{"id":"https://openalex.org/W3184328552","doi":"https://doi.org/10.17504/protocols.io.bmbik2ke","title":"SHARE-seq V1 v1","display_name":"SHARE-seq V1 v1","publication_year":2020,"publication_date":"2020-09-13","ids":{"openalex":"https://openalex.org/W3184328552","doi":"https://doi.org/10.17504/protocols.io.bmbik2ke","mag":"3184328552"},"language":"en","primary_location":{"id":"doi:10.17504/protocols.io.bmbik2ke","doi":"https://doi.org/10.17504/protocols.io.bmbik2ke","is_oa":true,"landing_page_url":"https://doi.org/10.17504/protocols.io.bmbik2ke","pdf_url":"https://www.protocols.io/view/share-seq-v1-bmbik2ke.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.protocols.io/view/share-seq-v1-bmbik2ke.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100661594","display_name":"Sai Ma","orcid":"https://orcid.org/0000-0002-9785-7929","observed_orcids":["https://orcid.org/0000-0002-9785-7929","https://orcid.org/0000-0003-2565-3609","https://orcid.org/0000-0001-9407-7217"]},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I183934855","display_name":"Genentech","ror":"https://ror.org/04gndp242","country_code":"US","type":"company","lineage":["https://openalex.org/I118019719","https://openalex.org/I129302853","https://openalex.org/I183934855"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sai Ma","raw_affiliation_strings":["Broad Institute of MIT and Harvard ; Harvard ; MIT ;","Broad Institute of MIT and Harvard; Harvard; MIT; HHMI; Genentech Human Cell Atlas Method Development Community SHAREseq"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Broad Institute of MIT and Harvard ; Harvard ; MIT ;","institution_ids":["https://openalex.org/I107606265","https://openalex.org/I136199984"]},{"raw_affiliation_string":"Broad Institute of MIT and Harvard; Harvard; MIT; HHMI; Genentech Human Cell Atlas Method Development Community SHAREseq","institution_ids":["https://openalex.org/I107606265","https://openalex.org/I1344073410","https://openalex.org/I136199984","https://openalex.org/I183934855","https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004067604","display_name":"Aviv Regev","orcid":"https://orcid.org/0000-0003-3293-3158","observed_orcids":["https://orcid.org/0000-0003-3293-3158"]},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I183934855","display_name":"Genentech","ror":"https://ror.org/04gndp242","country_code":"US","type":"company","lineage":["https://openalex.org/I118019719","https://openalex.org/I129302853","https://openalex.org/I183934855"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aviv Regev","raw_affiliation_strings":["Broad Institute of MIT and Harvard ; Harvard ; MIT ;","Broad Institute of MIT and Harvard; Harvard; MIT; HHMI; Genentech Human Cell Atlas Method Development Community SHAREseq"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Broad Institute of MIT and Harvard ; Harvard ; MIT ;","institution_ids":["https://openalex.org/I107606265","https://openalex.org/I136199984"]},{"raw_affiliation_string":"Broad Institute of MIT and Harvard; Harvard; MIT; HHMI; Genentech Human Cell Atlas Method Development Community SHAREseq","institution_ids":["https://openalex.org/I107606265","https://openalex.org/I1344073410","https://openalex.org/I136199984","https://openalex.org/I183934855","https://openalex.org/I63966007"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059831707","display_name":"Jason D. Buenrostro","orcid":"https://orcid.org/0000-0001-9958-3987","observed_orcids":["https://orcid.org/0000-0001-9958-3987"]},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I183934855","display_name":"Genentech","ror":"https://ror.org/04gndp242","country_code":"US","type":"company","lineage":["https://openalex.org/I118019719","https://openalex.org/I129302853","https://openalex.org/I183934855"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason Buenrostro","raw_affiliation_strings":["Broad Institute of MIT and Harvard ; Harvard ; MIT ;","Broad Institute of MIT and Harvard; Harvard; MIT; HHMI; Genentech Human Cell Atlas Method Development Community SHAREseq"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Broad Institute of MIT and Harvard ; Harvard ; MIT ;","institution_ids":["https://openalex.org/I107606265","https://openalex.org/I136199984"]},{"raw_affiliation_string":"Broad Institute of MIT and Harvard; Harvard; MIT; HHMI; Genentech Human Cell Atlas Method Development Community SHAREseq","institution_ids":["https://openalex.org/I107606265","https://openalex.org/I1344073410","https://openalex.org/I136199984","https://openalex.org/I183934855","https://openalex.org/I63966007"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.6309000253677368,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.6309000253677368,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.33739998936653137,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.00279999990016222,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin-accessibility","display_name":"chromatin accessibility","score":0.8690000176429749},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"gene expression profiling","score":0.8299999833106995},{"id":"https://openalex.org/keywords/single-cell-multi-omics","display_name":"single-cell multi-omics","score":0.7080000042915344},{"id":"https://openalex.org/keywords/single-cell-rna-sequencing","display_name":"single-cell RNA sequencing","score":0.46799999475479126},{"id":"https://openalex.org/keywords/single-cell-atac-seq","display_name":"single-cell ATAC-seq","score":0.7549999952316284}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3824225068092346}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.17504/protocols.io.bmbik2ke","doi":"https://doi.org/10.17504/protocols.io.bmbik2ke","is_oa":true,"landing_page_url":"https://doi.org/10.17504/protocols.io.bmbik2ke","pdf_url":"https://www.protocols.io/view/share-seq-v1-bmbik2ke.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.17504/protocols.io.bmbik2ke","doi":"https://doi.org/10.17504/protocols.io.bmbik2ke","is_oa":true,"landing_page_url":"https://doi.org/10.17504/protocols.io.bmbik2ke","pdf_url":"https://www.protocols.io/view/share-seq-v1-bmbik2ke.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3184328552.pdf","grobid_xml":"https://content.openalex.org/works/W3184328552.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3105523045","https://openalex.org/W7133298245","https://openalex.org/W6964781563","https://openalex.org/W4404568810","https://openalex.org/W4411166275","https://openalex.org/W3093858607","https://openalex.org/W4399824855","https://openalex.org/W6902935648","https://openalex.org/W4409190772","https://openalex.org/W6917342029"],"abstract_inverted_index":{"SHARE-seq":[0],"for":[1],"joint":[2],"profiling":[3],"of":[4],"chromatin":[5],"accessibility":[6],"and":[7],"gene":[8],"expression":[9],"at":[10],"scale.":[11]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-11-06T12:05:46.655746","created_date":"2021-08-02T00:00:00"}
