{"id":"https://openalex.org/W3132925137","doi":null,"title":"Dynamics of Phytoplasma Effector Interactions with Plant TCP Transcription Factor (sub)classes","display_name":"Dynamics of Phytoplasma Effector Interactions with Plant TCP Transcription Factor (sub)classes","publication_year":2019,"publication_date":"2019-09-01","ids":{"openalex":"https://openalex.org/W3132925137","mag":"3132925137"},"language":"en","primary_location":{"id":"pmh:oai:ueaeprints.uea.ac.uk:79224","doi":null,"is_oa":true,"landing_page_url":"https://ueaeprints.uea.ac.uk/id/eprint/79224/1/2020CapdevielleSPhD.pdf","pdf_url":"https://ueaeprints.uea.ac.uk/id/eprint/79224/1/2020CapdevielleSPhD.pdf","source":{"id":"https://openalex.org/S4306400384","display_name":"UEA Digital Repository (University of East Anglia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1118541","host_organization_name":"University of East Anglia","host_organization_lineage":["https://openalex.org/I1118541"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis"},"volume":null,"type":"dissertation","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://ueaeprints.uea.ac.uk/id/eprint/79224/1/2020CapdevielleSPhD.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002286259","display_name":"Sylvain Capdevielle","orcid":"https://orcid.org/0000-0002-3822-8890","observed_orcids":["https://orcid.org/0000-0002-3822-8890"]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Sylvain Capdevielle","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-3822-8890","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5002286259"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11750","display_name":"Phytoplasmas and Hemiptera pathogens","score":0.9761000275611877,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11750","display_name":"Phytoplasmas and Hemiptera pathogens","score":0.9761000275611877,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.01850000023841858,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.002400000113993883,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tcp-transcription-factors","display_name":"TCP transcription factors","score":0.8100000023841858},{"id":"https://openalex.org/keywords/helix-loop-helix-motif","display_name":"helix-loop-helix motif","score":0.8259999752044678},{"id":"https://openalex.org/keywords/protein-destabilization","display_name":"protein destabilization","score":0.5479999780654907},{"id":"https://openalex.org/keywords/aster-yellows-phytoplasma","display_name":"aster yellows phytoplasma","score":0.8100000023841858},{"id":"https://openalex.org/keywords/witches-broom","display_name":"witches' broom","score":0.7860000133514404},{"id":"https://openalex.org/keywords/horizontal-gene-transfer","display_name":"horizontal gene transfer","score":0.7419999837875366}],"concepts":[{"id":"https://openalex.org/C2778533604","wikidata":"https://www.wikidata.org/wiki/Q132782","display_name":"Phytoplasma","level":5,"score":0.9446303844451904},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8592845797538757},{"id":"https://openalex.org/C51785407","wikidata":"https://www.wikidata.org/wiki/Q2627568","display_name":"Effector","level":2,"score":0.8571699857711792},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5945151448249817},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.5639289021492004},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5267704725265503},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.4159994125366211},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.2978031039237976},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.1509295105934143},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C168007829","wikidata":"https://www.wikidata.org/wiki/Q857299","display_name":"Restriction fragment length polymorphism","level":4,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:ueaeprints.uea.ac.uk:79224","doi":null,"is_oa":true,"landing_page_url":"https://ueaeprints.uea.ac.uk/id/eprint/79224/1/2020CapdevielleSPhD.pdf","pdf_url":"https://ueaeprints.uea.ac.uk/id/eprint/79224/1/2020CapdevielleSPhD.pdf","source":{"id":"https://openalex.org/S4306400384","display_name":"UEA Digital Repository (University of East Anglia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1118541","host_organization_name":"University of East Anglia","host_organization_lineage":["https://openalex.org/I1118541"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis"},{"id":"mag:3132925137","doi":null,"is_oa":false,"landing_page_url":"https://ueaeprints.uea.ac.uk/id/eprint/79224/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:ueaeprints.uea.ac.uk:79224","doi":null,"is_oa":true,"landing_page_url":"https://ueaeprints.uea.ac.uk/id/eprint/79224/1/2020CapdevielleSPhD.pdf","pdf_url":"https://ueaeprints.uea.ac.uk/id/eprint/79224/1/2020CapdevielleSPhD.pdf","source":{"id":"https://openalex.org/S4306400384","display_name":"UEA Digital Repository (University of East Anglia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1118541","host_organization_name":"University of East Anglia","host_organization_lineage":["https://openalex.org/I1118541"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3132925137.pdf","grobid_xml":"https://content.openalex.org/works/W3132925137.grobid-xml"},"referenced_works_count":210,"referenced_works":["https://openalex.org/W15764600","https://openalex.org/W54966170","https://openalex.org/W203986917","https://openalex.org/W270412106","https://openalex.org/W597483763","https://openalex.org/W827601398","https://openalex.org/W1492034352","https://openalex.org/W1507657269","https://openalex.org/W1519266993","https://openalex.org/W1528923286","https://openalex.org/W1532929696","https://openalex.org/W1583384003","https://openalex.org/W1607238965","https://openalex.org/W1607869626","https://openalex.org/W1779083078","https://openalex.org/W1800190270","https://openalex.org/W1800445109","https://openalex.org/W1830072396","https://openalex.org/W1837620133","https://openalex.org/W1917713193","https://openalex.org/W1924227032","https://openalex.org/W1929044522","https://openalex.org/W1948388211","https://openalex.org/W1963536129","https://openalex.org/W1971340120","https://openalex.org/W1976841360","https://openalex.org/W1980755737","https://openalex.org/W1981930263","https://openalex.org/W1982508334","https://openalex.org/W1991857670","https://openalex.org/W1991911453","https://openalex.org/W1992669603","https://openalex.org/W1992976044","https://openalex.org/W1993153247","https://openalex.org/W1998419805","https://openalex.org/W2002659896","https://openalex.org/W2004081408","https://openalex.org/W2005528863","https://openalex.org/W2008003666","https://openalex.org/W2008211173","https://openalex.org/W2015962922","https://openalex.org/W2016722815","https://openalex.org/W2016774108","https://openalex.org/W2017355355","https://openalex.org/W2017512456","https://openalex.org/W2017979514","https://openalex.org/W2018403717","https://openalex.org/W2021142155","https://openalex.org/W2022927779","https://openalex.org/W2027349511","https://openalex.org/W2029835563","https://openalex.org/W2030917962","https://openalex.org/W2033159383","https://openalex.org/W2033653103","https://openalex.org/W2034288965","https://openalex.org/W2035412505","https://openalex.org/W2042570077","https://openalex.org/W2043968267","https://openalex.org/W2045446896","https://openalex.org/W2046338798","https://openalex.org/W2048554065","https://openalex.org/W2049354794","https://openalex.org/W2051344577","https://openalex.org/W2051436329","https://openalex.org/W2052821301","https://openalex.org/W2053096433","https://openalex.org/W2054012543","https://openalex.org/W2054361492","https://openalex.org/W2054479196","https://openalex.org/W2056404047","https://openalex.org/W2056990474","https://openalex.org/W2058727654","https://openalex.org/W2059615241","https://openalex.org/W2059621413","https://openalex.org/W2061926641","https://openalex.org/W2062569473","https://openalex.org/W2062682835","https://openalex.org/W2064108992","https://openalex.org/W2067523320","https://openalex.org/W2069094976","https://openalex.org/W2071166472","https://openalex.org/W2072858425","https://openalex.org/W2073812748","https://openalex.org/W2075336112","https://openalex.org/W2076128088","https://openalex.org/W2077564233","https://openalex.org/W2077580032","https://openalex.org/W2078571849","https://openalex.org/W2084799820","https://openalex.org/W2086393257","https://openalex.org/W2087063281","https://openalex.org/W2090209147","https://openalex.org/W2091383598","https://openalex.org/W2092882875","https://openalex.org/W2095086951","https://openalex.org/W2095891619","https://openalex.org/W2096164568","https://openalex.org/W2096495272","https://openalex.org/W2096718691","https://openalex.org/W2096932204","https://openalex.org/W2098188415","https://openalex.org/W2098225099","https://openalex.org/W2099366525","https://openalex.org/W2099507355","https://openalex.org/W2099763423","https://openalex.org/W2100061185","https://openalex.org/W2100420410","https://openalex.org/W2100680386","https://openalex.org/W2101343618","https://openalex.org/W2103546861","https://openalex.org/W2103586860","https://openalex.org/W2103857455","https://openalex.org/W2107243654","https://openalex.org/W2107803280","https://openalex.org/W2108402289","https://openalex.org/W2110874915","https://openalex.org/W2110899053","https://openalex.org/W2111607030","https://openalex.org/W2112091228","https://openalex.org/W2113761741","https://openalex.org/W2114361753","https://openalex.org/W2114417829","https://openalex.org/W2119440197","https://openalex.org/W2119592887","https://openalex.org/W2120014405","https://openalex.org/W2120080928","https://openalex.org/W2120877946","https://openalex.org/W2121841199","https://openalex.org/W2121887205","https://openalex.org/W2121981718","https://openalex.org/W2122190493","https://openalex.org/W2124397449","https://openalex.org/W2124683522","https://openalex.org/W2125933209","https://openalex.org/W2126622204","https://openalex.org/W2128338141","https://openalex.org/W2128570625","https://openalex.org/W2128629908","https://openalex.org/W2130365546","https://openalex.org/W2131952991","https://openalex.org/W2132434600","https://openalex.org/W2132651667","https://openalex.org/W2134263480","https://openalex.org/W2135123683","https://openalex.org/W2135899145","https://openalex.org/W2136154558","https://openalex.org/W2136487066","https://openalex.org/W2137017469","https://openalex.org/W2141683136","https://openalex.org/W2141759880","https://openalex.org/W2143295722","https://openalex.org/W2143366038","https://openalex.org/W2144526182","https://openalex.org/W2144603960","https://openalex.org/W2145340597","https://openalex.org/W2145816351","https://openalex.org/W2146548872","https://openalex.org/W2146856248","https://openalex.org/W2146996893","https://openalex.org/W2148239117","https://openalex.org/W2148818424","https://openalex.org/W2149542350","https://openalex.org/W2150431323","https://openalex.org/W2150789757","https://openalex.org/W2151492144","https://openalex.org/W2151874688","https://openalex.org/W2153907560","https://openalex.org/W2156449112","https://openalex.org/W2159726324","https://openalex.org/W2161343058","https://openalex.org/W2162151071","https://openalex.org/W2162475509","https://openalex.org/W2162665092","https://openalex.org/W2163581172","https://openalex.org/W2164010802","https://openalex.org/W2164417370","https://openalex.org/W2164945218","https://openalex.org/W2165375801","https://openalex.org/W2165397359","https://openalex.org/W2170402252","https://openalex.org/W2171788269","https://openalex.org/W2181833120","https://openalex.org/W2233625568","https://openalex.org/W2239684698","https://openalex.org/W2251511417","https://openalex.org/W2332039551","https://openalex.org/W2345915093","https://openalex.org/W2408533713","https://openalex.org/W2422138179","https://openalex.org/W2471091106","https://openalex.org/W2491045470","https://openalex.org/W2520644633","https://openalex.org/W2546886975","https://openalex.org/W2567673870","https://openalex.org/W2569009096","https://openalex.org/W2580697086","https://openalex.org/W2594639343","https://openalex.org/W2603490534","https://openalex.org/W2621226126","https://openalex.org/W2740236433","https://openalex.org/W2760056326","https://openalex.org/W2761719638","https://openalex.org/W2769821632","https://openalex.org/W2883494585","https://openalex.org/W2889487365","https://openalex.org/W2889971947","https://openalex.org/W2901514908","https://openalex.org/W2903408122","https://openalex.org/W2913314180","https://openalex.org/W2939081722"],"related_works":["https://openalex.org/W2975311179","https://openalex.org/W2095086951","https://openalex.org/W2889487365","https://openalex.org/W3121040074","https://openalex.org/W4311552177","https://openalex.org/W2051436329","https://openalex.org/W4403449975","https://openalex.org/W4285089712","https://openalex.org/W4414942015","https://openalex.org/W2159726324"],"abstract_inverted_index":{"Phytoplasmas":[0],"are":[1,129],"bacterial":[2],"plant":[3,15,27,48],"pathogens":[4],"vectored":[5],"by":[6],"sap-feeding":[7],"leafhoppers.":[8],"These":[9],"bacteria":[10],"induce":[11],"dramatic":[12],"changes":[13],"in":[14,82,118,182,230,295],"development,":[16],"such":[17,95],"as":[18,96],"witches\u2019":[19,97],"brooms":[20,98],"and":[21,46,57,74,85,99,111,171,237],"secrete":[22],"effectors":[23,243],"that":[24,134,177,248,291],"modulate":[25],"host":[26],"processes.":[28],"Aster":[29],"Yellows":[30],"phytoplasma":[31,142,169,193,246],"strain":[32],"Witches":[33],"Broom":[34],"(AY-WB)":[35],"secretes":[36],"the":[37,64,69,89,105,126,151,155,161,178,192,206,226,231,251,267,296],"effector":[38,114,138,208,289],"Secreted":[39],"AY-WB":[40,245,271],"Protein":[41],"11":[42],"(SAP11),":[43],"which":[44],"binds":[45],"destabilizes":[47],"TCP":[49,127,148,157,214,218,259,275,285],"(TEOSINTE":[50],"BRANCHED1,":[51],"CYCLOIDEA,":[52],"PROLIFERATING":[53],"CELL":[54],"FACTORS":[55],"1":[56,72],"2)":[58],"transcription":[59],"factors,":[60],"particularly":[61],"members":[62,215],"of":[63,68,80,91,107,154,200,244,254,270,281,287],"class":[65,146,221,235,238],"II":[66,109,147,239],"TCPs":[67],"CYCLOIDEA/TEOSINTE":[70],"BRANCHED":[71],"(CYC/TB1)":[73],"CINCINNATA":[75],"(CIN)-TCP":[76],"(sub)classes.":[77,276],"Stable":[78],"production":[79],"SAP11AYWB":[81,255],"A.":[83],"thaliana":[84],"maize":[86],"leads":[87],"to":[88,163,273,284],"induction":[90],"specific":[92],"developmental":[93],"phenotypes,":[94],"altered":[100],"leaf":[101],"shapes,":[102],"consistent":[103],"with":[104,258],"destabilisation":[106],"Class":[108,262],"CYC/TB1":[110],"CIN-TCPs.":[112],"SAP11":[113,137,165,179,187,201,207,227,288],"homologs":[115,139,166,209,290],"were":[116],"found":[117],"other":[119],"phytoplasmas,":[120],"but":[121],"their":[122,173],"binding":[123,232,282],"specificities":[124,233,283],"toward":[125,234],"(sub)classes":[128,286],"unclear.":[130],"This":[131],"thesis":[132],"shows":[133],"four":[135],"divergent":[136,168],"from":[140,167,191,216],"various":[141],"groups":[143,170],"differentially":[144],"bind":[145,213],"(sub)classes,":[149,219,260],"specifically":[150],"helix-loop-helix":[152],"motif":[153],"conserved":[156],"domain.":[158],"I":[159,175,222,224,236,263],"extended":[160],"analysis":[162],"include":[164],"investigated":[172],"phylogeny.":[174],"showed":[176],"proteins":[180],"group":[181],"five":[183],"distinct":[184],"clades.":[185],"The":[186,277],"phylogeny":[188],"is":[189],"different":[190],"16S":[194],"rDNA":[195],"phylogeny,":[196],"suggesting":[197],"horizontal":[198],"exchange":[199],"genes":[202,247],"among":[203],"phytoplasmas.":[204],"Interestingly,":[205],"within":[210],"each":[211],"clade":[212],"three":[217],"including":[220,261],"TCPs.":[223,240],"elucidated":[225],"region":[228],"involved":[229],"Finally,":[241],"SAP":[242],"lie":[249],"on":[250],"genetic":[252],"island":[253],"also":[256],"interact":[257],"TCPs,":[264],"thereby":[265],"expanding":[266],"interaction":[268],"range":[269],"SAPs":[272],"all":[274],"work":[278],"enables":[279],"predictions":[280],"may":[292],"be":[293],"discovered":[294],"future.":[297]},"counts_by_year":[],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2021-03-01T00:00:00"}