{"id":"https://openalex.org/W3082019542","doi":null,"title":"Docking of RNA Hairpin on Protein Using a Fragment-Based Method","display_name":"Docking of RNA Hairpin on Protein Using a Fragment-Based Method","publication_year":2020,"publication_date":"2020-06-30","ids":{"openalex":"https://openalex.org/W3082019542","mag":"3082019542"},"language":"en","primary_location":{"id":"mag:3082019542","doi":null,"is_oa":true,"landing_page_url":"https://hal.archives-ouvertes.fr/hal-02927185","pdf_url":null,"source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"HAL (Le Centre pour la Communication Scientifique Directe)","raw_type":null},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hal.archives-ouvertes.fr/hal-02927185","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"M. H. Antoine","orcid":"https://orcid.org/0000-0002-8316-5518","observed_orcids":["https://orcid.org/0000-0002-8316-5518"]},"institutions":[{"id":"https://openalex.org/I4405259729","display_name":"CAPSID: Computational Algorithms for Protein Structures and Interactions","ror":"https://ror.org/02m9pkf41","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I277688954","https://openalex.org/I4210107720","https://openalex.org/I4210121838","https://openalex.org/I4210127166","https://openalex.org/I4210159245","https://openalex.org/I4405259729","https://openalex.org/I90183372"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"M. H. Antoine","raw_affiliation_strings":["Computational Algorithms for Protein Structures and Interactions"],"raw_orcid":"https://orcid.org/0000-0002-8316-5518","affiliations":[{"raw_affiliation_string":"Computational Algorithms for Protein Structures and Interactions","institution_ids":["https://openalex.org/I4405259729"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082397963","display_name":"Rohit Roy","orcid":"https://orcid.org/0000-0001-8569-3245","observed_orcids":["https://orcid.org/0000-0001-8569-3245"]},"institutions":[{"id":"https://openalex.org/I4405259729","display_name":"CAPSID: Computational Algorithms for Protein Structures and Interactions","ror":"https://ror.org/02m9pkf41","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I277688954","https://openalex.org/I4210107720","https://openalex.org/I4210121838","https://openalex.org/I4210127166","https://openalex.org/I4210159245","https://openalex.org/I4405259729","https://openalex.org/I90183372"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Rohit Roy","raw_affiliation_strings":["Computational Algorithms for Protein Structures and Interactions"],"raw_orcid":"https://orcid.org/0000-0001-8569-3245","affiliations":[{"raw_affiliation_string":"Computational Algorithms for Protein Structures and Interactions","institution_ids":["https://openalex.org/I4405259729"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048932953","display_name":"Yann Guermeur","orcid":"https://orcid.org/0000-0003-2915-4655","observed_orcids":["https://orcid.org/0000-0003-2915-4655"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yann Guermeur","raw_affiliation_strings":["Machine Learning and Computational Biology"],"raw_orcid":"https://orcid.org/0000-0003-2915-4655","affiliations":[{"raw_affiliation_string":"Machine Learning and Computational Biology","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067298493","display_name":"Isaure Chauvot de Beauch\u00eane","orcid":"https://orcid.org/0000-0002-7035-3042","observed_orcids":["https://orcid.org/0000-0002-7035-3042"]},"institutions":[{"id":"https://openalex.org/I4405259729","display_name":"CAPSID: Computational Algorithms for Protein Structures and Interactions","ror":"https://ror.org/02m9pkf41","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I277688954","https://openalex.org/I4210107720","https://openalex.org/I4210121838","https://openalex.org/I4210127166","https://openalex.org/I4210159245","https://openalex.org/I4405259729","https://openalex.org/I90183372"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Isaure Chauvot de Beauch\u00eane","raw_affiliation_strings":["Computational Algorithms for Protein Structures and Interactions"],"raw_orcid":"https://orcid.org/0000-0002-7035-3042","affiliations":[{"raw_affiliation_string":"Computational Algorithms for Protein Structures and Interactions","institution_ids":["https://openalex.org/I4405259729"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.7470999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.7470999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.1785999983549118,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.02160000056028366,"subfield":{"id":"https://openalex.org/subfields/3002","display_name":"Drug Discovery"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-hairpin","display_name":"RNA hairpin","score":0.9079999923706055},{"id":"https://openalex.org/keywords/fragment-based-docking","display_name":"fragment-based docking","score":0.7879999876022339},{"id":"https://openalex.org/keywords/rna-secondary-structure","display_name":"RNA secondary structure","score":0.9620000123977661},{"id":"https://openalex.org/keywords/geometric-features","display_name":"geometric features","score":0.6159999966621399}],"concepts":[{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.7988944053649902},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.7303557991981506},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5705741047859192},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5583658218383789},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4954184293746948},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3459114134311676},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3143226206302643},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2818538248538971},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19362130761146545},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11246511340141296},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"mag:3082019542","doi":null,"is_oa":true,"landing_page_url":"https://hal.archives-ouvertes.fr/hal-02927185","pdf_url":null,"source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"HAL (Le Centre pour la Communication Scientifique Directe)","raw_type":null},{"id":"pmh:oai:HAL:hal-02927185v1","doi":null,"is_oa":true,"landing_page_url":"https://hal.science/hal-02927185","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4405252976","host_organization_name":"Centre pour la Communication Scientifique Directe","host_organization_lineage":["https://openalex.org/I4405252976"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"JOBIM 2020 - Journ\u00e9es Ouvertes en Biologie, Informatique et Math\u00e9matiques, Jun 2020, Montpellier, France","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"mag:3082019542","doi":null,"is_oa":true,"landing_page_url":"https://hal.archives-ouvertes.fr/hal-02927185","pdf_url":null,"source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"HAL (Le Centre pour la Communication Scientifique Directe)","raw_type":null},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2276563171","https://openalex.org/W4294067432","https://openalex.org/W4285822884","https://openalex.org/W7010044077","https://openalex.org/W4392486327","https://openalex.org/W2342972270","https://openalex.org/W7011588489","https://openalex.org/W4393200185","https://openalex.org/W4388962731","https://openalex.org/W4392278682"],"abstract_inverted_index":{"We":[0],"introduce":[1],"an":[2],"extension":[3],"of":[4,28,31,52],"our":[5],"fragment-based":[6,55],"method":[7],"for":[8],"ssRNA-protein":[9],"docking":[10],"as":[11],"it":[12,40,46],"is":[13,21,41],"still":[14],"a":[15],"challenging":[16],"difficulty":[17],"in":[18],"docking.":[19],"It":[20],"dedicated":[22],"to":[23,48],"hairpins":[24],"and":[25,43],"makes":[26],"use":[27],"geometrical":[29],"features":[30],"this":[32],"secondary":[33],"structure.":[34],"An":[35],"initial":[36],"evaluation":[37],"establishes":[38],"that":[39],"promising":[42],"could":[44],"make":[45],"possible":[47],"overcome":[49],"the":[50,53],"limitations":[51],"state-of-the-art":[54],"methods.":[56]},"counts_by_year":[],"updated_date":"2026-11-08T12:12:28.789561","created_date":"2020-09-08T00:00:00"}