{"id":"https://openalex.org/W3097200895","doi":"https://doi.org/10.1080/22221751.2020.1844552","title":"Massive dissemination of a SARS-CoV-2 Spike Y839 variant in Portugal","display_name":"Massive dissemination of a SARS-CoV-2 Spike Y839 variant in Portugal","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3097200895","doi":"https://doi.org/10.1080/22221751.2020.1844552","mag":"3097200895","pmid":"https://pubmed.ncbi.nlm.nih.gov/33131453","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/7717510"},"language":"en","primary_location":{"id":"doi:10.1080/22221751.2020.1844552","doi":"https://doi.org/10.1080/22221751.2020.1844552","is_oa":true,"landing_page_url":"https://doi.org/10.1080/22221751.2020.1844552","pdf_url":null,"source":{"id":"https://openalex.org/S2764760790","display_name":"Emerging Microbes & Infections","issn_l":"2222-1751","issn":["2222-1751"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Emerging Microbes & Infections","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1080/22221751.2020.1844552","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037909632","display_name":"V\u00edtor Borges","orcid":"https://orcid.org/0000-0003-3767-2209","observed_orcids":["https://orcid.org/0000-0003-3767-2209"]},"institutions":[{"id":"https://openalex.org/I4210142220","display_name":"National Institute of Health Dr. Ricardo Jorge","ror":"https://ror.org/03mx8d427","country_code":"PT","type":"other","lineage":["https://openalex.org/I4210117458","https://openalex.org/I4210142220","https://openalex.org/I4210157859"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"V\u00edtor Borges","raw_affiliation_strings":["National Institute of Health Doutor Ricardo Jorge (INSA)","Bioinformatics Unit, Department of Infectious Diseases, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal"],"raw_orcid":"https://orcid.org/0000-0003-3767-2209","affiliations":[{"raw_affiliation_string":"National Institute of Health Doutor Ricardo Jorge (INSA)","institution_ids":["https://openalex.org/I4210142220"]},{"raw_affiliation_string":"Bioinformatics Unit, Department of Infectious Diseases, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal","institution_ids":["https://openalex.org/I4210142220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008152164","display_name":"Joana Isidro","orcid":"https://orcid.org/0000-0002-8529-9878","observed_orcids":["https://orcid.org/0000-0002-8529-9878"]},"institutions":[{"id":"https://openalex.org/I4210142220","display_name":"National Institute of Health Dr. Ricardo Jorge","ror":"https://ror.org/03mx8d427","country_code":"PT","type":"other","lineage":["https://openalex.org/I4210117458","https://openalex.org/I4210142220","https://openalex.org/I4210157859"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Joana Isidro","raw_affiliation_strings":["National Institute of Health Doutor Ricardo Jorge (INSA)","Bioinformatics Unit, Department of Infectious Diseases, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal"],"raw_orcid":"https://orcid.org/0000-0002-8529-9878","affiliations":[{"raw_affiliation_string":"National Institute of Health Doutor Ricardo Jorge (INSA)","institution_ids":["https://openalex.org/I4210142220"]},{"raw_affiliation_string":"Bioinformatics Unit, Department of Infectious Diseases, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal","institution_ids":["https://openalex.org/I4210142220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014094333","display_name":"Helena Cortes Martins","orcid":"https://orcid.org/0000-0003-4450-1918","observed_orcids":["https://orcid.org/0000-0003-4450-1918"]},"institutions":[{"id":"https://openalex.org/I4210142220","display_name":"National Institute of Health Dr. Ricardo Jorge","ror":"https://ror.org/03mx8d427","country_code":"PT","type":"other","lineage":["https://openalex.org/I4210117458","https://openalex.org/I4210142220","https://openalex.org/I4210157859"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Helena Cortes-Martins","raw_affiliation_strings":["National Institute of Health Doutor Ricardo Jorge (INSA)","Reference and Surveillance Unit, Department of Infectious Diseases, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Health Doutor Ricardo Jorge (INSA)","institution_ids":["https://openalex.org/I4210142220"]},{"raw_affiliation_string":"Reference and Surveillance Unit, Department of Infectious Diseases, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal","institution_ids":["https://openalex.org/I4210142220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085155561","display_name":"S\u00edlvia Duarte","orcid":"https://orcid.org/0000-0003-2943-5975","observed_orcids":["https://orcid.org/0000-0003-2943-5975"]},"institutions":[{"id":"https://openalex.org/I4210142220","display_name":"National Institute of Health Dr. Ricardo Jorge","ror":"https://ror.org/03mx8d427","country_code":"PT","type":"other","lineage":["https://openalex.org/I4210117458","https://openalex.org/I4210142220","https://openalex.org/I4210157859"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"S\u00edlvia Duarte","raw_affiliation_strings":["National Institute of Health Doutor Ricardo Jorge (INSA)","Innovation and Technology Unit, Department of Human Genetics, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Health Doutor Ricardo Jorge (INSA)","institution_ids":["https://openalex.org/I4210142220"]},{"raw_affiliation_string":"Innovation and Technology Unit, Department of Human Genetics, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal","institution_ids":["https://openalex.org/I4210142220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038903900","display_name":"Lu\u00edsa Mota\u2010Vieira","orcid":"https://orcid.org/0000-0003-1451-6705","observed_orcids":["https://orcid.org/0000-0003-1451-6705"]},"institutions":[{"id":"https://openalex.org/I4210142220","display_name":"National Institute of Health Dr. Ricardo Jorge","ror":"https://ror.org/03mx8d427","country_code":"PT","type":"other","lineage":["https://openalex.org/I4210117458","https://openalex.org/I4210142220","https://openalex.org/I4210157859"]},{"id":"https://openalex.org/I83558840","display_name":"Universidade Nova de Lisboa","ror":"https://ror.org/02xankh89","country_code":"PT","type":"education","lineage":["https://openalex.org/I83558840"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Lu\u00eds Vieira","raw_affiliation_strings":["National Institute of Health Doutor Ricardo Jorge (INSA)","Universidade Nova de Lisboa","Innovation and Technology Unit, Department of Human Genetics, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Health Doutor Ricardo Jorge (INSA)","institution_ids":["https://openalex.org/I4210142220"]},{"raw_affiliation_string":"Universidade Nova de Lisboa","institution_ids":["https://openalex.org/I83558840"]},{"raw_affiliation_string":"Innovation and Technology Unit, Department of Human Genetics, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal","institution_ids":["https://openalex.org/I4210142220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014792017","display_name":"Ricardo B. Leite","orcid":"https://orcid.org/0000-0002-9622-3895","observed_orcids":["https://orcid.org/0000-0002-9622-3895","https://orcid.org/0000-0001-8105-7161"]},"institutions":[{"id":"https://openalex.org/I48057805","display_name":"Instituto Gulbenkian de Ci\u00eancia","ror":"https://ror.org/04b08hq31","country_code":"PT","type":"education","lineage":["https://openalex.org/I4405252639","https://openalex.org/I48057805"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Ricardo Leite","raw_affiliation_strings":["Instituto Gulbenkian de Ci\u00eancia (IGC)"],"raw_orcid":"https://orcid.org/0000-0002-9622-3895","affiliations":[{"raw_affiliation_string":"Instituto Gulbenkian de Ci\u00eancia (IGC)","institution_ids":["https://openalex.org/I48057805"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091837645","display_name":"Isabel Gordo","orcid":"https://orcid.org/0000-0003-1622-5143","observed_orcids":["https://orcid.org/0000-0003-1622-5143"]},"institutions":[{"id":"https://openalex.org/I48057805","display_name":"Instituto Gulbenkian de Ci\u00eancia","ror":"https://ror.org/04b08hq31","country_code":"PT","type":"education","lineage":["https://openalex.org/I4405252639","https://openalex.org/I48057805"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Isabel Gordo","raw_affiliation_strings":["Instituto Gulbenkian de Ci\u00eancia (IGC)"],"raw_orcid":"https://orcid.org/0000-0003-1622-5143","affiliations":[{"raw_affiliation_string":"Instituto Gulbenkian de Ci\u00eancia (IGC)","institution_ids":["https://openalex.org/I48057805"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081296556","display_name":"Constantino Caetano","orcid":"https://orcid.org/0000-0002-6569-7772","observed_orcids":["https://orcid.org/0000-0002-6569-7772"]},"institutions":[{"id":"https://openalex.org/I4210142220","display_name":"National Institute of Health Dr. Ricardo Jorge","ror":"https://ror.org/03mx8d427","country_code":"PT","type":"other","lineage":["https://openalex.org/I4210117458","https://openalex.org/I4210142220","https://openalex.org/I4210157859"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Constantino P. Caetano","raw_affiliation_strings":["National Institute of Health Doutor Ricardo Jorge (INSA)","Department of Epidemiology, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Health Doutor Ricardo Jorge (INSA)","institution_ids":["https://openalex.org/I4210142220"]},{"raw_affiliation_string":"Department of Epidemiology, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal","institution_ids":["https://openalex.org/I4210142220"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Baltazar Nunes","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210142220","display_name":"National Institute of Health Dr. Ricardo Jorge","ror":"https://ror.org/03mx8d427","country_code":"PT","type":"other","lineage":["https://openalex.org/I4210117458","https://openalex.org/I4210142220","https://openalex.org/I4210157859"]},{"id":"https://openalex.org/I83558840","display_name":"Universidade Nova de Lisboa","ror":"https://ror.org/02xankh89","country_code":"PT","type":"education","lineage":["https://openalex.org/I83558840"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Baltazar Nunes","raw_affiliation_strings":["Escola Nacional de Sa\u00fade P\u00fablica, Universidade Nova de Lisboa","National Institute of Health Doutor Ricardo Jorge (INSA)","Department of Epidemiology, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Escola Nacional de Sa\u00fade P\u00fablica, Universidade Nova de Lisboa","institution_ids":["https://openalex.org/I83558840"]},{"raw_affiliation_string":"National Institute of Health Doutor Ricardo Jorge (INSA)","institution_ids":["https://openalex.org/I4210142220"]},{"raw_affiliation_string":"Department of Epidemiology, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal","institution_ids":["https://openalex.org/I4210142220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064953532","display_name":"Regina S\u00e1","orcid":"https://orcid.org/0000-0001-9978-2716","observed_orcids":["https://orcid.org/0000-0001-9978-2716"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Regina S\u00e1","raw_affiliation_strings":["Central Regional Health Administration","Public Health Unit, Primary Care Cluster of Baixo Vouga, Central Regional Health Administration, Aveiro, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central Regional Health Administration","institution_ids":[]},{"raw_affiliation_string":"Public Health Unit, Primary Care Cluster of Baixo Vouga, Central Regional Health Administration, Aveiro, Portugal","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101679211","display_name":"ANDREZA ESTEFANY DA SILVA OLIVEIRA","orcid":"https://orcid.org/0000-0001-9334-5101","observed_orcids":["https://orcid.org/0000-0001-9334-5101"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ana Oliveira","raw_affiliation_strings":["Central Regional Health Administration","Public Health Unit, Primary Care Cluster of Baixo Vouga, Central Regional Health Administration, Aveiro, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central Regional Health Administration","institution_ids":[]},{"raw_affiliation_string":"Public Health Unit, Primary Care Cluster of Baixo Vouga, Central Regional Health Administration, Aveiro, Portugal","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082955366","display_name":"Raquel Guiomar","orcid":"https://orcid.org/0000-0002-4563-6315","observed_orcids":["https://orcid.org/0000-0002-4563-6315"]},"institutions":[{"id":"https://openalex.org/I4210142220","display_name":"National Institute of Health Dr. Ricardo Jorge","ror":"https://ror.org/03mx8d427","country_code":"PT","type":"other","lineage":["https://openalex.org/I4210117458","https://openalex.org/I4210142220","https://openalex.org/I4210157859"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Raquel Guiomar","raw_affiliation_strings":["National Institute of Health Doutor Ricardo Jorge (INSA)","National Reference Laboratory for Influenza and other Respiratory Viruses, Department of Infectious Diseases, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Health Doutor Ricardo Jorge (INSA)","institution_ids":["https://openalex.org/I4210142220"]},{"raw_affiliation_string":"National Reference Laboratory for Influenza and other Respiratory Viruses, Department of Infectious Diseases, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal","institution_ids":["https://openalex.org/I4210142220"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Portuguese network for SARS-CoV-2 genomics","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210142220","display_name":"National Institute of Health Dr. Ricardo Jorge","ror":"https://ror.org/03mx8d427","country_code":"PT","type":"other","lineage":["https://openalex.org/I4210117458","https://openalex.org/I4210142220","https://openalex.org/I4210157859"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Portuguese network for SARS-CoV-2 genomics","raw_affiliation_strings":["Bioinformatics Unit, Department of Infectious Diseases, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Unit, Department of Infectious Diseases, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal","institution_ids":["https://openalex.org/I4210142220"]}]},{"author_position":"last","author":{"id":null,"display_name":"Jo\u00e3o Paulo Gomes","orcid":"https://orcid.org/0000-0002-2697-2399","observed_orcids":["https://orcid.org/0000-0002-2697-2399"]},"institutions":[{"id":"https://openalex.org/I4210142220","display_name":"National Institute of Health Dr. Ricardo Jorge","ror":"https://ror.org/03mx8d427","country_code":"PT","type":"other","lineage":["https://openalex.org/I4210117458","https://openalex.org/I4210142220","https://openalex.org/I4210157859"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Jo\u00e3o Paulo Gomes","raw_affiliation_strings":["National Institute of Health Doutor Ricardo Jorge (INSA)"],"raw_orcid":"https://orcid.org/0000-0002-2697-2399","affiliations":[{"raw_affiliation_string":"National Institute of Health Doutor Ricardo Jorge (INSA)","institution_ids":["https://openalex.org/I4210142220"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210142220"],"apc_list":{"value":2155,"currency":"GBP","value_usd":2643},"apc_paid":{"value":2155,"currency":"GBP","value_usd":2643},"fwci":0.8429,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.86665644,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"9","issue":"1","first_page":"2488","last_page":"2496"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.0019000000320374966,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10041","display_name":"COVID-19 Clinical Research Studies","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sars-cov-2","display_name":"SARS-CoV-2","score":0.9950000047683716},{"id":"https://openalex.org/keywords/spike-protein","display_name":"spike protein","score":0.6129999756813049},{"id":"https://openalex.org/keywords/genomic-surveillance","display_name":"genomic surveillance","score":0.7229999899864197},{"id":"https://openalex.org/keywords/superspreading","display_name":"superspreading","score":0.6890000104904175},{"id":"https://openalex.org/keywords/founder-effect","display_name":"founder effect","score":0.6240000128746033},{"id":"https://openalex.org/keywords/covid-19-epidemic","display_name":"COVID-19 epidemic","score":0.6389999985694885},{"id":"https://openalex.org/keywords/portugal","display_name":"Portugal","score":0.6420000195503235},{"id":"https://openalex.org/keywords/italy","display_name":"Italy","score":0.42399999499320984},{"id":"https://openalex.org/keywords/selective-advantage","display_name":"selective advantage","score":0.5540000200271606},{"id":"https://openalex.org/keywords/fusion-peptide","display_name":"fusion peptide","score":0.4580000042915344}],"concepts":[{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.5118700861930847},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.46680739521980286},{"id":"https://openalex.org/C2781390188","wikidata":"https://www.wikidata.org/wiki/Q25203449","display_name":"Spike (software development)","level":2,"score":0.4655386209487915},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.4368254542350769},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4179905354976654},{"id":"https://openalex.org/C3006700255","wikidata":"https://www.wikidata.org/wiki/Q81068910","display_name":"2019-20 coronavirus outbreak","level":3,"score":0.4108952581882477},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.39179790019989014},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3681676387786865},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2930220663547516},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.20994463562965393},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.10299912095069885},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000635","qualifier_name":"transmission","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011174","descriptor_name":"Portugal","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D012720","descriptor_name":"Severity of Illness Index","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062665","descriptor_name":"Epidemiological Monitoring","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1080/22221751.2020.1844552","doi":"https://doi.org/10.1080/22221751.2020.1844552","is_oa":true,"landing_page_url":"https://doi.org/10.1080/22221751.2020.1844552","pdf_url":null,"source":{"id":"https://openalex.org/S2764760790","display_name":"Emerging Microbes & Infections","issn_l":"2222-1751","issn":["2222-1751"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Emerging Microbes & Infections","raw_type":"journal-article"},{"id":"doi:10.1101/2020.08.10.20171884","doi":"https://doi.org/10.1101/2020.08.10.20171884","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2020.08.10.20171884","pdf_url":"https://www.medrxiv.org/content/medrxiv/early/2020/08/12/2020.08.10.20171884.full.pdf","source":{"id":"https://openalex.org/S3005729997","display_name":"medRxiv","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":["https://openalex.org/P4310315909"],"host_organization_lineage_names":["Cold Spring Harbor Laboratory Press"],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"medRxiv","raw_type":"posted-content"},{"id":"pmh:oai:pubmedcentral.nih.gov:7717510","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7717510","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Emerg Microbes Infect","raw_type":"Text"},{"id":"pmid:33131453","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33131453","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Emerging microbes & infections","raw_type":"Journal Article"},{"id":"pmh:oai:run.unl.pt:10362/108223","doi":null,"is_oa":true,"landing_page_url":"https://www.scopus.com/pages/publications/85096763202","pdf_url":"https://run.unl.pt/bitstream/10362/108223/1/Massive_dissemination_of_a_SARS_CoV_2_Spike_Y839_variant_in_Portugal.pdf","source":{"id":"https://openalex.org/S4306402433","display_name":"Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:bibliotecadigital.unipb.pt:10198/27403","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/10198/27403","pdf_url":null,"source":{"id":"https://openalex.org/S4306402433","display_name":"Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:doaj.org/article:7a910556925c43b38924c09392b9d9ec","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/7a910556925c43b38924c09392b9d9ec","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Emerging Microbes and Infections, Vol 9, Iss 1, Pp 2488-2496 (2020)","raw_type":"article"},{"id":"pmh:oai:repositorio.insa.pt:10400.18/7607","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/10400.18/7607","pdf_url":null,"source":{"id":"https://openalex.org/S4306402433","display_name":"Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1080/22221751.2020.1844552","doi":"https://doi.org/10.1080/22221751.2020.1844552","is_oa":true,"landing_page_url":"https://doi.org/10.1080/22221751.2020.1844552","pdf_url":null,"source":{"id":"https://openalex.org/S2764760790","display_name":"Emerging Microbes & Infections","issn_l":"2222-1751","issn":["2222-1751"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Emerging Microbes & Infections","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.8560000061988831}],"study_designs":[{"id":"https://openalex.org/study-designs/observational-study","display_name":"Observational Study"}],"awards":[{"id":"https://openalex.org/G1167214205","display_name":null,"funder_award_id":"COMPETE","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G1516346500","display_name":null,"funder_award_id":"01-0145","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G1578237752","display_name":null,"funder_award_id":"COMPETE","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G1763632427","display_name":null,"funder_award_id":"POCI-01-0145","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G274581676","display_name":null,"funder_award_id":"POCI-01","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G323769159","display_name":null,"funder_award_id":"PORTUGAL 2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3840324753","display_name":null,"funder_award_id":"POCI-01-0145-FEDER-","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3891694003","display_name":null,"funder_award_id":"COMPETE_2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G491858407","display_name":null,"funder_award_id":"COMPETE2020","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G5224927334","display_name":null,"funder_award_id":"POCI-01-","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5485649731","display_name":null,"funder_award_id":"PORTUGAL2020","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G6009068069","display_name":null,"funder_award_id":"POCI-01-0145-FEDER-022184","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G778408385","display_name":null,"funder_award_id":"POCI\\01\\0145\\FEDER\\022184","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G7965899483","display_name":null,"funder_award_id":"POCI-01-0145- FEDER","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320320290","display_name":"University of Oxford","ror":"https://ror.org/052gg0110"},{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3097200895.pdf","grobid_xml":"https://content.openalex.org/works/W3097200895.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1966238900","https://openalex.org/W1982533785","https://openalex.org/W2012505332","https://openalex.org/W2111647009","https://openalex.org/W2127774996","https://openalex.org/W2560057613","https://openalex.org/W2605343262","https://openalex.org/W2616925143","https://openalex.org/W2786692372","https://openalex.org/W2940431758","https://openalex.org/W2951878836","https://openalex.org/W2952045272","https://openalex.org/W3004280078","https://openalex.org/W3009335299","https://openalex.org/W3011127849","https://openalex.org/W3013800395","https://openalex.org/W3014067025","https://openalex.org/W3014912119","https://openalex.org/W3015059505","https://openalex.org/W3015281372","https://openalex.org/W3022435472","https://openalex.org/W3039901154","https://openalex.org/W3040670268","https://openalex.org/W3041761346","https://openalex.org/W3042332408","https://openalex.org/W3043124965","https://openalex.org/W3043431476","https://openalex.org/W3048671222","https://openalex.org/W3080788969","https://openalex.org/W3088054800","https://openalex.org/W3098794734"],"related_works":["https://openalex.org/W3163734932","https://openalex.org/W3086901097","https://openalex.org/W3179821946","https://openalex.org/W3134822027","https://openalex.org/W3197379990","https://openalex.org/W7156384826","https://openalex.org/W4414606103","https://openalex.org/W3164262450","https://openalex.org/W3172432652","https://openalex.org/W3167746138"],"abstract_inverted_index":{"Genomic":[0],"surveillance":[1,242],"of":[2,13,21,30,53,94,102,125,132,154,163,183,207,246],"SARS-CoV-2":[3,32,62,225],"was":[4,68],"rapidly":[5],"implemented":[6],"in":[7,15,38,61,74,80,88,187,221,231,234],"Portugal":[8,81,95,188],"by":[9,107],"the":[10,27,44,83,89,103,117,130,147,151,155,200,238],"National":[11],"Institute":[12],"Health":[14],"collaboration":[16],"with":[17,34,174],"a":[18,31,35,39,50,58,161],"nationwide":[19],"consortium":[20],">50":[22],"hospitals/laboratories.":[23],"Here,":[24],"we":[25,137],"track":[26],"geotemporal":[28],"spread":[29],"variant":[33,67,158,202],"mutation":[36],"(D839Y)":[37],"potential":[40,205],"host-interacting":[41],"region":[42],"involving":[43],"Spike":[45,65,156,226,247],"fusion":[46],"peptide,":[47],"which":[48],"is":[49,210,216],"target":[51],"motif":[52],"anti-viral":[54],"drugs":[55],"that":[56],"plays":[57],"key":[59],"role":[60],"infectivity.":[63],"The":[64,204],"Y839":[66,157,201],"most":[69],"likely":[70],"imported":[71],"from":[72],"Italy":[73],"mid-late":[75],"February":[76],"and":[77,91,100,122,134,143,243],"massively":[78],"disseminated":[79],"during":[82,116,189],"early":[84,118],"epidemic,":[85],"becoming":[86],"prevalent":[87],"Northern":[90],"Central":[92],"regions":[93],"where":[96],"it":[97],"represented":[98],"22%":[99],"59%":[101],"sampled":[104],"genomes,":[105],"respectively,":[106],"30":[108],"April.":[109],"Based":[110],"on":[111],"our":[112],"high":[113],"sequencing":[114],"sampling":[115,223],"epidemics":[119],"[15.5%":[120],"(1275/8251)":[121],"6.0%":[123],"(1500/24987)":[124],"all":[126,184],"confirmed":[127],"cases":[128,186],"until":[129],"end":[131],"March":[133,142],"April,":[135],"respectively],":[136],"estimate":[138],"that,":[139],"between":[140],"14":[141],"9":[144],"April":[145],"(covering":[146],"epidemic":[148],"exponential":[149],"phase)":[150],"relative":[152],"frequency":[153],"increased":[159],"at":[160],"rate":[162],"12.1%":[164],"(6.1%-18.2%,":[165],"CI":[166,177,181],"95%)":[167,182],"every":[168],"three":[169],"days,":[170],"being":[171],"potentially":[172],"associated":[173],"24.8%":[175],"(20.8-29.7%,":[176],"95%;":[178],"3177-4542":[179],"cases,":[180],"COVID-19":[185],"this":[190],"period.":[191],"Our":[192],"data":[193],"supports":[194],"population/epidemiological":[195],"(founder)":[196],"effects":[197],"contributing":[198],"to":[199],"superspread.":[203],"existence":[206],"selective":[208],"advantage":[209],"also":[211],"discussed,":[212],"although":[213],"experimental":[214],"validation":[215],"required.":[217],"Despite":[218],"huge":[219],"differences":[220],"genome":[222],"worldwide,":[224],"D839Y":[227],"has":[228],"been":[229],"detected":[230],"13":[232],"countries":[233],"four":[235],"continents,":[236],"supporting":[237],"need":[239],"for":[240],"close":[241],"functional":[244],"assays":[245],"variants.":[248]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":1}],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2020-11-09T00:00:00"}