https://doi.org/10.7490/f1000research.1118705.1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},{"id":"doi:10.7490/f1000research.1118705.1","doi":"https://doi.org/10.7490/f1000research.1118705.1","is_oa":true,"landing_page_url":"https://doi.org/10.7490/f1000research.1118705.1","pdf_url":null,"source":{"id":"https://openalex.org/S7407050752","display_name":"Faculty of 1000 Research Ltd","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Other"},{"id":"mag:3203026662","doi":null,"is_oa":true,"landing_page_url":"https://f1000research.com/posters/10-738","pdf_url":null,"source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357","https://openalex.org/P4310320547"],"host_organization_lineage_names":["Faculty of 1000","Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":"F1000Research","raw_type":null}],"best_oa_location":{"id":"doi:10.7490/f1000research.1118705.1","doi":"https://doi.org/10.7490/f1000research.1118705.1","is_oa":true,"landing_page_url":"https://doi.org/10.7490/f1000research.1118705.1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4416523917","https://openalex.org/W4416503169","https://openalex.org/W2968619469","https://openalex.org/W3162801148","https://openalex.org/W7130677067","https://openalex.org/W3049769122","https://openalex.org/W6931690939","https://openalex.org/W6912695931","https://openalex.org/W2576576365","https://openalex.org/W3024120185"],"abstract_inverted_index":{"Dockstore":[0,30,51,72,126],"is":[1],"an":[2],"open":[3],"source":[4],"platform":[5],"for":[6,76,80,101,136,143,186],"sharing":[7],"bioinformatics":[8],"tools":[9],"and":[10,28,36,94,130,168,193],"workflows":[11,34,119,154],"using":[12],"popular":[13],"descriptor":[14],"languages":[15],"such":[16,159],"as":[17,160],"the":[18,50,67,109,149,180],"Common":[19],"Workflow":[20,23],"Language":[21,25],"(CWL),":[22],"Description":[24],"(WDL),":[26],"Nextflow,":[27],"Galaxy.":[29,169],"aims":[31],"at":[32],"making":[33],"reproducible":[35],"runnable":[37],"in":[38,61],"any":[39],"environment":[40],"that":[41,49],"supports":[42],"Docker.":[43],"Here,":[44],"we":[45],"highlight":[46],"new":[47],"features":[48],"team":[52],"has":[53,73,127,172,183],"been":[54,106,173,184],"working":[55],"on":[56,155,179],"since":[57],"our":[58],"last":[59],"talk":[60],"2019.":[62],"For":[63],"better":[64],"support":[65,75,171],"of":[66,69,83,88,123],"lifecycle":[68],"a":[70,89],"workflow,":[71],"added":[74,157,174,185],"GitHub":[77],"apps":[78],"allowing":[79],"automated":[81],"update":[82],"workflow":[84,90],"content.":[85],"Selected":[86],"versions":[87],"can":[91,147],"be":[92],"snapshotted":[93],"exported":[95],"to":[96,98,108,117,152,175],"Zenodo":[97],"mint":[99],"DOIs":[100],"publication.":[102],"Improvements":[103],"have":[104],"also":[105,140],"made":[107],"platform's":[110],"cloud":[111],"security":[112],"in-line":[113],"with":[114],"NIH":[115],"recommendations":[116],"keep":[118],"safe.":[120],"As":[121],"examples":[122],"usability":[124],"improvements,":[125],"revamped":[128],"organizations":[129],"home":[131],"pages":[132],"highlighting":[133],"updated":[134],"content":[135],"logged-in":[137],"users":[138,146,178],"while":[139],"adding":[141],"notifications":[142],"events.":[144],"Finally,":[145],"use":[148],"launch-with":[150],"feature":[151],"run":[153],"newly":[156],"platforms":[158],"CGC,":[161],"Cavatica,":[162],"AnVIL,":[163],"Nextflow":[164],"Tower,":[165],"BioData":[166],"Catalyst,":[167],"ORCID":[170],"help":[176],"identify":[177],"site.":[181],"Support":[182],"WDL":[187],"1.0,":[188],"CWL":[189],"1.1,":[190],"Nextflow\u2019s":[191],"DSL2,":[192],"GA4GH\u2019s":[194],"TRS":[195],"V2":[196],"standard.":[197]},"counts_by_year":[],"updated_date":"2026-11-06T12:05:46.655746","created_date":"2021-10-11T00:00:00"}