{"id":"https://openalex.org/W3098733214","doi":"https://doi.org/10.1063/5.0025200","title":"Extensions of the worm-like-chain model to tethered active filaments under tension","display_name":"Extensions of the worm-like-chain model to tethered active filaments under tension","publication_year":2020,"publication_date":"2020-11-17","ids":{"openalex":"https://openalex.org/W3098733214","doi":"https://doi.org/10.1063/5.0025200","mag":"3098733214","pmid":"https://pubmed.ncbi.nlm.nih.gov/33218239"},"language":"en","primary_location":{"id":"doi:10.1063/5.0025200","doi":"https://doi.org/10.1063/5.0025200","is_oa":false,"landing_page_url":"https://doi.org/10.1063/5.0025200","pdf_url":null,"source":{"id":"https://openalex.org/S77047749","display_name":"The Journal of Chemical Physics","issn_l":"0021-9606","issn":["0021-9606","1089-7690","1520-9032"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-b","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320257","host_organization_name":"American Institute of Physics","host_organization_lineage":["https://openalex.org/P4310320257"],"host_organization_lineage_names":["American Institute of Physics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Chemical Physics","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2020/07/26/2020.07.26.222273.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101761091","display_name":"Xinyu Liao","orcid":"https://orcid.org/0000-0002-8530-7997","observed_orcids":["https://orcid.org/0000-0002-8530-7997"]},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xinyu Liao","raw_affiliation_strings":["Graduate Group in Applied Mathematics and Computational Science, University of Pennsylvania 1 , Philadelphia, Pennsylvania 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Group in Applied Mathematics and Computational Science, University of Pennsylvania 1 , Philadelphia, Pennsylvania 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044032256","display_name":"Prashant K. Purohit","orcid":"https://orcid.org/0000-0002-1939-907X","observed_orcids":["https://orcid.org/0000-0002-1939-907X"]},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Prashant K. Purohit","raw_affiliation_strings":["Department of Mechanical Engineering and Applied Mechanics, University of Pennsylvania 2 , Philadelphia, Pennsylvania 19104, USA","Graduate Group in Applied Mathematics and Computational Science, University of Pennsylvania 1 , Philadelphia, Pennsylvania 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering and Applied Mechanics, University of Pennsylvania 2 , Philadelphia, Pennsylvania 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Graduate Group in Applied Mathematics and Computational Science, University of Pennsylvania 1 , Philadelphia, Pennsylvania 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007809664","display_name":"Arvind Gopinath","orcid":"https://orcid.org/0000-0002-7824-3163","observed_orcids":["https://orcid.org/0000-0002-7824-3163"]},"institutions":[{"id":"https://openalex.org/I156087764","display_name":"University of California, Merced","ror":"https://ror.org/00d9ah105","country_code":"US","type":"education","lineage":["https://openalex.org/I156087764"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Arvind Gopinath","raw_affiliation_strings":["Department of Bioengineering, University of California Merced 3 , Merced, California 95343, USA"],"raw_orcid":"https://orcid.org/0000-0002-7824-3163","affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of California Merced 3 , Merced, California 95343, USA","institution_ids":["https://openalex.org/I156087764"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5007809664"],"corresponding_institution_ids":["https://openalex.org/I156087764"],"apc_list":{"value":3500,"currency":"USD","value_usd":3500},"apc_paid":null,"fwci":0.6235,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.63654114,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"153","issue":"19","first_page":"194901","last_page":"194901"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11520","display_name":"Advanced Thermodynamics and Statistical Mechanics","score":0.17350000143051147,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11520","display_name":"Advanced Thermodynamics and Statistical Mechanics","score":0.17350000143051147,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11486","display_name":"Micro and Nano Robotics","score":0.1720999926328659,"subfield":{"id":"https://openalex.org/subfields/3104","display_name":"Condensed Matter Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10379","display_name":"Cellular Mechanics and Interactions","score":0.16609999537467957,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/worm-like-chain-model","display_name":"worm-like chain model","score":0.9850000143051147},{"id":"https://openalex.org/keywords/active-filaments","display_name":"active filaments","score":0.9290000200271606},{"id":"https://openalex.org/keywords/microtubules","display_name":"microtubules","score":0.7229999899864197},{"id":"https://openalex.org/keywords/active-noise","display_name":"active noise","score":0.6499999761581421},{"id":"https://openalex.org/keywords/brownian-noise","display_name":"Brownian noise","score":0.6840000152587891},{"id":"https://openalex.org/keywords/hinged-boundary-conditions","display_name":"hinged boundary conditions","score":0.8259999752044678},{"id":"https://openalex.org/keywords/clamped-boundary-conditions","display_name":"clamped boundary conditions","score":0.996999979019165},{"id":"https://openalex.org/keywords/effective-temperature","display_name":"effective temperature","score":0.9129999876022339},{"id":"https://openalex.org/keywords/molecular-motors","display_name":"molecular motors","score":0.7639999985694885},{"id":"https://openalex.org/keywords/filament-bending","display_name":"filament bending","score":0.45100000500679016},{"id":"https://openalex.org/keywords/bacterial-suspensions","display_name":"bacterial suspensions","score":0.531000018119812},{"id":"https://openalex.org/keywords/optical-trapping","display_name":"optical trapping","score":0.39100000262260437}],"concepts":[{"id":"https://openalex.org/C199185054","wikidata":"https://www.wikidata.org/wiki/Q552299","display_name":"Chain (unit)","level":2,"score":0.5555225610733032},{"id":"https://openalex.org/C186068551","wikidata":"https://www.wikidata.org/wiki/Q13255585","display_name":"Tension (geology)","level":3,"score":0.5481874346733093},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3359780013561249},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.28391867876052856},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1733536422252655},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.12006661295890808},{"id":"https://openalex.org/C180016635","wikidata":"https://www.wikidata.org/wiki/Q2712821","display_name":"Compression (physics)","level":2,"score":0.060660213232040405},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1063/5.0025200","doi":"https://doi.org/10.1063/5.0025200","is_oa":false,"landing_page_url":"https://doi.org/10.1063/5.0025200","pdf_url":null,"source":{"id":"https://openalex.org/S77047749","display_name":"The Journal of Chemical Physics","issn_l":"0021-9606","issn":["0021-9606","1089-7690","1520-9032"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-b","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320257","host_organization_name":"American Institute of Physics","host_organization_lineage":["https://openalex.org/P4310320257"],"host_organization_lineage_names":["American Institute of Physics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Chemical Physics","raw_type":"journal-article"},{"id":"doi:10.1101/2020.07.26.222273","doi":"https://doi.org/10.1101/2020.07.26.222273","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2020.07.26.222273","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2020/07/26/2020.07.26.222273.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmid:33218239","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33218239","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of chemical physics","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1101/2020.07.26.222273","doi":"https://doi.org/10.1101/2020.07.26.222273","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2020.07.26.222273","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2020/07/26/2020.07.26.222273.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G3473162306","display_name":"Collaborative Research: Bacteria surface sensing and biofilm development","funder_award_id":"2026782","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7725756030","display_name":"Allosteric Interactions between Proteins on DNA and Membranes","funder_award_id":"1662101","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337391","display_name":"Division of Civil, Mechanical and Manufacturing Innovation","ror":"https://ror.org/028yd4c30"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3098733214.pdf","grobid_xml":"https://content.openalex.org/works/W3098733214.grobid-xml"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W256186956","https://openalex.org/W1566657275","https://openalex.org/W1904457290","https://openalex.org/W1905481354","https://openalex.org/W1977199730","https://openalex.org/W1983564710","https://openalex.org/W1984242907","https://openalex.org/W1984899518","https://openalex.org/W1998276013","https://openalex.org/W2000544502","https://openalex.org/W2001815952","https://openalex.org/W2012507357","https://openalex.org/W2017681545","https://openalex.org/W2018058679","https://openalex.org/W2021311307","https://openalex.org/W2024316435","https://openalex.org/W2025562104","https://openalex.org/W2033287390","https://openalex.org/W2033896815","https://openalex.org/W2036312030","https://openalex.org/W2036475903","https://openalex.org/W2038729819","https://openalex.org/W2043163044","https://openalex.org/W2046496096","https://openalex.org/W2051934627","https://openalex.org/W2055566196","https://openalex.org/W2056707942","https://openalex.org/W2057481361","https://openalex.org/W2065781004","https://openalex.org/W2070840130","https://openalex.org/W2071614260","https://openalex.org/W2078598084","https://openalex.org/W2096633192","https://openalex.org/W2097293881","https://openalex.org/W2143514054","https://openalex.org/W2149374899","https://openalex.org/W2153200104","https://openalex.org/W2158708699","https://openalex.org/W2167440571","https://openalex.org/W2172158733","https://openalex.org/W2190411095","https://openalex.org/W2257177773","https://openalex.org/W2264553899","https://openalex.org/W2320560325","https://openalex.org/W2499719923","https://openalex.org/W2517162880","https://openalex.org/W2606469084","https://openalex.org/W2752648437","https://openalex.org/W2757967554","https://openalex.org/W2784092037","https://openalex.org/W2804710844","https://openalex.org/W2952386284","https://openalex.org/W2957534454","https://openalex.org/W2986086925","https://openalex.org/W3010198379","https://openalex.org/W3016296470","https://openalex.org/W3033948075","https://openalex.org/W3045014512","https://openalex.org/W3082879071","https://openalex.org/W3104006573"],"related_works":["https://openalex.org/W3183081970","https://openalex.org/W7161624875","https://openalex.org/W2146224486","https://openalex.org/W2015361831","https://openalex.org/W2138298130","https://openalex.org/W2887391569","https://openalex.org/W2104606366","https://openalex.org/W1833874784","https://openalex.org/W4408551007","https://openalex.org/W2970700231"],"abstract_inverted_index":{"Intracellular":[0],"elastic":[1],"filaments":[2,52,82,130,187],"such":[3,31,79],"as":[4,32,40],"microtubules":[5],"are":[6,95,146],"subject":[7],"to":[8,175],"thermal":[9],"Brownian":[10,104],"noise":[11,14],"and":[12,35,56,106,113,121,137,152,157,167],"active":[13,81],"generated":[15],"by":[16,88,163,168,179],"molecular":[17],"motors":[18],"that":[19],"convert":[20],"chemical":[21],"energy":[22],"into":[23],"mechanical":[24,54,76],"work.":[25],"Similarly,":[26],"polymers":[27],"in":[28,91],"living":[29],"fluids":[30],"bacterial":[33],"suspensions":[34],"swarms":[36],"suffer":[37],"bending":[38,155],"deformations":[39],"they":[41],"interact":[42,57],"with":[43,47,58,110],"single":[44,206],"bacteria":[45],"or":[46,64,188,204],"cell":[48],"clusters.":[49],"Often,":[50],"these":[51],"perform":[53],"functions":[55],"their":[59,189],"networked":[60],"environment":[61],"through":[62],"cross-links":[63],"have":[65],"other":[66,205],"similar":[67],"constraints":[68],"placed":[69],"on":[70],"them.":[71],"Here,":[72],"we":[73],"examine":[74],"the":[75,92,124,149,164,169,177,182,186],"properties-under":[77],"tension-of":[78],"constrained":[80],"under":[83,131],"canonical":[84],"boundary":[85,133,144],"conditions":[86,134,145],"motivated":[87],"experiments.":[89],"Fluctuations":[90],"filament":[93],"shape":[94],"a":[96],"consequence":[97],"of":[98,101,148,181,185],"two":[99],"types":[100],"random":[102],"forces-thermal":[103],"forces":[105,109],"activity":[107,178],"derived":[108],"specified":[111],"time":[112],"space":[114],"correlation":[115],"functions.":[116],"We":[117],"derive":[118],"force-extension":[119,183],"relationships":[120],"expressions":[122,141],"for":[123,128,142],"mean":[125,190],"square":[126,191],"deflections":[127],"tethered":[129,201],"various":[132],"including":[135],"hinged":[136],"clamped":[138],"constraints.":[139],"The":[140],"hinged-hinged":[143],"reminiscent":[147],"worm-like-chain":[150],"model":[151],"feature":[153],"effective":[154,160],"moduli":[156],"mode-dependent":[158],"non-thermodynamic":[159],"temperatures":[161],"controlled":[162],"imposed":[165],"force":[166],"activity.":[170],"Our":[171],"results":[172],"provide":[173],"methods":[174],"estimate":[176],"measurements":[180],"relation":[184],"deflections,":[192],"which":[193],"can":[194],"be":[195],"routinely":[196],"performed":[197],"using":[198],"optical":[199],"traps,":[200],"particle":[202],"experiments,":[203],"molecule":[207],"techniques.":[208]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1}],"updated_date":"2026-11-03T10:50:19.383937","created_date":"2020-11-23T00:00:00"}