{"id":"https://openalex.org/W3107849941","doi":"https://doi.org/10.1101/2020.11.24.396358","title":"Transcriptome analysis of an albino mutant in Haworthia cooperi var. pilifera","display_name":"Transcriptome analysis of an albino mutant in Haworthia cooperi var. pilifera","publication_year":2020,"publication_date":"2020-11-24","ids":{"openalex":"https://openalex.org/W3107849941","doi":"https://doi.org/10.1101/2020.11.24.396358","mag":"3107849941"},"language":"en","primary_location":{"id":"doi:10.1101/2020.11.24.396358","doi":"https://doi.org/10.1101/2020.11.24.396358","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2020.11.24.396358","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2020/11/24/2020.11.24.396358.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"parent_works":[],"lineage":["https://openalex.org/W3107849941"],"child_works_count":0,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2020/11/24/2020.11.24.396358.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069904367","display_name":"Maofei Ren","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I38756568","display_name":"Xinyang Agriculture and Forestry University","ror":"https://ror.org/017t6fa07","country_code":"CN","type":"education","lineage":["https://openalex.org/I38756568"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Maofei Ren","raw_affiliation_strings":["College of Horticulture, Xinyang Agricultural and Forestry University, Xinyang, Henan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Horticulture, Xinyang Agricultural and Forestry University, Xinyang, Henan, China","institution_ids":["https://openalex.org/I38756568"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100456180","display_name":"Yan Zhang","orcid":"https://orcid.org/0000-0001-9914-1302","observed_orcids":["https://orcid.org/0000-0001-9914-1302"]},"institutions":[{"id":"https://openalex.org/I38756568","display_name":"Xinyang Agriculture and Forestry University","ror":"https://ror.org/017t6fa07","country_code":"CN","type":"education","lineage":["https://openalex.org/I38756568"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Zhang","raw_affiliation_strings":["College of Horticulture, Xinyang Agricultural and Forestry University, Xinyang, Henan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Horticulture, Xinyang Agricultural and Forestry University, Xinyang, Henan, China","institution_ids":["https://openalex.org/I38756568"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101077352","display_name":"Hanbing Xu","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I38756568","display_name":"Xinyang Agriculture and Forestry University","ror":"https://ror.org/017t6fa07","country_code":"CN","type":"education","lineage":["https://openalex.org/I38756568"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hanbing Xu","raw_affiliation_strings":["College of Horticulture, Xinyang Agricultural and Forestry University, Xinyang, Henan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Horticulture, Xinyang Agricultural and Forestry University, Xinyang, Henan, China","institution_ids":["https://openalex.org/I38756568"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100526138","display_name":"Qingsong Zhu","orcid":"https://orcid.org/0009-0007-6432-1558","observed_orcids":["https://orcid.org/0009-0007-6432-1558"]},"institutions":[{"id":"https://openalex.org/I38756568","display_name":"Xinyang Agriculture and Forestry University","ror":"https://ror.org/017t6fa07","country_code":"CN","type":"education","lineage":["https://openalex.org/I38756568"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qingsong Zhu","raw_affiliation_strings":["College of Horticulture, Xinyang Agricultural and Forestry University, Xinyang, Henan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Horticulture, Xinyang Agricultural and Forestry University, Xinyang, Henan, China","institution_ids":["https://openalex.org/I38756568"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Zhiyong Wang","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I38756568","display_name":"Xinyang Agriculture and Forestry University","ror":"https://ror.org/017t6fa07","country_code":"CN","type":"education","lineage":["https://openalex.org/I38756568"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiyong Wang","raw_affiliation_strings":["College of Horticulture, Xinyang Agricultural and Forestry University, Xinyang, Henan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Horticulture, Xinyang Agricultural and Forestry University, Xinyang, Henan, China","institution_ids":["https://openalex.org/I38756568"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027585357","display_name":"Songhu Liu","orcid":"https://orcid.org/0009-0008-0027-8287","observed_orcids":["https://orcid.org/0009-0008-0027-8287"]},"institutions":[{"id":"https://openalex.org/I38756568","display_name":"Xinyang Agriculture and Forestry University","ror":"https://ror.org/017t6fa07","country_code":"CN","type":"education","lineage":["https://openalex.org/I38756568"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Songhu Liu","raw_affiliation_strings":["College of Horticulture, Xinyang Agricultural and Forestry University, Xinyang, Henan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Horticulture, Xinyang Agricultural and Forestry University, Xinyang, Henan, China","institution_ids":["https://openalex.org/I38756568"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113156936","display_name":"Peiling Li","orcid":"https://orcid.org/0000-0003-2040-4136","observed_orcids":["https://orcid.org/0000-0003-2040-4136"]},"institutions":[{"id":"https://openalex.org/I38756568","display_name":"Xinyang Agriculture and Forestry University","ror":"https://ror.org/017t6fa07","country_code":"CN","type":"education","lineage":["https://openalex.org/I38756568"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Peiling Li","raw_affiliation_strings":["College of Horticulture, Xinyang Agricultural and Forestry University, Xinyang, Henan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Horticulture, Xinyang Agricultural and Forestry University, Xinyang, Henan, China","institution_ids":["https://openalex.org/I38756568"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074139538","display_name":"Benguo Liang","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I38756568","display_name":"Xinyang Agriculture and Forestry University","ror":"https://ror.org/017t6fa07","country_code":"CN","type":"education","lineage":["https://openalex.org/I38756568"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Benguo Liang","raw_affiliation_strings":["College of Horticulture, Xinyang Agricultural and Forestry University, Xinyang, Henan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Horticulture, Xinyang Agricultural and Forestry University, Xinyang, Henan, China","institution_ids":["https://openalex.org/I38756568"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5074139538","https://openalex.org/A5113156936"],"corresponding_institution_ids":["https://openalex.org/I38756568"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11237","display_name":"Plant Gene Expression Analysis","score":0.9628999829292297,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11237","display_name":"Plant Gene Expression Analysis","score":0.9628999829292297,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.009100000374019146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/albino-mutants","display_name":"albino mutants","score":0.9940000176429749},{"id":"https://openalex.org/keywords/chlorophyll-biosynthesis","display_name":"chlorophyll biosynthesis","score":0.984000027179718},{"id":"https://openalex.org/keywords/chloroplast-division","display_name":"chloroplast division","score":0.7749999761581421},{"id":"https://openalex.org/keywords/carotenoid-biosynthesis","display_name":"carotenoid biosynthesis","score":0.859000027179718},{"id":"https://openalex.org/keywords/anthocyanin-biosynthesis","display_name":"anthocyanin biosynthesis","score":0.9929999709129333},{"id":"https://openalex.org/keywords/differentially-expressed-genes","display_name":"differentially expressed genes","score":0.8880000114440918},{"id":"https://openalex.org/keywords/succulents","display_name":"succulent plants","score":0.9079999923706055},{"id":"https://openalex.org/keywords/leaf-pigmentation","display_name":"leaf pigmentation","score":0.6759999990463257},{"id":"https://openalex.org/keywords/transcription-factors","display_name":"transcription factors","score":0.6190000176429749}],"concepts":[{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.7702993154525757},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.7597600221633911},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7295098304748535},{"id":"https://openalex.org/C69305403","wikidata":"https://www.wikidata.org/wiki/Q47263","display_name":"Chloroplast","level":3,"score":0.6589573621749878},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6378848552703857},{"id":"https://openalex.org/C183688256","wikidata":"https://www.wikidata.org/wiki/Q11982","display_name":"Photosynthesis","level":2,"score":0.5770336389541626},{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.5613207221031189},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.5394253730773926},{"id":"https://openalex.org/C2776373379","wikidata":"https://www.wikidata.org/wiki/Q43177","display_name":"Chlorophyll","level":2,"score":0.532015323638916},{"id":"https://openalex.org/C28781525","wikidata":"https://www.wikidata.org/wiki/Q191907","display_name":"Carotenoid","level":2,"score":0.5091063380241394},{"id":"https://openalex.org/C79877727","wikidata":"https://www.wikidata.org/wiki/Q24786020","display_name":"WRKY protein domain","level":5,"score":0.4739950895309448},{"id":"https://openalex.org/C2780004758","wikidata":"https://www.wikidata.org/wiki/Q5458172","display_name":"Flavonoid biosynthesis","level":5,"score":0.4215034544467926},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3387640118598938},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.25026679039001465}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1101/2020.11.24.396358","doi":"https://doi.org/10.1101/2020.11.24.396358","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2020.11.24.396358","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2020/11/24/2020.11.24.396358.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.1101/2020.11.24.396358","doi":"https://doi.org/10.1101/2020.11.24.396358","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2020.11.24.396358","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2020/11/24/2020.11.24.396358.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1901159603","display_name":null,"funder_award_id":"32002083","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3013808865","display_name":null,"funder_award_id":"172102110151","funder_id":"https://openalex.org/F4320336593","funder_display_name":"Henan Provincial Science and Technology Research Project"},{"id":"https://openalex.org/G6174442658","display_name":null,"funder_award_id":"172102110263","funder_id":"https://openalex.org/F4320336593","funder_display_name":"Henan Provincial Science and Technology Research Project"},{"id":"https://openalex.org/G6851499437","display_name":null,"funder_award_id":"172102110248","funder_id":"https://openalex.org/F4320336593","funder_display_name":"Henan Provincial Science and Technology Research Project"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320336593","display_name":"Henan Provincial Science and Technology Research Project","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3107849941.pdf","grobid_xml":"https://content.openalex.org/works/W3107849941.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1131359758","https://openalex.org/W1497594722","https://openalex.org/W1521751079","https://openalex.org/W1968827563","https://openalex.org/W1979647093","https://openalex.org/W1982981899","https://openalex.org/W1995678144","https://openalex.org/W1999021108","https://openalex.org/W2009728796","https://openalex.org/W2026450357","https://openalex.org/W2030295215","https://openalex.org/W2040096218","https://openalex.org/W2064209558","https://openalex.org/W2073973088","https://openalex.org/W2085815047","https://openalex.org/W2092023617","https://openalex.org/W2109143546","https://openalex.org/W2134738614","https://openalex.org/W2135625177","https://openalex.org/W2146722678","https://openalex.org/W2149258924","https://openalex.org/W2150630769","https://openalex.org/W2153900044","https://openalex.org/W2157123874","https://openalex.org/W2158776643","https://openalex.org/W2159839606","https://openalex.org/W2243189409","https://openalex.org/W2338169850","https://openalex.org/W2466638848","https://openalex.org/W2770190824","https://openalex.org/W2913963164"],"related_works":["https://openalex.org/W4396890956","https://openalex.org/W2802042274","https://openalex.org/W4389995525","https://openalex.org/W4306949331","https://openalex.org/W4394874196","https://openalex.org/W4417316739","https://openalex.org/W3114924668","https://openalex.org/W4295066757","https://openalex.org/W3009934402","https://openalex.org/W4285587570"],"abstract_inverted_index":{"ABSTRACT":[0],"Photosynthetic":[1],"organisms":[2],"appear":[3],"green":[4],"due":[5],"to":[6,23,102],"the":[7,17,56,76,145,155,178],"accumulation":[8],"of":[9,59,68,114,157],"chlorophyll":[10],"(Chl)":[11],"pigments":[12],"in":[13,30,48,63,106,132,195],"their":[14],"chloroplasts.":[15],"Although":[16],"genes":[18,79,94,149],"encoding":[19],"key":[20],"enzymes":[21],"related":[22],"Chl":[24],"biosynthesis":[25,156],"have":[26,42],"been":[27,45],"well":[28,166],"characterized":[29],"herbaceous":[31],"plants,":[32],"such":[33],"as":[34,165,167],"rice,":[35],"Arabidopsis":[36],"and":[37,83,97,119,139,154,163,185],"maize,":[38],"white":[39],"leaf":[40,60,183,193],"mutants":[41],"not":[43],"yet":[44],"fully":[46],"studied":[47],"succulent":[49,196],"plants.":[50,197],"In":[51],"this":[52],"work,":[53],"we":[54],"explored":[55],"molecular":[57,141,179],"mechanism":[58],"color":[61],"formation":[62],"an":[64],"albino":[65],"mutant":[66],"(HUA)":[67],"Haworthia":[69],"cooperi":[70],"var.":[71],"pilifera":[72],".":[73],"We":[74],"investigated":[75],"differentially":[77,104],"expressed":[78,105],"(DEGs)":[80],"between":[81],"HUA":[82,107],"control":[84],"plants":[85],"(wild":[86],"type,":[87],"LV)":[88],"by":[89],"transcriptome":[90],"sequencing.":[91],"Approximately":[92],"2,586":[93],"(1,996":[95],"downregulated":[96],"590":[98],"upregulated)":[99],"were":[100,147],"found":[101],"be":[103],"compared":[108],"with":[109,151],"LV":[110],"using":[111],"a":[112,187],"threshold":[113],"ratio":[115],"change":[116],"\u2265":[117],"2":[118],"false":[120],"discovery":[121],"rate":[122],"(FDR)":[123],"\u22640.05.":[124],"GO":[125],"analysis":[126],"predicted":[127],"that":[128],"these":[129,173],"DEGs":[130,146],"participate":[131],"12":[133],"cellular":[134],"component,":[135],"20":[136],"biological":[137],"process":[138],"13":[140],"function":[142],"terms.":[143],"Among":[144],"well-recognized":[148],"associated":[150],"chloroplast":[152],"division":[153],"plant":[158],"pigments,":[159],"including":[160],"chlorophyll,":[161],"carotenoids":[162],"anthocyanin,":[164],"various":[168],"transcription":[169],"factor":[170],"families.":[171],"Overall,":[172],"results":[174],"can":[175],"help":[176],"confirm":[177],"regulatory":[180],"mechanisms":[181],"controlling":[182],"pigmentation":[184],"provide":[186],"comprehensive":[188],"resource":[189],"for":[190],"breeding":[191],"colorful":[192],"phenotypes":[194]},"counts_by_year":[],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2020-12-07T00:00:00"}
