{"id":"https://openalex.org/W3145548609","doi":"https://doi.org/10.1094/pdis-02-21-0320-pdn","title":"First Report of Squash vein yellowing virus Naturally Infecting Butternut Squash (Cucurbita moschata) in Texas","display_name":"First Report of Squash vein yellowing virus Naturally Infecting Butternut Squash (Cucurbita moschata) in Texas","publication_year":2021,"publication_date":"2021-04-07","ids":{"openalex":"https://openalex.org/W3145548609","doi":"https://doi.org/10.1094/pdis-02-21-0320-pdn","mag":"3145548609","pmid":"https://pubmed.ncbi.nlm.nih.gov/33823612"},"language":"en","primary_location":{"id":"doi:10.1094/pdis-02-21-0320-pdn","doi":"https://doi.org/10.1094/pdis-02-21-0320-pdn","is_oa":false,"landing_page_url":"https://doi.org/10.1094/pdis-02-21-0320-pdn","pdf_url":null,"source":{"id":"https://openalex.org/S135458494","display_name":"Plant Disease","issn_l":"0191-2917","issn":["0191-2917","1943-7692"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-1","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320276","host_organization_name":"American Phytopathological Society","host_organization_lineage":["https://openalex.org/P4310320276"],"host_organization_lineage_names":["American Phytopathological Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Disease","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032748287","display_name":"Regina N. Hernandez","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405263145","display_name":"ELLIS Institute T\u00fcbingen","ror":"https://ror.org/036z3g533","country_code":"DE","type":"other","lineage":["https://openalex.org/I4405263145"]},{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Regina N. Hernandez","raw_affiliation_strings":["Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX 77843","Wilbur-Ellis Company Inc., Edinburg, TX 78541"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX 77843","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Wilbur-Ellis Company Inc., Edinburg, TX 78541","institution_ids":["https://openalex.org/I4405263145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014959425","display_name":"Thomas Isakeit","orcid":"https://orcid.org/0000-0002-6809-9954","observed_orcids":["https://orcid.org/0000-0002-6809-9954"]},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas Isakeit","raw_affiliation_strings":["Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX 77843"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX 77843","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000228983","display_name":"Maher Al Rwahnih","orcid":"https://orcid.org/0000-0003-1589-9234","observed_orcids":["https://orcid.org/0000-0003-1589-9234"]},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maher Al Rwahnih","raw_affiliation_strings":["Department of Plant Pathology, University of California, Davis, CA 95616"],"raw_orcid":"https://orcid.org/0000-0003-1589-9234","affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, University of California, Davis, CA 95616","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056244665","display_name":"Rick Hernandez","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405263145","display_name":"ELLIS Institute T\u00fcbingen","ror":"https://ror.org/036z3g533","country_code":"DE","type":"other","lineage":["https://openalex.org/I4405263145"]},{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Rick Hernandez","raw_affiliation_strings":["Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX 77843","Wilbur-Ellis Company Inc., Edinburg, TX 78541"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX 77843","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Wilbur-Ellis Company Inc., Edinburg, TX 78541","institution_ids":["https://openalex.org/I4405263145"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043490390","display_name":"Olufemi J. Alabi","orcid":"https://orcid.org/0000-0002-2471-7052","observed_orcids":["https://orcid.org/0000-0002-2471-7052"]},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Olufemi J. Alabi","raw_affiliation_strings":["Department of Plant Pathology and Microbiology, Texas A&M AgriLife Research and Extension Center, Weslaco, TX 78596"],"raw_orcid":"https://orcid.org/0000-0002-2471-7052","affiliations":[{"raw_affiliation_string":"Department of Plant Pathology and Microbiology, Texas A&M AgriLife Research and Extension Center, Weslaco, TX 78596","institution_ids":["https://openalex.org/I91045830"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4506,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.60666561,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"105","issue":"9","first_page":"2738","last_page":"2738"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13220","display_name":"Plant and Fungal Interactions Research","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11750","display_name":"Phytoplasmas and Hemiptera pathogens","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cucurbita-moschata","display_name":"Cucurbita moschata","score":0.9980000257492065},{"id":"https://openalex.org/keywords/first-report","display_name":"first report","score":0.5450000166893005},{"id":"https://openalex.org/keywords/texas","display_name":"Texas","score":0.5519999861717224},{"id":"https://openalex.org/keywords/coat-protein-gene","display_name":"coat protein gene","score":0.9879999756813049},{"id":"https://openalex.org/keywords/virus-identification","display_name":"virus identification","score":0.41600000858306885},{"id":"https://openalex.org/keywords/plant-viruses","display_name":"plant viruses","score":0.3449999988079071},{"id":"https://openalex.org/keywords/squash","display_name":"squash","score":0.37400001287460327}],"concepts":[{"id":"https://openalex.org/C190114075","wikidata":"https://www.wikidata.org/wiki/Q133201","display_name":"Squash","level":2,"score":0.8055908679962158},{"id":"https://openalex.org/C2778400541","wikidata":"https://www.wikidata.org/wiki/Q160571","display_name":"Cucurbita moschata","level":3,"score":0.6807772517204285},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42349156737327576},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.3463314175605774},{"id":"https://openalex.org/C144027150","wikidata":"https://www.wikidata.org/wiki/Q48803","display_name":"Horticulture","level":1,"score":0.2968515157699585},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2124926745891571},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.14526569843292236},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0733070969581604},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1094/pdis-02-21-0320-pdn","doi":"https://doi.org/10.1094/pdis-02-21-0320-pdn","is_oa":false,"landing_page_url":"https://doi.org/10.1094/pdis-02-21-0320-pdn","pdf_url":null,"source":{"id":"https://openalex.org/S135458494","display_name":"Plant Disease","issn_l":"0191-2917","issn":["0191-2917","1943-7692"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-1","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320276","host_organization_name":"American Phytopathological Society","host_organization_lineage":["https://openalex.org/P4310320276"],"host_organization_lineage_names":["American Phytopathological Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Disease","raw_type":"journal-article"},{"id":"pmid:33823612","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33823612","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant disease","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.958299994468689}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W2006807779","https://openalex.org/W2011767067","https://openalex.org/W2015823093","https://openalex.org/W2022839178","https://openalex.org/W2048775024","https://openalex.org/W2154899132","https://openalex.org/W2792347106"],"related_works":["https://openalex.org/W1980814392","https://openalex.org/W4319075137","https://openalex.org/W7163284496","https://openalex.org/W2098393958","https://openalex.org/W1977042564","https://openalex.org/W3118828084","https://openalex.org/W2006648731","https://openalex.org/W2030904994","https://openalex.org/W23844446","https://openalex.org/W6982322337"],"abstract_inverted_index":{".":[0],"To":[1],"confirm":[2],"the":[3,11,30,67,93,98,117,124,160,169,229,241,271,294,302,310,323],"HTS":[4,68],"results,":[5],"total":[6],"nucleic":[7],"acid":[8],"extracts":[9],"from":[10,14,116,123,133,266],"cucurbit":[12,329],"samples":[13,122,135],"all":[15],"seven":[16],"fields":[17,330],"(n":[18],"=":[19],"46)":[20],"were":[21,113,136],"used":[22,45],"for":[23],"cDNA":[24,34,43],"synthesis":[25],"with":[26,51,177,184,202,211,220],"random":[27],"hexamers":[28],"and":[29,58,79,88,97,143,155,180,205,224,231,263,278,291,307,331],"PrimeScript":[31],"1st":[32],"strand":[33],"Synthesis":[35],"Kit":[36],"(Takara":[37,56],"Bio).":[38],"A":[39],"1-\u03bcL":[40],"aliquot":[41],"of":[42,61,92,105,164,187,195,214,234,244,301,305,312,325,334],"was":[44,254],"in":[46,218,246,250,257,270,315,327],"12.5-\u03bcL":[47],"PCR":[48],"reaction":[49],"volumes":[50],"PrimeSTAR":[52],"GXL":[53],"DNA":[54,110],"Polymerase":[55],"Bio)":[57],"two":[59,134],"pairs":[60,73],"SqVYV-specific":[62],"primers":[63],"designed":[64],"based":[65],"on":[66],"derived":[69],"contigs.":[70],"The":[71,108,192,296],"primer":[72,131],"SqYVV-v4762:":[74],"5'-CTGGATTCTGCTGGAAGATCA":[75],"&":[76,82],"SqYVV-c5512:":[77],"5'-CCACCATTAAGGCCATCAAAC":[78],"SqYVV-v8478:":[80],"5'-TTTCTGGGCAAACAAACATGG":[81],"SqYVV-c9715:":[83],"5'-TTCAGCGACGTCAAGTGAG":[84],"targeted":[85],"~0.75":[86],"kb":[87,90],"~1.2":[89],"fragments":[91],"cylindrical":[94],"inclusion":[95],"(CI)":[96],"complete":[99,161],"coat":[100],"protein":[101],"(CP)":[102],"gene":[103],"sequences":[104,153,172,186,213],"SqVYV,":[106],"respectively.":[107,238],"expected":[109],"band":[111],"sizes":[112],"obtained":[114],"only":[115],"five":[118],"symptomatic":[119],"butternut":[120,251],"squash":[121],"Hidalgo":[125],"Co.":[126],"field.":[127],"Two":[128],"amplicons":[129],"per":[130],"pair":[132],"cloned":[137],"into":[138],"pJET1.2/Blunt":[139],"vector":[140],"(Life":[141],"Technologies)":[142],"bidirectionally":[144],"Sanger":[145],"sequenced,":[146],"generating":[147],"753":[148],"nt":[149,157,207],"partial":[150,170],"CI":[151,171],"specific":[152],"(MW584341-342)":[154],"1,238":[156],"that":[158],"encompassed":[159],"CP":[162,193],"(MW584343-344)":[163],"SqVYV.":[165],"In":[166],"pairwise":[167],"comparisons,":[168],"shared":[173,198],"100%":[174,199],"nt/aa":[175,182,200,235],"identity":[176,183,201,236],"each":[178,203],"other":[179,204,268],"98-99%":[181],"corresponding":[185,212],"SqVYV":[188,216,245,253,306,326],"isolate":[189],"IL":[190,222],"(KT721735).":[191],"cistron":[194],"TX":[196],"isolates":[197,217,221],"90-98%":[206],"(97-100%":[208],"aa)":[209],"identities":[210],"several":[215],"GenBank,":[219],"(KT721735)":[223],"Florida":[225,258],"(EU259611)":[226],"being":[227],"at":[228],"high":[230],"low":[232],"spectrum":[233],"values,":[237],"This":[239],"is":[240],"first":[242,255],"report":[243],"Texas,":[247],"naturally":[248],"occurring":[249],"squash.":[252],"discovered":[256],"(Adkins":[259,273],"et":[260,274,282,288],"al.":[261,275,283,289],"2007)":[262],"subsequently":[264],"reported":[265],"few":[267],"states":[269],"U.S.":[272],"2013;":[276],"Egel":[277],"Adkins":[279],"2007;":[280],"Batuman":[281],"2015),":[284],"Puerto":[285],"Rico":[286],"(Acevedo":[287],"2013),":[290],"locations":[292],"around":[293],"world.":[295],"finding":[297],"shows":[298],"an":[299,332],"expansion":[300],"geographical":[303],"range":[304],"adds":[308],"to":[309,321],"repertoire":[311],"cucurbit-infecting":[313],"viruses":[314],"Texas.":[316],"Further":[317],"studies":[318],"are":[319],"needed":[320],"determine":[322],"prevalence":[324],"Texas":[328],"assessment":[333],"their":[335],"genetic":[336],"diversity.":[337]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2021-04-13T00:00:00"}