{"id":"https://openalex.org/W3094180751","doi":"https://doi.org/10.1016/j.pld.2020.10.001","title":"Plastome and phylogenetic relationship of the woody buckwheat Fagopyrum tibeticum in the Qinghai-Tibet Plateau","display_name":"Plastome and phylogenetic relationship of the woody buckwheat Fagopyrum tibeticum in the Qinghai-Tibet Plateau","publication_year":2020,"publication_date":"2020-10-23","ids":{"openalex":"https://openalex.org/W3094180751","doi":"https://doi.org/10.1016/j.pld.2020.10.001","mag":"3094180751","pmid":"https://pubmed.ncbi.nlm.nih.gov/34195504","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/8233517"},"language":"en","primary_location":{"id":"doi:10.1016/j.pld.2020.10.001","doi":"https://doi.org/10.1016/j.pld.2020.10.001","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.pld.2020.10.001","pdf_url":"https://www.sciencedirect.com/science/article/pii/S2468265920301074/pdf","source":{"id":"https://openalex.org/S123216674","display_name":"Acta Botanica Yunnanica","issn_l":"0253-2700","issn":["0253-2700","2095-0845","2096-2703","2468-2659"],"is_oa":true,"is_in_doaj":true,"is_core":false,"listed_in":["doaj","dongbi-b","oarl","poland-20","russia-white-list-1"],"host_organization":"https://openalex.org/P4310319982","host_organization_name":"Science Press","host_organization_lineage":["https://openalex.org/P4310319982"],"host_organization_lineage_names":["Science Press"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Diversity","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.sciencedirect.com/science/article/pii/S2468265920301074/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038197305","display_name":"Bibo Yang","orcid":"https://orcid.org/0000-0001-9997-7257","observed_orcids":["https://orcid.org/0000-0001-9997-7257"]},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bibo Yang","raw_affiliation_strings":["Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China"],"raw_orcid":"https://orcid.org/0000-0001-9997-7257","affiliations":[{"raw_affiliation_string":"Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Liangda Li","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liangda Li","raw_affiliation_strings":["Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031851632","display_name":"Jianquan Liu","orcid":"https://orcid.org/0000-0002-4237-7418","observed_orcids":["https://orcid.org/0000-0002-4237-7418"]},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianquan Liu","raw_affiliation_strings":["Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071249579","display_name":"Lushui Zhang","orcid":"https://orcid.org/0000-0002-6213-849X","observed_orcids":["https://orcid.org/0000-0002-6213-849X"]},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lushui Zhang","raw_affiliation_strings":["Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China"],"raw_orcid":"https://orcid.org/0000-0002-6213-849X","affiliations":[{"raw_affiliation_string":"Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China","institution_ids":["https://openalex.org/I24185976"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5071249579"],"corresponding_institution_ids":["https://openalex.org/I24185976"],"apc_list":{"value":0,"currency":"USD","value_usd":0},"apc_paid":null,"fwci":2.4565,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.89145773,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"43","issue":"3","first_page":"198","last_page":"205"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.9340999722480774,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.9340999722480774,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13168","display_name":"Plant Ecology and Taxonomy Studies","score":0.038600001484155655,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12568","display_name":"Plant Taxonomy and Phylogenetics","score":0.014600000344216824,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/polygonaceae","display_name":"Polygonaceae","score":0.859000027179718},{"id":"https://openalex.org/keywords/chloroplast-genome","display_name":"chloroplast genome","score":0.8970000147819519},{"id":"https://openalex.org/keywords/phylogenetic-position","display_name":"phylogenetic position","score":0.8889999985694885},{"id":"https://openalex.org/keywords/polyphyly","display_name":"polyphyly","score":0.746999979019165},{"id":"https://openalex.org/keywords/taxonomic-position","display_name":"taxonomic position","score":0.7720000147819519},{"id":"https://openalex.org/keywords/tibetan-plateau","display_name":"Tibetan Plateau","score":0.9120000004768372}],"concepts":[{"id":"https://openalex.org/C2778229473","wikidata":"https://www.wikidata.org/wiki/Q7223832","display_name":"Fagopyrum","level":2,"score":0.9121359586715698},{"id":"https://openalex.org/C2781136998","wikidata":"https://www.wikidata.org/wiki/Q156117","display_name":"Polygonaceae","level":2,"score":0.8963016867637634},{"id":"https://openalex.org/C48050816","wikidata":"https://www.wikidata.org/wiki/Q3182853","display_name":"Chloroplast DNA","level":4,"score":0.7538837790489197},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7336669564247131},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.7123295068740845},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6393783688545227},{"id":"https://openalex.org/C162100973","wikidata":"https://www.wikidata.org/wiki/Q217743","display_name":"Polyphyly","level":5,"score":0.4652918577194214},{"id":"https://openalex.org/C2779121571","wikidata":"https://www.wikidata.org/wiki/Q133311","display_name":"Tribe","level":2,"score":0.42655089497566223},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.16062304377555847},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11184719204902649},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07246848940849304},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1016/j.pld.2020.10.001","doi":"https://doi.org/10.1016/j.pld.2020.10.001","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.pld.2020.10.001","pdf_url":"https://www.sciencedirect.com/science/article/pii/S2468265920301074/pdf","source":{"id":"https://openalex.org/S123216674","display_name":"Acta Botanica Yunnanica","issn_l":"0253-2700","issn":["0253-2700","2095-0845","2096-2703","2468-2659"],"is_oa":true,"is_in_doaj":true,"is_core":false,"listed_in":["doaj","dongbi-b","oarl","poland-20","russia-white-list-1"],"host_organization":"https://openalex.org/P4310319982","host_organization_name":"Science Press","host_organization_lineage":["https://openalex.org/P4310319982"],"host_organization_lineage_names":["Science Press"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Diversity","raw_type":"journal-article"},{"id":"pmid:34195504","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34195504","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant diversity","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8233517","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC8233517/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Divers","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:995727d3f77b4df6a806880488ceabbb","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/995727d3f77b4df6a806880488ceabbb","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Plant Diversity, Vol 43, Iss 3, Pp 198-205 (2021)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1016/j.pld.2020.10.001","doi":"https://doi.org/10.1016/j.pld.2020.10.001","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.pld.2020.10.001","pdf_url":"https://www.sciencedirect.com/science/article/pii/S2468265920301074/pdf","source":{"id":"https://openalex.org/S123216674","display_name":"Acta Botanica Yunnanica","issn_l":"0253-2700","issn":["0253-2700","2095-0845","2096-2703","2468-2659"],"is_oa":true,"is_in_doaj":true,"is_core":false,"listed_in":["doaj","dongbi-b","oarl","poland-20","russia-white-list-1"],"host_organization":"https://openalex.org/P4310319982","host_organization_name":"Science Press","host_organization_lineage":["https://openalex.org/P4310319982"],"host_organization_lineage_names":["Science Press"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Diversity","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G7603355081","display_name":null,"funder_award_id":"31590821","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3094180751.pdf","grobid_xml":"https://content.openalex.org/works/W3094180751.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W111387130","https://openalex.org/W126886948","https://openalex.org/W1525248952","https://openalex.org/W1556494981","https://openalex.org/W1780710092","https://openalex.org/W1964765050","https://openalex.org/W1978254132","https://openalex.org/W1983903377","https://openalex.org/W2005077984","https://openalex.org/W2009059774","https://openalex.org/W2027448315","https://openalex.org/W2049584642","https://openalex.org/W2049652180","https://openalex.org/W2058580494","https://openalex.org/W2085874544","https://openalex.org/W2097678408","https://openalex.org/W2103441770","https://openalex.org/W2103993113","https://openalex.org/W2108234281","https://openalex.org/W2120611093","https://openalex.org/W2128880918","https://openalex.org/W2138213161","https://openalex.org/W2141052558","https://openalex.org/W2141913814","https://openalex.org/W2160378127","https://openalex.org/W2181083343","https://openalex.org/W2185638543","https://openalex.org/W2263291192","https://openalex.org/W2311203695","https://openalex.org/W2515723772","https://openalex.org/W2520597970","https://openalex.org/W2535995078","https://openalex.org/W2588627366","https://openalex.org/W2738486585","https://openalex.org/W2766763339","https://openalex.org/W2795036463","https://openalex.org/W2883197076","https://openalex.org/W2885370511","https://openalex.org/W2891041935","https://openalex.org/W2898270358","https://openalex.org/W2908485581","https://openalex.org/W2983817879","https://openalex.org/W2996148225","https://openalex.org/W2999798276","https://openalex.org/W3101744669","https://openalex.org/W4211087191","https://openalex.org/W4255659575","https://openalex.org/W4285719527","https://openalex.org/W6769457139","https://openalex.org/W7029609884"],"related_works":["https://openalex.org/W4214932801","https://openalex.org/W4285388915","https://openalex.org/W4322494233","https://openalex.org/W6957970446","https://openalex.org/W6977640262","https://openalex.org/W4366820624","https://openalex.org/W2891392630","https://openalex.org/W4414114240","https://openalex.org/W2069759291","https://openalex.org/W2089619514"],"abstract_inverted_index":{"The":[0],"phylogenetic":[1,53],"position":[2,54],"of":[3,23,40,55,67,93,102,130,156,159,177,197],"the":[4,20,24,35,52,73,97,140,186,198,209],"monotypic":[5],"woody":[6,21,195,210,218],"Parapteropyrum":[7,11,56,76,131,184,211],"(Polygonaceae)":[8],"remains":[9],"controversial.":[10],"has":[12],"been":[13],"thought":[14],"to":[15,19,50,64,91,170,217],"be":[16,223],"closely":[17],"related":[18,216],"genera":[22,196,219],"tribe":[25,41,74],"Atraphaxideae,":[26],"although":[27],"some":[28],"evidence":[29,207],"indicates":[30],"that":[31,193,208],"it":[32],"nests":[33],"within":[34,185],"herbal":[36],"buckwheat":[37],"genus":[38,187],"Fagopyrum":[39,227,229],"Polygoneae.":[42],"In":[43],"this":[44],"study,":[45],"we":[46],"used":[47,63],"plastome":[48,110,157,179],"data":[49,180],"determine":[51],"(Fagopyrum)":[57,77,132],"tibeticum.":[58,230],"Different":[59],"reference":[60,119],"species":[61,69,95],"were":[62,87,104],"assemble":[65],"plastomes":[66,86,92,120],"three":[68,178],"currently":[70],"placed":[71,225],"in":[72,166],"Ataphaxideae:":[75],"tibeticum,":[78,133,212],"Atraphaxis":[79],"bracteata":[80,135],"and":[81,89,112,136,149,152,174],"Calligonum":[82],"ebinuricum.":[83],"Once":[84],"assembled,":[85],"characterized":[88],"compared":[90],"12":[94],"across":[96],"family":[98,199],"Polygonaceae.":[99],"Phylogenetic":[100],"analyses":[101,176,191],"Polygonaceae":[103,200],"performed":[105],"using":[106,117],"whole":[107],"plastome,":[108],"all":[109],"genes,":[111],"single-copy":[113],"genes.":[114],"Plastomes":[115,129],"assembled":[116],"different":[118],"did":[121],"not":[122],"differ;":[123],"however,":[124],"annotations":[125],"showed":[126],"small":[127],"variation.":[128],"A.":[134],"C.":[137],"ebinuricum":[138],"have":[139],"typical":[141],"quadripartite":[142],"structure":[143],"with":[144],"lengths":[145],"between":[146],"159,265":[147],"bp":[148],"164,270":[150],"bp,":[151],"a":[153],"total":[154],"number":[155,167],"genes":[158],"about":[160],"130.":[161],"Plastome":[162],"microsatellites":[163],"(SSR)":[164],"ranged":[165],"from":[168],"48":[169],"77.":[171],"Maximum":[172],"Likelihood":[173],"Bayesian":[175],"sets":[181],"consistently":[182],"nested":[183],"Fagopyrum.":[188],"Furthermore,":[189],"our":[190],"indicated":[192],"sampled":[194,220],"are":[201],"polyphyletic.":[202],"Our":[203],"study":[204],"provides":[205],"strong":[206],"which":[213],"is":[214],"distantly":[215],"here,":[221],"should":[222],"taxonomically":[224],"under":[226],"as":[228]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2020-10-29T00:00:00"}