{"id":"https://openalex.org/W3127047871","doi":"https://doi.org/10.48550/arxiv.2102.03464","title":"DNA Barcodes using a Cylindrical Nanopore","display_name":"DNA Barcodes using a Cylindrical Nanopore","publication_year":2021,"publication_date":"2021-02-06","ids":{"openalex":"https://openalex.org/W3127047871","doi":"https://doi.org/10.48550/arxiv.2102.03464","mag":"3127047871"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2102.03464","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/abs/2102.03464","pdf_url":"https://arxiv.org/pdf/2102.03464","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"volume":null,"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2102.03464","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073844466","display_name":"Swarnadeep Seth","orcid":"https://orcid.org/0000-0001-7271-0704","observed_orcids":["https://orcid.org/0000-0001-7271-0704"]},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Seth, Swarnadeep","raw_affiliation_strings":["Department of Physics , University of Central Florida , Orlando , Florida 32816-2385 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics , University of Central Florida , Orlando , Florida 32816-2385 , USA","institution_ids":["https://openalex.org/I106165777"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049536483","display_name":"Aniket Bhattacharya","orcid":"https://orcid.org/0000-0002-4370-0037","observed_orcids":["https://orcid.org/0000-0002-4370-0037"]},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bhattacharya, Aniket","raw_affiliation_strings":["Department of Physics , University of Central Florida , Orlando , Florida 32816-2385 , USA","University of central florida"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics , University of Central Florida , Orlando , Florida 32816-2385 , USA","institution_ids":["https://openalex.org/I106165777"]},{"raw_affiliation_string":"University of central florida","institution_ids":["https://openalex.org/I106165777"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I106165777"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11582","display_name":"Nanopore and Nanochannel Transport Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11582","display_name":"Nanopore and Nanochannel Transport Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-barcoding","display_name":"DNA barcoding","score":0.9869999885559082},{"id":"https://openalex.org/keywords/cylindrical-nanopores","display_name":"cylindrical nanopores","score":0.7250000238418579},{"id":"https://openalex.org/keywords/protein-tags","display_name":"protein tags","score":0.546999990940094},{"id":"https://openalex.org/keywords/brownian-dynamics","display_name":"Brownian dynamics","score":0.8820000290870667},{"id":"https://openalex.org/keywords/dna-translocation","display_name":"DNA translocation","score":0.5690000057220459}],"concepts":[{"id":"https://openalex.org/C141795571","wikidata":"https://www.wikidata.org/wiki/Q580942","display_name":"Nanopore","level":2,"score":0.746004581451416},{"id":"https://openalex.org/C2776841711","wikidata":"https://www.wikidata.org/wiki/Q856","display_name":"Barcode","level":2,"score":0.7027095556259155},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5764099359512329},{"id":"https://openalex.org/C137800194","wikidata":"https://www.wikidata.org/wiki/Q11713455","display_name":"Interpolation (computer graphics)","level":3,"score":0.5247935056686401},{"id":"https://openalex.org/C112401455","wikidata":"https://www.wikidata.org/wiki/Q178036","display_name":"Brownian motion","level":2,"score":0.504071831703186},{"id":"https://openalex.org/C141732470","wikidata":"https://www.wikidata.org/wiki/Q1154642","display_name":"DNA barcoding","level":2,"score":0.4819190800189972},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.47523239254951477},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.4724982976913452},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4564218521118164},{"id":"https://openalex.org/C2781089630","wikidata":"https://www.wikidata.org/wiki/Q21856745","display_name":"Realization (probability)","level":2,"score":0.4394893944263458},{"id":"https://openalex.org/C130603088","wikidata":"https://www.wikidata.org/wiki/Q4976526","display_name":"Brownian dynamics","level":3,"score":0.4230741262435913},{"id":"https://openalex.org/C151637689","wikidata":"https://www.wikidata.org/wiki/Q5318064","display_name":"Dwell time","level":2,"score":0.42144718766212463},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4045460522174835},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.30828601121902466},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.2710575759410858},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.21665874123573303},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2042243778705597},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20064091682434082},{"id":"https://openalex.org/C104114177","wikidata":"https://www.wikidata.org/wiki/Q79782","display_name":"Motion (physics)","level":2,"score":0.16664189100265503},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1628362238407135},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.12869793176651},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12104395031929016},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.08194759488105774},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C70410870","wikidata":"https://www.wikidata.org/wiki/Q199906","display_name":"Clinical psychology","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:arXiv.org:2102.03464","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/abs/2102.03464","pdf_url":"https://arxiv.org/pdf/2102.03464","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"mag:3127047871","doi":null,"is_oa":true,"landing_page_url":"http://export.arxiv.org/pdf/2102.03464","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.2102.03464","doi":"https://doi.org/10.48550/arxiv.2102.03464","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2102.03464","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2102.03464","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/abs/2102.03464","pdf_url":"https://arxiv.org/pdf/2102.03464","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W2010834748","https://openalex.org/W2012671091","https://openalex.org/W2020828286","https://openalex.org/W2035385028","https://openalex.org/W2037656072","https://openalex.org/W2049003314","https://openalex.org/W2073658284","https://openalex.org/W2074791964","https://openalex.org/W2076263748","https://openalex.org/W2085525886","https://openalex.org/W2099901798","https://openalex.org/W2132323289","https://openalex.org/W2153695569","https://openalex.org/W2492063452","https://openalex.org/W2557322836","https://openalex.org/W2803375804","https://openalex.org/W2896863072","https://openalex.org/W2952115742","https://openalex.org/W2994651393","https://openalex.org/W3036719672","https://openalex.org/W3104285247"],"related_works":["https://openalex.org/W2120793717","https://openalex.org/W2620186124","https://openalex.org/W2922017152","https://openalex.org/W3010026825","https://openalex.org/W2912254201","https://openalex.org/W3135643352","https://openalex.org/W2750584080","https://openalex.org/W2925884416","https://openalex.org/W2908498804","https://openalex.org/W2032145644","https://openalex.org/W2951742112","https://openalex.org/W2008812912","https://openalex.org/W3048491621","https://openalex.org/W2958422022","https://openalex.org/W2799956182","https://openalex.org/W2962701479","https://openalex.org/W3204888059","https://openalex.org/W3199535105","https://openalex.org/W3112356228","https://openalex.org/W3110444244"],"abstract_inverted_index":{"We":[0],"report":[1],"an":[2,75],"accurate":[3],"method":[4],"to":[5,40,99,130],"determine":[6,100],"DNA":[7,20,29,51,114],"barcodes":[8],"from":[9,74],"the":[10,19,38,50,59,66,101,110,113,121],"dwell":[11],"time":[12],"measurement":[13],"of":[14,26,68,79,109,112,123],"protein":[15,47],"tags":[16,48],"(barcodes)":[17],"along":[18,49],"backbone":[21,52],"using":[22,65],"Brownian":[23],"dynamics":[24],"simulation":[25],"a":[27,32,54,91,116],"model":[28],"and":[30,84,127],"use":[31],"recursive":[33],"theoretical":[34,107],"scheme":[35,95],"which":[36],"improves":[37],"measurements":[39],"almost":[41],"100":[42],"%":[43],"accuracy.":[44],"The":[45],"heavier":[46],"introduce":[53,90],"large":[55],"speed":[56],"variation":[57],"in":[58],"chain":[60],"that":[61,96],"can":[62],"be":[63],"understood":[64],"idea":[67],"non-equilibrium":[69],"tension":[70],"propagation":[71],"theory.":[72],"However,":[73],"initial":[76],"rough":[77],"characterization":[78],"velocities":[80,103],"into":[81],"\"fast\"":[82],"(nucleotides)":[83],"\"slow\"":[85],"(protein":[86],"tags)":[87],"domains,":[88],"we":[89],"physically":[92],"motivated":[93],"interpolation":[94],"enables":[97],"us":[98],"barcode":[102],"rather":[104],"accurately.":[105],"Our":[106],"analysis":[108],"motion":[111],"through":[115],"cylindrical":[117],"nanopore":[118],"opens":[119],"up":[120],"possibility":[122],"its":[124],"experimental":[125],"realization":[126],"carries":[128],"over":[129],"multi-nanopore":[131],"devices":[132],"used":[133],"for":[134],"barcoding.":[135]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-09-30T09:27:27.532063","created_date":"2025-10-10T00:00:00"}