{"id":"https://openalex.org/W3133627476","doi":"https://doi.org/10.1128/jcm.00329-21","title":"New Pneumococcal Serotype 15D","display_name":"New Pneumococcal Serotype 15D","publication_year":2021,"publication_date":"2021-03-04","ids":{"openalex":"https://openalex.org/W3133627476","doi":"https://doi.org/10.1128/jcm.00329-21","mag":"3133627476","pmid":"https://pubmed.ncbi.nlm.nih.gov/33658265","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/8091843"},"language":"en","primary_location":{"id":"doi:10.1128/jcm.00329-21","doi":"https://doi.org/10.1128/jcm.00329-21","is_oa":false,"landing_page_url":"https://doi.org/10.1128/jcm.00329-21","pdf_url":null,"source":{"id":"https://openalex.org/S53087977","display_name":"Journal of Clinical Microbiology","issn_l":"0095-1137","issn":["0095-1137","1070-633X","1098-660X"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-2","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Microbiology","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8091843","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059297343","display_name":"Fabiana Cristina Pimenta","orcid":"https://orcid.org/0000-0002-9106-5824","observed_orcids":["https://orcid.org/0000-0002-9106-5824"]},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"government","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fabiana Pimenta","raw_affiliation_strings":["Centers for Disease Control and Prevention, Respiratory Diseases Branch, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Respiratory Diseases Branch, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028227797","display_name":"Benild Moiane","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210118037","display_name":"Manhi\u00e7a Health Research Centre","ror":"https://ror.org/0287jnj14","country_code":"MZ","type":"facility","lineage":["https://openalex.org/I4210118037"]}],"countries":["MZ"],"is_corresponding":false,"raw_author_name":"Benild Moiane","raw_affiliation_strings":["Centro de Investiga\u00e7\u00e3o em Sa\u00fade da Manhi\u00e7a (CISM), Maputo, Mozambique"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Investiga\u00e7\u00e3o em Sa\u00fade da Manhi\u00e7a (CISM), Maputo, Mozambique","institution_ids":["https://openalex.org/I4210118037"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030650222","display_name":"Robert E. Gertz","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"government","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert E. Gertz","raw_affiliation_strings":["Centers for Disease Control and Prevention, Respiratory Diseases Branch, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Respiratory Diseases Branch, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063938865","display_name":"Sopio Chochua","orcid":"https://orcid.org/0000-0001-8222-7353","observed_orcids":["https://orcid.org/0000-0001-8222-7353"]},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"government","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sopio Chochua","raw_affiliation_strings":["Centers for Disease Control and Prevention, Respiratory Diseases Branch, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Respiratory Diseases Branch, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009382715","display_name":"Paula M. Snippes Vagnone","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210144997","display_name":"Minnesota Department of Health","ror":"https://ror.org/04g43x563","country_code":"US","type":"government","lineage":["https://openalex.org/I4210144997"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paula M. Snippes Vagnone","raw_affiliation_strings":["Minnesota Department of Health, St. Paul, Minnesota, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Minnesota Department of Health, St. Paul, Minnesota, USA","institution_ids":["https://openalex.org/I4210144997"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011151803","display_name":"Ruth Lynfield","orcid":"https://orcid.org/0000-0002-7741-1284","observed_orcids":["https://orcid.org/0000-0002-7741-1284"]},"institutions":[{"id":"https://openalex.org/I4210144997","display_name":"Minnesota Department of Health","ror":"https://ror.org/04g43x563","country_code":"US","type":"government","lineage":["https://openalex.org/I4210144997"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruth Lynfield","raw_affiliation_strings":["Minnesota Department of Health, St. Paul, Minnesota, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Minnesota Department of Health, St. Paul, Minnesota, USA","institution_ids":["https://openalex.org/I4210144997"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039781450","display_name":"Betuel Siga\u00faque","orcid":"https://orcid.org/0000-0001-6012-7052","observed_orcids":["https://orcid.org/0000-0001-6012-7052"]},"institutions":[{"id":"https://openalex.org/I4210118037","display_name":"Manhi\u00e7a Health Research Centre","ror":"https://ror.org/0287jnj14","country_code":"MZ","type":"facility","lineage":["https://openalex.org/I4210118037"]}],"countries":["MZ"],"is_corresponding":false,"raw_author_name":"Betuel Siga\u00faque","raw_affiliation_strings":["Centro de Investiga\u00e7\u00e3o em Sa\u00fade da Manhi\u00e7a (CISM), Maputo, Mozambique"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Investiga\u00e7\u00e3o em Sa\u00fade da Manhi\u00e7a (CISM), Maputo, Mozambique","institution_ids":["https://openalex.org/I4210118037"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083241862","display_name":"Maria da Gl\u00f3ria Carvalho","orcid":"https://orcid.org/0000-0001-5890-8095","observed_orcids":["https://orcid.org/0000-0001-5890-8095"]},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"government","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maria da Gloria Carvalho","raw_affiliation_strings":["Centers for Disease Control and Prevention, Respiratory Diseases Branch, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Respiratory Diseases Branch, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071279105","display_name":"Bernard Beall","orcid":"https://orcid.org/0000-0001-5315-1070","observed_orcids":["https://orcid.org/0000-0001-5315-1070"]},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"government","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bernard Beall","raw_affiliation_strings":["Centers for Disease Control and Prevention, Respiratory Diseases Branch, Atlanta, Georgia, USA"],"raw_orcid":"https://orcid.org/0000-0001-5315-1070","affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Respiratory Diseases Branch, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I1289490764"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":4.3185,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.95418475,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"59","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10654","display_name":"Pneumonia and Respiratory Infections","score":0.9585000276565552,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10654","display_name":"Pneumonia and Respiratory Infections","score":0.9585000276565552,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11688","display_name":"Microbial infections and disease research","score":0.01810000091791153,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10873","display_name":"Bacterial Infections and Vaccines","score":0.006599999964237213,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/streptococcus-pneumoniae","display_name":"Streptococcus pneumoniae","score":0.9290000200271606},{"id":"https://openalex.org/keywords/o-acetylation","display_name":"O-acetylation","score":0.9509999752044678},{"id":"https://openalex.org/keywords/quellung-reaction","display_name":"Quellung reaction","score":0.5910000205039978},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"whole genome sequencing","score":0.5080000162124634}],"concepts":[{"id":"https://openalex.org/C10389963","wikidata":"https://www.wikidata.org/wiki/Q848328","display_name":"Serotype","level":2,"score":0.8511269092559814},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5697895288467407},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.5112342834472656},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.4764944911003113},{"id":"https://openalex.org/C2781253189","wikidata":"https://www.wikidata.org/wiki/Q221179","display_name":"Streptococcus pneumoniae","level":3,"score":0.45051732659339905},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.43299034237861633},{"id":"https://openalex.org/C2779213145","wikidata":"https://www.wikidata.org/wiki/Q414109","display_name":"Rhamnose","level":3,"score":0.41406819224357605},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.32163000106811523},{"id":"https://openalex.org/C100817775","wikidata":"https://www.wikidata.org/wiki/Q134219","display_name":"Polysaccharide","level":2,"score":0.17230385541915894},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011008","descriptor_name":"Pneumococcal Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012703","descriptor_name":"Serotyping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013296","descriptor_name":"Streptococcus pneumoniae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016667","descriptor_name":"Bacterial Capsules","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022242","descriptor_name":"Pneumococcal Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D065288","descriptor_name":"Serogroup","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1128/jcm.00329-21","doi":"https://doi.org/10.1128/jcm.00329-21","is_oa":false,"landing_page_url":"https://doi.org/10.1128/jcm.00329-21","pdf_url":null,"source":{"id":"https://openalex.org/S53087977","display_name":"Journal of Clinical Microbiology","issn_l":"0095-1137","issn":["0095-1137","1070-633X","1098-660X"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-2","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Microbiology","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8091843","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8091843","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"J Clin Microbiol","raw_type":"Text"},{"id":"pmid:33658265","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33658265","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of clinical microbiology","raw_type":"Letter"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8091843","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8091843","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"J Clin Microbiol","raw_type":"Text"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332162","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1456171542","https://openalex.org/W1972265710","https://openalex.org/W2044417671","https://openalex.org/W2045460581","https://openalex.org/W2084850935","https://openalex.org/W2096093282","https://openalex.org/W2108437815","https://openalex.org/W2114853012","https://openalex.org/W3097336202"],"related_works":["https://openalex.org/W2108437815","https://openalex.org/W2687760102","https://openalex.org/W7122678023","https://openalex.org/W2326896698","https://openalex.org/W4284878969","https://openalex.org/W7100507709","https://openalex.org/W2003592988","https://openalex.org/W3194268524","https://openalex.org/W2058619603","https://openalex.org/W2160495130"],"abstract_inverted_index":{"The":[0,77,103,188],"pneumococcal":[1,206],"serogroup":[2,237],"15":[3,238],"comprises":[4],"four":[5,24,47,200],"capsular":[6],"polysaccharide":[7,116],"serotypes":[8,25,48,100,106,127,201],"(15A,":[9],"15B,":[10],"15C,":[11],"15F)":[12],"that":[13,55,176,211,224],"collectively":[14],"account":[15],"for":[16],"an":[17,50,57],"impactful":[18],"disease":[19],"burden":[20],"(1,":[21],"2).":[22],"These":[23],"are":[26],"defined":[27],"by":[28,112,120],"Quellung":[29],"reaction":[30],"typing,":[31],"employing":[32],"specific":[33],"serologic":[34,181],"factor":[35],"sera":[36],"to":[37,131,153,179],"visualize":[38],"the":[39,89,115,121,125,142,163,166,180,194,212,221],"capsule":[40],"(3)":[41],"(Table":[42],"1).":[43,102],"Each":[44],"of":[45,97,114,134,165],"these":[46,94,199],"shares":[49],"identical":[51,58],"pentasaccharide":[52],"repeat":[53,80,137],"unit":[54],"forms":[56],"linear":[59],"structure":[60,70],"in":[61,71,117,145,157,202,231],"types":[62,72],"15A":[63,147,184],"and":[64,66,74,85,108,185,218,220],"15F,":[65],"a":[67,135],"distinct":[68,79],"branched":[69],"15B":[73,107,119],"15C":[75,109],"(4).":[76],"two":[78,95,126],"oligosaccharide":[81],"polymerase":[82],"genes,":[83],"wzy15BC":[84],"wzy15AF":[86],"(4),":[87,175],"provide":[88],"basic":[90],"structural":[91],"difference":[92,104,182],"between":[93,105,183],"pairs":[96],"highly":[98],"related":[99],"(Fig.":[101,234],"is":[110,169],"dictated":[111],"O-acetylation":[113],"serotype":[118,146,158,232],"wciZ-encoded":[122],"enzyme,":[123],"with":[124,193],"frequently":[128],"interconverting":[129],"due":[130],"reversible":[132],"frameshifting":[133],"TA":[136],"within":[138],"wciZ":[139,143,195],"(5).":[140],"Similarly,":[141],"gene":[144,223],"contains":[148],"multiple":[149],"inactivating":[150],"mutations":[151],"compared":[152],"its":[154],"functional":[155],"counterpart":[156],"15F":[159,186,233],"(4,":[160],"6).":[161],"At":[162],"end":[164],"cps15F":[167],"operon":[168],"another":[170],"putative":[171],"O-acetyltransferase":[172],"gene,":[173],"wcjE":[174],"potentially":[177],"contributes":[178],"strains.":[187],"wzy":[189],"primary":[190],"target,":[191,197],"combined":[192],"secondary":[196],"distinguishes":[198],"our":[203],"whole-genome":[204],"sequence-based":[205],"bioinformatic":[207],"pipeline":[208],"(1).":[209],"Note":[210],"incomplete":[213],"rhamnose":[214,243],"biosynthetic":[215],"apparatus":[216],"(rmlB":[217],"rmlD)":[219],"glf":[222],"encodes":[225],"UDP-galactopyranose":[226],"serve":[227],"no":[228],"apparent":[229],"functions":[230],"1),":[235],"since":[236],"capsules":[239],"do":[240],"not":[241],"contain":[242],"or":[244],"galactofuranose":[245],"(7,":[246],"8).":[247]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":1}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2021-03-15T00:00:00"}
