{"id":"https://openalex.org/W3098458366","doi":"https://doi.org/10.3390/v12111283","title":"The Molecular Epidemiology and Transmission Dynamics of HIV Type 1 in a General Population Cohort in Uganda","display_name":"The Molecular Epidemiology and Transmission Dynamics of HIV Type 1 in a General Population Cohort in Uganda","publication_year":2020,"publication_date":"2020-11-10","ids":{"openalex":"https://openalex.org/W3098458366","doi":"https://doi.org/10.3390/v12111283","mag":"3098458366","pmid":"https://pubmed.ncbi.nlm.nih.gov/33182587","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/7697205"},"language":"en","primary_location":{"id":"doi:10.3390/v12111283","doi":"https://doi.org/10.3390/v12111283","is_oa":true,"landing_page_url":"https://doi.org/10.3390/v12111283","pdf_url":"https://www.mdpi.com/1999-4915/12/11/1283/pdf","source":{"id":"https://openalex.org/S55776271","display_name":"Viruses","issn_l":"1999-4915","issn":["1999-4915"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","medline","norway-1","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Viruses","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1999-4915/12/11/1283/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071331157","display_name":"Deogratius Ssemwanga","orcid":"https://orcid.org/0000-0001-9675-4234","observed_orcids":["https://orcid.org/0000-0001-9675-4234"]},"institutions":[{"id":"https://openalex.org/I4210089966","display_name":"London School of Hygiene & Tropical Medicine","ror":"https://ror.org/00a0jsq62","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210089966"]},{"id":"https://openalex.org/I4405277452","display_name":"MRC/UVRI & LSHTM Uganda Research Unit","ror":"https://ror.org/02qzk8434","country_code":"UG","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210087105","https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I90344618","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I91369620","display_name":"Uganda Virus Research Institute","ror":"https://ror.org/04509n826","country_code":"UG","type":"facility","lineage":["https://openalex.org/I91369620"]}],"countries":["GB","UG"],"is_corresponding":true,"raw_author_name":"Deogratius Ssemwanga","raw_affiliation_strings":["Department of General Virology, Uganda Virus Research Institute, Entebbe 256, Uganda","Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda"],"raw_orcid":"https://orcid.org/0000-0001-9675-4234","affiliations":[{"raw_affiliation_string":"Department of General Virology, Uganda Virus Research Institute, Entebbe 256, Uganda","institution_ids":["https://openalex.org/I91369620"]},{"raw_affiliation_string":"Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda","institution_ids":["https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618","https://openalex.org/I91369620"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052472077","display_name":"Nicholas Bbosa","orcid":"https://orcid.org/0000-0003-1280-675X","observed_orcids":["https://orcid.org/0000-0003-1280-675X"]},"institutions":[{"id":"https://openalex.org/I4210089966","display_name":"London School of Hygiene & Tropical Medicine","ror":"https://ror.org/00a0jsq62","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210089966"]},{"id":"https://openalex.org/I4405277452","display_name":"MRC/UVRI & LSHTM Uganda Research Unit","ror":"https://ror.org/02qzk8434","country_code":"UG","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210087105","https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I90344618","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I91369620","display_name":"Uganda Virus Research Institute","ror":"https://ror.org/04509n826","country_code":"UG","type":"facility","lineage":["https://openalex.org/I91369620"]}],"countries":["GB","UG"],"is_corresponding":false,"raw_author_name":"Nicholas Bbosa","raw_affiliation_strings":["Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda"],"raw_orcid":"https://orcid.org/0000-0003-1280-675X","affiliations":[{"raw_affiliation_string":"Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda","institution_ids":["https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618","https://openalex.org/I91369620"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034483772","display_name":"Rebecca Namugabwe Nsubuga","orcid":"https://orcid.org/0000-0001-8527-6222","observed_orcids":["https://orcid.org/0000-0001-8527-6222"]},"institutions":[{"id":"https://openalex.org/I4210089966","display_name":"London School of Hygiene & Tropical Medicine","ror":"https://ror.org/00a0jsq62","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210089966"]},{"id":"https://openalex.org/I4405277452","display_name":"MRC/UVRI & LSHTM Uganda Research Unit","ror":"https://ror.org/02qzk8434","country_code":"UG","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210087105","https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I90344618","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I91369620","display_name":"Uganda Virus Research Institute","ror":"https://ror.org/04509n826","country_code":"UG","type":"facility","lineage":["https://openalex.org/I91369620"]}],"countries":["GB","UG"],"is_corresponding":false,"raw_author_name":"Rebecca N. Nsubuga","raw_affiliation_strings":["Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda"],"raw_orcid":"https://orcid.org/0000-0001-8527-6222","affiliations":[{"raw_affiliation_string":"Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda","institution_ids":["https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618","https://openalex.org/I91369620"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002324780","display_name":"Alfred Ssekagiri","orcid":"https://orcid.org/0000-0002-6549-3550","observed_orcids":["https://orcid.org/0000-0002-6549-3550"]},"institutions":[{"id":"https://openalex.org/I91369620","display_name":"Uganda Virus Research Institute","ror":"https://ror.org/04509n826","country_code":"UG","type":"facility","lineage":["https://openalex.org/I91369620"]}],"countries":["UG"],"is_corresponding":false,"raw_author_name":"Alfred Ssekagiri","raw_affiliation_strings":["Department of General Virology, Uganda Virus Research Institute, Entebbe 256, Uganda"],"raw_orcid":"https://orcid.org/0000-0002-6549-3550","affiliations":[{"raw_affiliation_string":"Department of General Virology, Uganda Virus Research Institute, Entebbe 256, Uganda","institution_ids":["https://openalex.org/I91369620"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064379092","display_name":"Anne A. Kapaata","orcid":"https://orcid.org/0000-0002-0726-1276","observed_orcids":["https://orcid.org/0000-0002-0726-1276"]},"institutions":[{"id":"https://openalex.org/I4210089966","display_name":"London School of Hygiene & Tropical Medicine","ror":"https://ror.org/00a0jsq62","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210089966"]},{"id":"https://openalex.org/I4405277452","display_name":"MRC/UVRI & LSHTM Uganda Research Unit","ror":"https://ror.org/02qzk8434","country_code":"UG","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210087105","https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I90344618","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I91369620","display_name":"Uganda Virus Research Institute","ror":"https://ror.org/04509n826","country_code":"UG","type":"facility","lineage":["https://openalex.org/I91369620"]}],"countries":["GB","UG"],"is_corresponding":false,"raw_author_name":"Anne Kapaata","raw_affiliation_strings":["Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda","institution_ids":["https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618","https://openalex.org/I91369620"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051302353","display_name":"Maria Nannyonjo","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210089966","display_name":"London School of Hygiene & Tropical Medicine","ror":"https://ror.org/00a0jsq62","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210089966"]},{"id":"https://openalex.org/I4405277452","display_name":"MRC/UVRI & LSHTM Uganda Research Unit","ror":"https://ror.org/02qzk8434","country_code":"UG","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210087105","https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I90344618","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I91369620","display_name":"Uganda Virus Research Institute","ror":"https://ror.org/04509n826","country_code":"UG","type":"facility","lineage":["https://openalex.org/I91369620"]}],"countries":["GB","UG"],"is_corresponding":false,"raw_author_name":"Maria Nannyonjo","raw_affiliation_strings":["Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda","institution_ids":["https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618","https://openalex.org/I91369620"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008583435","display_name":"Faridah Nassolo","orcid":"https://orcid.org/0009-0005-1793-0444","observed_orcids":["https://orcid.org/0009-0005-1793-0444"]},"institutions":[{"id":"https://openalex.org/I4210089966","display_name":"London School of Hygiene & Tropical Medicine","ror":"https://ror.org/00a0jsq62","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210089966"]},{"id":"https://openalex.org/I4405277452","display_name":"MRC/UVRI & LSHTM Uganda Research Unit","ror":"https://ror.org/02qzk8434","country_code":"UG","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210087105","https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I90344618","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I91369620","display_name":"Uganda Virus Research Institute","ror":"https://ror.org/04509n826","country_code":"UG","type":"facility","lineage":["https://openalex.org/I91369620"]}],"countries":["GB","UG"],"is_corresponding":false,"raw_author_name":"Faridah Nassolo","raw_affiliation_strings":["Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda","institution_ids":["https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618","https://openalex.org/I91369620"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041020270","display_name":"Alex Karabarinde","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210089966","display_name":"London School of Hygiene & Tropical Medicine","ror":"https://ror.org/00a0jsq62","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210089966"]},{"id":"https://openalex.org/I4405277452","display_name":"MRC/UVRI & LSHTM Uganda Research Unit","ror":"https://ror.org/02qzk8434","country_code":"UG","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210087105","https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I90344618","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I91369620","display_name":"Uganda Virus Research Institute","ror":"https://ror.org/04509n826","country_code":"UG","type":"facility","lineage":["https://openalex.org/I91369620"]}],"countries":["GB","UG"],"is_corresponding":false,"raw_author_name":"Alex Karabarinde","raw_affiliation_strings":["Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda","institution_ids":["https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618","https://openalex.org/I91369620"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067476982","display_name":"Joseph Okello Mugisha","orcid":"https://orcid.org/0000-0002-0199-1518","observed_orcids":["https://orcid.org/0000-0002-0199-1518"]},"institutions":[{"id":"https://openalex.org/I4210089966","display_name":"London School of Hygiene & Tropical Medicine","ror":"https://ror.org/00a0jsq62","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210089966"]},{"id":"https://openalex.org/I4405277452","display_name":"MRC/UVRI & LSHTM Uganda Research Unit","ror":"https://ror.org/02qzk8434","country_code":"UG","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210087105","https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I90344618","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I91369620","display_name":"Uganda Virus Research Institute","ror":"https://ror.org/04509n826","country_code":"UG","type":"facility","lineage":["https://openalex.org/I91369620"]}],"countries":["GB","UG"],"is_corresponding":false,"raw_author_name":"Joseph Mugisha","raw_affiliation_strings":["Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda"],"raw_orcid":"https://orcid.org/0000-0002-0199-1518","affiliations":[{"raw_affiliation_string":"Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda","institution_ids":["https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618","https://openalex.org/I91369620"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082554238","display_name":"Janet Seeley","orcid":"https://orcid.org/0000-0002-0583-5272","observed_orcids":["https://orcid.org/0000-0002-0583-5272","https://orcid.org/0000-0003-2556-9335"]},"institutions":[{"id":"https://openalex.org/I4210089966","display_name":"London School of Hygiene & Tropical Medicine","ror":"https://ror.org/00a0jsq62","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210089966"]},{"id":"https://openalex.org/I4405277452","display_name":"MRC/UVRI & LSHTM Uganda Research Unit","ror":"https://ror.org/02qzk8434","country_code":"UG","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210087105","https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I90344618","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I91369620","display_name":"Uganda Virus Research Institute","ror":"https://ror.org/04509n826","country_code":"UG","type":"facility","lineage":["https://openalex.org/I91369620"]}],"countries":["GB","UG"],"is_corresponding":false,"raw_author_name":"Janet Seeley","raw_affiliation_strings":["Department of Global Health and Development, London School of Hygiene and Tropical Medicine, 15-17 Tavistock Place, London WC1H 9SH, UK","Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda"],"raw_orcid":"https://orcid.org/0000-0002-0583-5272","affiliations":[{"raw_affiliation_string":"Department of Global Health and Development, London School of Hygiene and Tropical Medicine, 15-17 Tavistock Place, London WC1H 9SH, UK","institution_ids":["https://openalex.org/I4210089966"]},{"raw_affiliation_string":"Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda","institution_ids":["https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618","https://openalex.org/I91369620"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088073007","display_name":"Gonzalo Yebra","orcid":"https://orcid.org/0000-0002-3472-3667","observed_orcids":["https://orcid.org/0000-0002-3472-3667"]},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gonzalo Yebra","raw_affiliation_strings":["The Roslin Institute, Royal (Dick) School of Veterinary Medicine, University of Edinburgh, Easter Bush Campus, Edinburgh EH25 9RG, UK"],"raw_orcid":"https://orcid.org/0000-0002-3472-3667","affiliations":[{"raw_affiliation_string":"The Roslin Institute, Royal (Dick) School of Veterinary Medicine, University of Edinburgh, Easter Bush Campus, Edinburgh EH25 9RG, UK","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101975805","display_name":"Andrew Brown","orcid":"https://orcid.org/0000-0002-5700-3128","observed_orcids":["https://orcid.org/0000-0002-5700-3128","https://orcid.org/0009-0003-9066-3413"]},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Leigh Brown","raw_affiliation_strings":["Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3FL, UK"],"raw_orcid":"https://orcid.org/0000-0002-5700-3128","affiliations":[{"raw_affiliation_string":"Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3FL, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002865552","display_name":"Pontiano Kaleebu","orcid":"https://orcid.org/0000-0001-9706-2977","observed_orcids":["https://orcid.org/0000-0001-9706-2977"]},"institutions":[{"id":"https://openalex.org/I4210089966","display_name":"London School of Hygiene & Tropical Medicine","ror":"https://ror.org/00a0jsq62","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210089966"]},{"id":"https://openalex.org/I4405277452","display_name":"MRC/UVRI & LSHTM Uganda Research Unit","ror":"https://ror.org/02qzk8434","country_code":"UG","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210087105","https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I90344618","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I91369620","display_name":"Uganda Virus Research Institute","ror":"https://ror.org/04509n826","country_code":"UG","type":"facility","lineage":["https://openalex.org/I91369620"]}],"countries":["GB","UG"],"is_corresponding":false,"raw_author_name":"Pontiano Kaleebu","raw_affiliation_strings":["Department of General Virology, Uganda Virus Research Institute, Entebbe 256, Uganda","Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of General Virology, Uganda Virus Research Institute, Entebbe 256, Uganda","institution_ids":["https://openalex.org/I91369620"]},{"raw_affiliation_string":"Medical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Entebbe 256, Uganda","institution_ids":["https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618","https://openalex.org/I91369620"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5071331157"],"corresponding_institution_ids":["https://openalex.org/I4210089966","https://openalex.org/I4405277452","https://openalex.org/I90344618","https://openalex.org/I91369620"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2112},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2112},"fwci":0.127,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.61503995,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":97},"biblio":{"volume":"12","issue":"11","first_page":"1283","last_page":"1283"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10082","display_name":"HIV/AIDS Research and Interventions","score":0.7827000021934509,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10082","display_name":"HIV/AIDS Research and Interventions","score":0.7827000021934509,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.18770000338554382,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11860","display_name":"HIV, Drug Use, Sexual Risk","score":0.00570000009611249,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hiv-1","display_name":"HIV-1","score":0.8360000252723694},{"id":"https://openalex.org/keywords/molecular-epidemiology","display_name":"molecular epidemiology","score":0.9610000252723694},{"id":"https://openalex.org/keywords/transmission-dynamics","display_name":"transmission dynamics","score":0.8539999723434448},{"id":"https://openalex.org/keywords/phylogeography","display_name":"phylogeography","score":0.8849999904632568},{"id":"https://openalex.org/keywords/viral-dissemination","display_name":"viral dissemination","score":0.5590000152587891},{"id":"https://openalex.org/keywords/virus-introduction","display_name":"virus introduction","score":0.652999997138977},{"id":"https://openalex.org/keywords/general-population-cohort","display_name":"general population cohort","score":0.6600000262260437},{"id":"https://openalex.org/keywords/uganda","display_name":"Uganda","score":0.5889999866485596}],"concepts":[{"id":"https://openalex.org/C107130276","wikidata":"https://www.wikidata.org/wiki/Q133805","display_name":"Epidemiology","level":2,"score":0.7012661695480347},{"id":"https://openalex.org/C97669555","wikidata":"https://www.wikidata.org/wiki/Q4118435","display_name":"Molecular epidemiology","level":4,"score":0.5815702080726624},{"id":"https://openalex.org/C72563966","wikidata":"https://www.wikidata.org/wiki/Q1303415","display_name":"Cohort","level":2,"score":0.5726943016052246},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.562702476978302},{"id":"https://openalex.org/C761482","wikidata":"https://www.wikidata.org/wiki/Q118093","display_name":"Transmission (telecommunications)","level":2,"score":0.5583335757255554},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5522826910018921},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.4966188073158264},{"id":"https://openalex.org/C201903717","wikidata":"https://www.wikidata.org/wiki/Q1778788","display_name":"Cohort study","level":2,"score":0.4560719132423401},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4082682430744171},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.3700130581855774},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.36248111724853516},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33514660596847534},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.33309996128082275},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18699157238006592},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.12390518188476562},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.10856509208679199},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.08664733171463013},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.062075138092041016},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008875","descriptor_name":"Middle Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012367","descriptor_name":"RNA, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014454","descriptor_name":"Uganda","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D015331","descriptor_name":"Cohort Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000635","qualifier_name":"transmission","is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.3390/v12111283","doi":"https://doi.org/10.3390/v12111283","is_oa":true,"landing_page_url":"https://doi.org/10.3390/v12111283","pdf_url":"https://www.mdpi.com/1999-4915/12/11/1283/pdf","source":{"id":"https://openalex.org/S55776271","display_name":"Viruses","issn_l":"1999-4915","issn":["1999-4915"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","medline","norway-1","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Viruses","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7697205","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7697205","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Viruses","raw_type":"Text"},{"id":"pmid:33182587","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33182587","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Viruses","raw_type":"Journal Article"},{"id":"pmh:oai:researchonline.lshtm.ac.uk:4658228","doi":null,"is_oa":false,"landing_page_url":"https://researchonline.lshtm.ac.uk/view/creators/lshds1.html>;","pdf_url":null,"source":{"id":"https://openalex.org/S4306402527","display_name":"LSHTM Research Online (London School of Hygiene and Tropical Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210089966","host_organization_name":"London School of Hygiene & Tropical Medicine","host_organization_lineage":["https://openalex.org/I4210089966"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:pure.ed.ac.uk:openaire/79db815f-a011-4469-94d3-2053562b3010","doi":null,"is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/files/180304767/viruses_12_01283.pdf","pdf_url":"https://www.research.ed.ac.uk/files/180304767/viruses_12_01283.pdf","source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Ssemwanga, D, Bbosa, N, Nsubuga, R N, Ssekagiri, A, Kapaata, A, Nannyonjo, M, Nassolo, F, Karabarinde, A, Mugisha, J, Seeley, J, Yebra, G, Leigh Brown, A & Kaleebu, P 2020, 'The Molecular Epidemiology and Transmission Dynamics of HIV Type 1 in a General Population Cohort in Uganda', Viruses, vol. 12, no. 11. https://doi.org/10.3390/v12111283","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:496d307ce75240cca7f09d961e3351e5","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/496d307ce75240cca7f09d961e3351e5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Viruses, Vol 12, Iss 11, p 1283 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/v12111283","doi":"https://doi.org/10.3390/v12111283","is_oa":true,"landing_page_url":"https://doi.org/10.3390/v12111283","pdf_url":"https://www.mdpi.com/1999-4915/12/11/1283/pdf","source":{"id":"https://openalex.org/S55776271","display_name":"Viruses","issn_l":"1999-4915","issn":["1999-4915"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","medline","norway-1","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Viruses","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.979200005531311}],"study_designs":[{"display_name":"Observational Study","id":"https://openalex.org/study-designs/observational-study"}],"awards":[{"id":"https://openalex.org/G2521406340","display_name":"MRC/UVRI Medical Informatics Centre","funder_award_id":"MC_EX_MR/L016273/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G478398311","display_name":"Pathogen Genomics, Phenotype and Immunity (PGPI) &amp; Basic Sciences Programme","funder_award_id":"MC_UU_00027/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3098458366.pdf","grobid_xml":"https://content.openalex.org/works/W3098458366.grobid-xml"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W1692577869","https://openalex.org/W1895490982","https://openalex.org/W1969028669","https://openalex.org/W1981174123","https://openalex.org/W1981581556","https://openalex.org/W1993839270","https://openalex.org/W2003698421","https://openalex.org/W2006338846","https://openalex.org/W2006763577","https://openalex.org/W2015746132","https://openalex.org/W2018871822","https://openalex.org/W2023454109","https://openalex.org/W2024612778","https://openalex.org/W2029528365","https://openalex.org/W2030966943","https://openalex.org/W2048253923","https://openalex.org/W2053802479","https://openalex.org/W2061842023","https://openalex.org/W2069029490","https://openalex.org/W2073848459","https://openalex.org/W2081095866","https://openalex.org/W2088267428","https://openalex.org/W2094939159","https://openalex.org/W2098232873","https://openalex.org/W2105811945","https://openalex.org/W2110570635","https://openalex.org/W2111211467","https://openalex.org/W2113434524","https://openalex.org/W2116049022","https://openalex.org/W2119284380","https://openalex.org/W2127320825","https://openalex.org/W2127847431","https://openalex.org/W2137015675","https://openalex.org/W2139246816","https://openalex.org/W2139757817","https://openalex.org/W2146602601","https://openalex.org/W2155998147","https://openalex.org/W2156358357","https://openalex.org/W2162791194","https://openalex.org/W2164977615","https://openalex.org/W2165659928","https://openalex.org/W2166009925","https://openalex.org/W2167395899","https://openalex.org/W2169852398","https://openalex.org/W2171142493","https://openalex.org/W2206876875","https://openalex.org/W2290990107","https://openalex.org/W2322358787","https://openalex.org/W2336948744","https://openalex.org/W2470451908","https://openalex.org/W2573650539","https://openalex.org/W2578242640","https://openalex.org/W2587910371","https://openalex.org/W2610466423","https://openalex.org/W2749654856","https://openalex.org/W2763389670","https://openalex.org/W2788154942","https://openalex.org/W2793085614","https://openalex.org/W2911461757","https://openalex.org/W2912792771","https://openalex.org/W2924309353","https://openalex.org/W2979636259","https://openalex.org/W2981973513","https://openalex.org/W3000567409","https://openalex.org/W3007664036","https://openalex.org/W3010739279","https://openalex.org/W4249949701","https://openalex.org/W4295942354"],"related_works":["https://openalex.org/W2588153697","https://openalex.org/W2912792771","https://openalex.org/W7134236469","https://openalex.org/W7196963139","https://openalex.org/W3216859709","https://openalex.org/W4416160839","https://openalex.org/W4226113628","https://openalex.org/W7104567735","https://openalex.org/W7098230766","https://openalex.org/W2073848459"],"abstract_inverted_index":{"=":[0,22,31,44],"8)":[1],"involved":[2],"individuals":[3],"from":[4,61],"the":[5,41,62,72,81,89],"GPC.":[6,73,82],"In":[7],"a":[8,38],"multivariate":[9],"analysis,":[10],"clustering":[11],"was":[12],"strongly":[13],"associated":[14],"with":[15],"being":[16,27,37],"female":[17],"(adjusted":[18],"Odds":[19],"Ratio,":[20],"aOR":[21],"1.28;":[23],"95%":[24,33,46],"CI,":[25,34,47],"1.06-1.54),":[26],">25":[28],"years":[29],"(aOR":[30,43],"1.52;":[32],"1.16-2.0)":[35],"and":[36],"resident":[39],"in":[40,80,88],"GPC":[42,63,90],"6.90;":[45],"5.22-9.21).":[48],"Phylogeographic":[49],"analysis":[50],"showed":[51],"significant":[52,65],"viral":[53,66],"dissemination":[54],"(Bayes":[55],"Factor":[56],"test,":[57],"BF":[58],">":[59],"3)":[60,70],"without":[64],"introductions":[67],"(BF":[68],"<":[69],"into":[71],"The":[74],"findings":[75],"suggest":[76],"localized":[77],"HIV-1":[78,95],"transmission":[79],"Intensifying":[83],"geographically":[84],"focused":[85],"combination":[86],"interventions":[87],"would":[91],"contribute":[92],"towards":[93],"controlling":[94],"infections.":[96]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1}],"updated_date":"2026-11-03T10:50:19.383937","created_date":"2020-11-23T00:00:00"}