{"id":"https://openalex.org/W3127035591","doi":"https://doi.org/10.1088/1674-1056/abc0d6","title":"Statistical potentials for 3D structure evaluation: From proteins to RNAs*","display_name":"Statistical potentials for 3D structure evaluation: From proteins to RNAs*","publication_year":2020,"publication_date":"2020-10-14","ids":{"openalex":"https://openalex.org/W3127035591","doi":"https://doi.org/10.1088/1674-1056/abc0d6","mag":"3127035591"},"language":"en","primary_location":{"id":"doi:10.1088/1674-1056/abc0d6","doi":"https://doi.org/10.1088/1674-1056/abc0d6","is_oa":false,"landing_page_url":"https://doi.org/10.1088/1674-1056/abc0d6","pdf_url":null,"source":{"id":"https://openalex.org/S33442941","display_name":"Chinese Physics B","issn_l":"1674-1056","issn":["1674-1056","2058-3834"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","jufo-1","ki-jl-1","norway-1","poland-40","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320083","host_organization_name":"IOP Publishing","host_organization_lineage":["https://openalex.org/P4310320083","https://openalex.org/P4310311669"],"host_organization_lineage_names":["IOP Publishing","Institute of Physics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Chinese Physics B","raw_type":"journal-article"},"parent_works":[],"lineage":["https://openalex.org/W3127035591"],"child_works_count":0,"type":"article","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043645655","display_name":"Ya-Lan Tan","orcid":"https://orcid.org/0009-0006-6587-3066","observed_orcids":["https://orcid.org/0009-0006-6587-3066"]},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ya-Lan Tan","raw_affiliation_strings":["Department of Physics and Key Laboratory of Artificial Micro & Nano-structures of Education, School of Physics and Technology, Wuhan University, Wuhan 430072, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics and Key Laboratory of Artificial Micro & Nano-structures of Education, School of Physics and Technology, Wuhan University, Wuhan 430072, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068167694","display_name":"Chenjie Feng","orcid":"https://orcid.org/0000-0001-7898-9291","observed_orcids":["https://orcid.org/0000-0001-7898-9291"]},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen-Jie Feng","raw_affiliation_strings":["Department of Physics and Key Laboratory of Artificial Micro & Nano-structures of Education, School of Physics and Technology, Wuhan University, Wuhan 430072, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics and Key Laboratory of Artificial Micro & Nano-structures of Education, School of Physics and Technology, Wuhan University, Wuhan 430072, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000096262","display_name":"Xunxun Wang","orcid":"https://orcid.org/0009-0004-0711-6978","observed_orcids":["https://orcid.org/0009-0004-0711-6978"]},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xunxun Wang","raw_affiliation_strings":["Department of Physics and Key Laboratory of Artificial Micro & Nano-structures of Education, School of Physics and Technology, Wuhan University, Wuhan 430072, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics and Key Laboratory of Artificial Micro & Nano-structures of Education, School of Physics and Technology, Wuhan University, Wuhan 430072, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100686419","display_name":"Wenbing Zhang","orcid":"https://orcid.org/0000-0002-3814-4187","observed_orcids":["https://orcid.org/0000-0002-3814-4187","https://orcid.org/0000-0001-6417-1771"]},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wenbing Zhang","raw_affiliation_strings":["Department of Physics and Key Laboratory of Artificial Micro & Nano-structures of Education, School of Physics and Technology, Wuhan University, Wuhan 430072, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics and Key Laboratory of Artificial Micro & Nano-structures of Education, School of Physics and Technology, Wuhan University, Wuhan 430072, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031309301","display_name":"Zhi-Jie Tan","orcid":"https://orcid.org/0000-0002-7367-0182","observed_orcids":["https://orcid.org/0000-0002-7367-0182"]},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhi-Jie Tan","raw_affiliation_strings":["Department of Physics and Key Laboratory of Artificial Micro & Nano-structures of Education, School of Physics and Technology, Wuhan University, Wuhan 430072, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics and Key Laboratory of Artificial Micro & Nano-structures of Education, School of Physics and Technology, Wuhan University, Wuhan 430072, China","institution_ids":["https://openalex.org/I37461747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5031309301","https://openalex.org/A5043645655","https://openalex.org/A5100686419"],"corresponding_institution_ids":["https://openalex.org/I37461747"],"apc_list":{"value":2500,"currency":"USD","value_usd":2500},"apc_paid":null,"fwci":0.5708,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.56283437,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":97},"biblio":{"volume":"30","issue":"2","first_page":"028705","last_page":"028705"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.548799991607666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.548799991607666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.44339999556541443,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/3002","display_name":"Drug Discovery"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/statistical-potentials","display_name":"statistical potentials","score":0.9909999966621399},{"id":"https://openalex.org/keywords/protein-folding","display_name":"protein folding","score":0.6710000038146973},{"id":"https://openalex.org/keywords/rna-folding","display_name":"RNA folding","score":0.9990000128746033},{"id":"https://openalex.org/keywords/3d-structure-prediction","display_name":"3D structure prediction","score":0.875},{"id":"https://openalex.org/keywords/biological-macromolecules","display_name":"biological macromolecules","score":0.875}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.659048855304718},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.5744267106056213},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5623515844345093},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.507707953453064},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5020301342010498},{"id":"https://openalex.org/C2986587452","wikidata":"https://www.wikidata.org/wiki/Q938438","display_name":"Statistical analysis","level":2,"score":0.4669457674026489},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.44773006439208984},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4183821976184845},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.41412025690078735},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21858009696006775},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13241297006607056},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.07566124200820923},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1088/1674-1056/abc0d6","doi":"https://doi.org/10.1088/1674-1056/abc0d6","is_oa":false,"landing_page_url":"https://doi.org/10.1088/1674-1056/abc0d6","pdf_url":null,"source":{"id":"https://openalex.org/S33442941","display_name":"Chinese Physics B","issn_l":"1674-1056","issn":["1674-1056","2058-3834"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","jufo-1","ki-jl-1","norway-1","poland-40","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320083","host_organization_name":"IOP Publishing","host_organization_lineage":["https://openalex.org/P4310320083","https://openalex.org/P4310311669"],"host_organization_lineage_names":["IOP Publishing","Institute of Physics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Chinese Physics B","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":117,"referenced_works":["https://openalex.org/W1508733551","https://openalex.org/W1524211784","https://openalex.org/W1589812083","https://openalex.org/W1901705328","https://openalex.org/W1920924179","https://openalex.org/W1966329825","https://openalex.org/W1971149989","https://openalex.org/W1974589105","https://openalex.org/W1974885083","https://openalex.org/W1975017420","https://openalex.org/W1975847255","https://openalex.org/W1976961172","https://openalex.org/W1981957011","https://openalex.org/W1986949826","https://openalex.org/W1988409793","https://openalex.org/W1994983243","https://openalex.org/W1995164506","https://openalex.org/W1998994716","https://openalex.org/W1999613945","https://openalex.org/W2001956250","https://openalex.org/W2008505479","https://openalex.org/W2014140912","https://openalex.org/W2019574765","https://openalex.org/W2021239285","https://openalex.org/W2022313666","https://openalex.org/W2027323314","https://openalex.org/W2029817671","https://openalex.org/W2030394302","https://openalex.org/W2031730136","https://openalex.org/W2032913870","https://openalex.org/W2033750697","https://openalex.org/W2035376403","https://openalex.org/W2035999724","https://openalex.org/W2039249260","https://openalex.org/W2045573344","https://openalex.org/W2045642444","https://openalex.org/W2045777307","https://openalex.org/W2049307663","https://openalex.org/W2053150979","https://openalex.org/W2053974580","https://openalex.org/W2054394841","https://openalex.org/W2059099058","https://openalex.org/W2059907401","https://openalex.org/W2074619174","https://openalex.org/W2077064224","https://openalex.org/W2080398714","https://openalex.org/W2082592915","https://openalex.org/W2083364776","https://openalex.org/W2085764610","https://openalex.org/W2087181875","https://openalex.org/W2088608587","https://openalex.org/W2091778154","https://openalex.org/W2097924797","https://openalex.org/W2098312592","https://openalex.org/W2102591917","https://openalex.org/W2103894153","https://openalex.org/W2105527266","https://openalex.org/W2107044164","https://openalex.org/W2108688393","https://openalex.org/W2114714512","https://openalex.org/W2116846654","https://openalex.org/W2117451312","https://openalex.org/W2121104379","https://openalex.org/W2121150070","https://openalex.org/W2122520496","https://openalex.org/W2125677968","https://openalex.org/W2127828823","https://openalex.org/W2130179054","https://openalex.org/W2131097707","https://openalex.org/W2133742529","https://openalex.org/W2134059200","https://openalex.org/W2135300233","https://openalex.org/W2135395577","https://openalex.org/W2137427033","https://openalex.org/W2137736208","https://openalex.org/W2138167486","https://openalex.org/W2140574901","https://openalex.org/W2148645951","https://openalex.org/W2153504150","https://openalex.org/W2157467256","https://openalex.org/W2161776897","https://openalex.org/W2163141523","https://openalex.org/W2167564948","https://openalex.org/W2212215912","https://openalex.org/W2315962322","https://openalex.org/W2341963847","https://openalex.org/W2504005032","https://openalex.org/W2509981950","https://openalex.org/W2544136853","https://openalex.org/W2557714279","https://openalex.org/W2580963738","https://openalex.org/W2585545896","https://openalex.org/W2605792826","https://openalex.org/W2612940361","https://openalex.org/W2740655660","https://openalex.org/W2760839971","https://openalex.org/W2763832915","https://openalex.org/W2790966794","https://openalex.org/W2791622405","https://openalex.org/W2795148109","https://openalex.org/W2799375575","https://openalex.org/W2803205010","https://openalex.org/W2807492508","https://openalex.org/W2888879499","https://openalex.org/W2902320679","https://openalex.org/W2909626341","https://openalex.org/W2937399220","https://openalex.org/W2941002594","https://openalex.org/W2942631801","https://openalex.org/W2964074849","https://openalex.org/W2964711541","https://openalex.org/W2981778178","https://openalex.org/W3024389904","https://openalex.org/W4206463715","https://openalex.org/W4229634009","https://openalex.org/W4229748754","https://openalex.org/W4255916494"],"related_works":["https://openalex.org/W3213615006","https://openalex.org/W4412419605","https://openalex.org/W2937399220","https://openalex.org/W2795148109","https://openalex.org/W4205392704","https://openalex.org/W4323076291","https://openalex.org/W7150850614","https://openalex.org/W2068846969","https://openalex.org/W4280593620","https://openalex.org/W2027511257"],"abstract_inverted_index":{"Structure":[0],"evaluation":[1,20],"is":[2],"critical":[3],"to":[4,39],"in":[5,44,79,128],"silico":[6],"3-dimensional":[7],"structure":[8,19,46,70,81,100,113],"predictions":[9],"for":[10,68,98,111,126],"biomacromolecules":[11],"such":[12],"as":[13],"proteins":[14],"and":[15,33,42,48,61],"RNAs.":[16],"For":[17],"proteins,":[18],"has":[21,57],"been":[22,37,66],"paid":[23],"attention":[24,60],"over":[25],"three":[26],"decades":[27],"along":[28],"with":[29,73],"protein":[30,45,80,99],"folding":[31,55],"problem,":[32],"statistical":[34,63,96,109,124],"potentials":[35,64,97,110,125],"have":[36,65],"shown":[38],"be":[40],"effective":[41],"efficient":[43],"prediction":[47],"evaluation.":[49,101,114],"In":[50,83],"recent":[51],"two":[52],"decades,":[53],"RNA":[54,69,112],"problem":[56],"attracted":[58],"much":[59],"several":[62],"developed":[67,108],"evaluation,":[71],"partially":[72],"the":[74,77,94,106,119,129],"aid":[75],"of":[76],"progress":[78],"prediction.":[82],"this":[84],"review,":[85],"we":[86,103,116],"will":[87,104,117],"firstly":[88],"give":[89],"a":[90],"brief":[91],"overview":[92],"on":[93,121],"existing":[95],"Afterwards,":[102],"introduce":[105],"recently":[107],"Finally,":[115],"emphasize":[118],"perspective":[120],"developing":[122],"new":[123],"RNAs":[127],"near":[130],"future.":[131]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1}],"updated_date":"2026-10-16T09:59:22.235173","created_date":"2021-02-15T00:00:00"}