{"id":"https://openalex.org/W3132204271","doi":null,"title":"Functional and topological characterization of protein interaction networks","display_name":"Functional and topological characterization of protein interaction networks","publication_year":2004,"publication_date":"2004-03-01","ids":{"openalex":"https://openalex.org/W3132204271","mag":"3132204271"},"language":"en","primary_location":{"id":"pmh:oai:CiteSeerX.psu:10.1.1.130.2848","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.130.2848","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.nd.edu/~alb/Publication06/112 Functional and topological characterization of protein interaction networks/InteractionNetworks_Proteomics 4, 928-942 (2004).pdf","raw_type":"text"},"volume":null,"type":"article","indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015614807","display_name":"Soon\u2010Hyung Yook","orcid":"https://orcid.org/0000-0002-5017-0804","observed_orcids":["https://orcid.org/0000-0002-5017-0804"]},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Soon\u2010Hyung Yook","raw_affiliation_strings":["Department of Physics , University of Notre Dame , Notre Dame , IN , USA"],"raw_orcid":"https://orcid.org/0000-0002-5017-0804","affiliations":[{"raw_affiliation_string":"Department of Physics , University of Notre Dame , Notre Dame , IN , USA","institution_ids":["https://openalex.org/I107639228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088333030","display_name":"Zolt\u00e1n N. Oltvai","orcid":"https://orcid.org/0000-0001-7997-397X","observed_orcids":["https://orcid.org/0000-0001-7997-397X"]},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zolt\u00e1n N. Oltvai","raw_affiliation_strings":["Department of Pathology Northwestern University Chicago IL USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology Northwestern University Chicago IL USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038976962","display_name":"Albert-\u0139aszl\u00f3 Barab\u00e1si","orcid":"https://orcid.org/0000-0002-4028-3522","observed_orcids":["https://orcid.org/0000-0002-4028-3522"]},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Albert\u2010L\u00e1szl\u00f3 Barab\u00e1si","raw_affiliation_strings":["Department of Physics , University of Notre Dame , Notre Dame , IN , USA"],"raw_orcid":"https://orcid.org/0000-0002-4028-3522","affiliations":[{"raw_affiliation_string":"Department of Physics , University of Notre Dame , Notre Dame , IN , USA","institution_ids":["https://openalex.org/I107639228"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.30943541,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2004","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.001500000013038516,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-protein-interaction-network","display_name":"protein-protein interaction network","score":0.9890000224113464},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.9150000214576721},{"id":"https://openalex.org/keywords/network-topology","display_name":"network topology","score":0.6970000267028809},{"id":"https://openalex.org/keywords/scale-free-networks","display_name":"scale-free networks","score":0.984000027179718},{"id":"https://openalex.org/keywords/network-modularity","display_name":"network modularity","score":0.75},{"id":"https://openalex.org/keywords/protein-function","display_name":"protein function","score":0.7350000143051147},{"id":"https://openalex.org/keywords/subcellular-localization","display_name":"subcellular localization","score":0.9900000095367432},{"id":"https://openalex.org/keywords/protein-interaction-databases","display_name":"protein interaction databases","score":0.8149999976158142},{"id":"https://openalex.org/keywords/database-coverage","display_name":"database coverage","score":0.5070000290870667}],"concepts":[{"id":"https://openalex.org/C2779478453","wikidata":"https://www.wikidata.org/wiki/Q6889748","display_name":"Modularity (biology)","level":2,"score":0.790486216545105},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5979217886924744},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.5634084343910217},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5598581433296204},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5356212854385376},{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.5309901833534241},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.523880660533905},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.5002870559692383},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4870505630970001},{"id":"https://openalex.org/C2909613950","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Protein Interaction Networks","level":3,"score":0.460396945476532},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4570782780647278},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.42081016302108765},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.41792741417884827},{"id":"https://openalex.org/C2776879804","wikidata":"https://www.wikidata.org/wiki/Q7630919","display_name":"Subcellular localization","level":3,"score":0.41049572825431824},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3544330596923828},{"id":"https://openalex.org/C2779222958","wikidata":"https://www.wikidata.org/wiki/Q45422","display_name":"Yeast","level":2,"score":0.27971935272216797},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22590422630310059},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17398855090141296},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.11102527379989624},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10447168350219727},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.09135177731513977},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:CiteSeerX.psu:10.1.1.130.2848","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.130.2848","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.nd.edu/~alb/Publication06/112 Functional and topological characterization of protein interaction networks/InteractionNetworks_Proteomics 4, 928-942 (2004).pdf","raw_type":"text"},{"id":"mag:3132204271","doi":null,"is_oa":false,"landing_page_url":"https://ui.adsabs.harvard.edu/abs/2004APS..MARU18001Y/abstract","pdf_url":null,"source":{"id":"https://openalex.org/S4306502661","display_name":"APS March Meeting Abstracts","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"APS March Meeting Abstracts","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W174950548","https://openalex.org/W1486817521","https://openalex.org/W7023619431","https://openalex.org/W1575198443","https://openalex.org/W2123602400","https://openalex.org/W2418314309","https://openalex.org/W4231531355","https://openalex.org/W2148753315","https://openalex.org/W1681574500","https://openalex.org/W7060691538"],"abstract_inverted_index":{"The":[0,134],"elucidation":[1],"of":[2,18,41,57,91,112,128],"the":[3,16,37,42,49,55,58,66,92,102,106,129,139],"cell\u2019s":[4],"large-scale":[5,52],"organization":[6],"is":[7],"a":[8,75,86,156],"primary":[9],"challenge":[10],"for":[11,27,148,158],"post-genomic":[12],"biology,":[13],"and":[14,54,62,88,105,109,151,154],"understanding":[15],"structure":[17,104],"protein":[19,38,93,114,131,141],"interaction":[20,39,132,142,169],"networks":[21,170,173],"offers":[22],"an":[23],"important":[24],"starting":[25],"point":[26],"such":[28],"studies.":[29,164],"We":[30,69,96],"compare":[31],"four":[32,140],"available":[33],"databases":[34,143],"that":[35,82,117],"approximate":[36],"network":[40,67],"yeast,":[43],"Saccharomyces":[44],"cerevisiae,":[45],"aiming":[46],"to":[47],"uncover":[48],"network\u2019s":[50,103],"generic":[51,89],"properties":[53],"impact":[56],"proteins":[59],"\u2019":[60],"function":[61],"cellular":[63],"localization":[64,111,121,152],"on":[65],"topology.":[68],"show":[70],"how":[71],"each":[72],"database":[73],"supports":[74],"scale-free,":[76],"topology":[77],"with":[78],"hierarchical":[79],"modularity,":[80],"indicating":[81],"these":[83],"features":[84],"represent":[85],"robust":[87],"property":[90],"interactions":[94],"network.":[95,133],"also":[97],"find":[98],"strong":[99],"correlations":[100],"between":[101,138],"functional":[107,119,150],"role":[108],"subcellular":[110],"its":[113],"constituents,":[115],"concluding":[116],"most":[118],"and/or":[120],"classes":[122,153],"appear":[123],"as":[124],"relatively":[125],"segregated":[126],"subnetworks":[127],"full":[130],"uncovered":[135],"systematic":[136],"differences":[137],"reflect":[144],"their":[145,159],"relative":[146],"coverage":[147],"different":[149],"provide":[155],"guide":[157],"utility":[160],"in":[161],"various":[162],"bioinformatics":[163],"Keywords:":[165],"Bioinformatics":[166],"/":[167,171],"Protein":[168],"Scale-free":[172],"1":[174]},"counts_by_year":[],"updated_date":"2026-10-28T10:33:24.094632","created_date":"2021-03-01T00:00:00"}
