{"id":"https://openalex.org/W3036384697","doi":"https://doi.org/10.1371/journal.ppat.1008608","title":"Transmission modes affect the population structure of potato virus Y in potato","display_name":"Transmission modes affect the population structure of potato virus Y in potato","publication_year":2020,"publication_date":"2020-06-23","ids":{"openalex":"https://openalex.org/W3036384697","doi":"https://doi.org/10.1371/journal.ppat.1008608","mag":"3036384697","pmid":"https://pubmed.ncbi.nlm.nih.gov/32574227","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/7347233"},"language":"en","primary_location":{"id":"doi:10.1371/journal.ppat.1008608","doi":"https://doi.org/10.1371/journal.ppat.1008608","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.ppat.1008608","pdf_url":"https://journals.plos.org/plospathogens/article/file?id=10.1371/journal.ppat.1008608&type=printable","source":{"id":"https://openalex.org/S2004986","display_name":"PLoS Pathogens","issn_l":"1553-7366","issn":["1553-7366","1553-7374"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Pathogens","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/plospathogens/article/file?id=10.1371/journal.ppat.1008608&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050757437","display_name":"Washington da Silva","orcid":"https://orcid.org/0000-0001-5558-286X","observed_orcids":["https://orcid.org/0000-0001-5558-286X"]},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I2799945547","display_name":"Connecticut Agricultural Experiment Station","ror":"https://ror.org/02t7c5797","country_code":"US","type":"government","lineage":["https://openalex.org/I2799945547"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Washington da Silva","raw_affiliation_strings":["Department of Pathology and Ecology, The Connecticut Agricultural Experiment Station, New Haven, Connecticut, United States of America","School of Integrative Plant Science, Plant Pathology and Plant-Microbe Biology Section, Cornell University, Ithaca, New York, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-5558-286X","affiliations":[{"raw_affiliation_string":"Department of Pathology and Ecology, The Connecticut Agricultural Experiment Station, New Haven, Connecticut, United States of America","institution_ids":["https://openalex.org/I2799945547"]},{"raw_affiliation_string":"School of Integrative Plant Science, Plant Pathology and Plant-Microbe Biology Section, Cornell University, Ithaca, New York, United States of America","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091483317","display_name":"Denis Kutnjak","orcid":"https://orcid.org/0000-0002-5327-0587","observed_orcids":["https://orcid.org/0000-0002-5327-0587"]},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]},{"id":"https://openalex.org/I4210140619","display_name":"National Institute of Biology","ror":"https://ror.org/03s5t0r17","country_code":"SI","type":"facility","lineage":["https://openalex.org/I4210140619"]},{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]}],"countries":["ES","SI"],"is_corresponding":true,"raw_author_name":"Denis Kutnjak","raw_affiliation_strings":["Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia","Instituto de Biolog\u00eda Integrativa de Sistemas (I2SysBio), CSIC-Universitat de Val\u00e8ncia, Paterna, Val\u00e8ncia, Spain"],"raw_orcid":"https://orcid.org/0000-0002-5327-0587","affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I4210140619"]},{"raw_affiliation_string":"Instituto de Biolog\u00eda Integrativa de Sistemas (I2SysBio), CSIC-Universitat de Val\u00e8ncia, Paterna, Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I16097986","https://openalex.org/I4210152685"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101757895","display_name":"Yi Xu","orcid":"https://orcid.org/0000-0002-1913-4530","observed_orcids":["https://orcid.org/0000-0002-1913-4530"]},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]},{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4405258788","display_name":"Boyce Thompson Institute","ror":"https://ror.org/016tr2327","country_code":"US","type":"facility","lineage":["https://openalex.org/I4405258788"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Yi Xu","raw_affiliation_strings":["Boyce Thompson Institute, Cornell University, Ithaca, New York, United States of America","Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China","Emerging Pests & Pathogens Research Unit, USDA, ARS, Ithaca, New York, United States of America","School of Integrative Plant Science, Plant Pathology and Plant-Microbe Biology Section, Cornell University, Ithaca, New York, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-1913-4530","affiliations":[{"raw_affiliation_string":"Boyce Thompson Institute, Cornell University, Ithaca, New York, United States of America","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4405258788"]},{"raw_affiliation_string":"Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Emerging Pests & Pathogens Research Unit, USDA, ARS, Ithaca, New York, United States of America","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"raw_affiliation_string":"School of Integrative Plant Science, Plant Pathology and Plant-Microbe Biology Section, Cornell University, Ithaca, New York, United States of America","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102782364","display_name":"Yimin Xu","orcid":"https://orcid.org/0000-0003-2488-4405","observed_orcids":["https://orcid.org/0000-0003-2488-4405"]},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]},{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4405258788","display_name":"Boyce Thompson Institute","ror":"https://ror.org/016tr2327","country_code":"US","type":"facility","lineage":["https://openalex.org/I4405258788"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Yimin Xu","raw_affiliation_strings":["Boyce Thompson Institute, Cornell University, Ithaca, New York, United States of America","Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China","Emerging Pests & Pathogens Research Unit, USDA, ARS, Ithaca, New York, United States of America","School of Integrative Plant Science, Plant Pathology and Plant-Microbe Biology Section, Cornell University, Ithaca, New York, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boyce Thompson Institute, Cornell University, Ithaca, New York, United States of America","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4405258788"]},{"raw_affiliation_string":"Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Emerging Pests & Pathogens Research Unit, USDA, ARS, Ithaca, New York, United States of America","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"raw_affiliation_string":"School of Integrative Plant Science, Plant Pathology and Plant-Microbe Biology Section, Cornell University, Ithaca, New York, United States of America","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077046811","display_name":"James J. Giovannoni","orcid":"https://orcid.org/0000-0002-0972-2515","observed_orcids":["https://orcid.org/0000-0002-0972-2515"]},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4405258788","display_name":"Boyce Thompson Institute","ror":"https://ror.org/016tr2327","country_code":"US","type":"facility","lineage":["https://openalex.org/I4405258788"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Giovannoni","raw_affiliation_strings":["Boyce Thompson Institute, Cornell University, Ithaca, New York, United States of America","Emerging Pests & Pathogens Research Unit, USDA, ARS, Ithaca, New York, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boyce Thompson Institute, Cornell University, Ithaca, New York, United States of America","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4405258788"]},{"raw_affiliation_string":"Emerging Pests & Pathogens Research Unit, USDA, ARS, Ithaca, New York, United States of America","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001395924","display_name":"Santiago F. Elena","orcid":"https://orcid.org/0000-0001-8249-5593","observed_orcids":["https://orcid.org/0000-0001-8249-5593"]},"institutions":[{"id":"https://openalex.org/I1308548392","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1308548392"]},{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]},{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]}],"countries":["ES","US"],"is_corresponding":false,"raw_author_name":"Santiago F. Elena","raw_affiliation_strings":["Instituto de Biolog\u00eda Integrativa de Sistemas (I2SysBio), CSIC-Universitat de Val\u00e8ncia, Paterna, Val\u00e8ncia, Spain","The Santa Fe Institute, Santa Fe, New Mexico, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-8249-5593","affiliations":[{"raw_affiliation_string":"Instituto de Biolog\u00eda Integrativa de Sistemas (I2SysBio), CSIC-Universitat de Val\u00e8ncia, Paterna, Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I16097986","https://openalex.org/I4210152685"]},{"raw_affiliation_string":"The Santa Fe Institute, Santa Fe, New Mexico, United States of America","institution_ids":["https://openalex.org/I1308548392"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091733369","display_name":"Stewart M. Gray","orcid":"https://orcid.org/0000-0002-8402-1962","observed_orcids":["https://orcid.org/0000-0002-8402-1962"]},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stewart Gray","raw_affiliation_strings":["Emerging Pests & Pathogens Research Unit, USDA, ARS, Ithaca, New York, United States of America","School of Integrative Plant Science, Plant Pathology and Plant-Microbe Biology Section, Cornell University, Ithaca, New York, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-8402-1962","affiliations":[{"raw_affiliation_string":"Emerging Pests & Pathogens Research Unit, USDA, ARS, Ithaca, New York, United States of America","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"raw_affiliation_string":"School of Integrative Plant Science, Plant Pathology and Plant-Microbe Biology Section, Cornell University, Ithaca, New York, United States of America","institution_ids":["https://openalex.org/I205783295"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5050757437","https://openalex.org/A5091483317"],"corresponding_institution_ids":["https://openalex.org/I16097986","https://openalex.org/I205783295","https://openalex.org/I2799945547","https://openalex.org/I4210140619","https://openalex.org/I4210152685"],"apc_list":{"value":2500,"currency":"USD","value_usd":2500},"apc_paid":{"value":2500,"currency":"USD","value_usd":2500},"fwci":4.5942,"has_fulltext":true,"cited_by_count":62,"citation_normalized_percentile":{"value":0.95060299,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"16","issue":"6","first_page":"e1008608","last_page":"e1008608"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.014100000262260437,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13220","display_name":"Plant and Fungal Interactions Research","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/potato-virus-y","display_name":"potato virus Y","score":0.9649999737739563},{"id":"https://openalex.org/keywords/aphid-transmission","display_name":"aphid transmission","score":0.9200000166893005},{"id":"https://openalex.org/keywords/mechanical-transmission","display_name":"mechanical transmission","score":0.9950000047683716},{"id":"https://openalex.org/keywords/genetic-diversity","display_name":"genetic diversity","score":0.4690000116825104},{"id":"https://openalex.org/keywords/population-bottleneck","display_name":"population bottleneck","score":0.734000027179718},{"id":"https://openalex.org/keywords/rna-virus-evolution","display_name":"RNA virus evolution","score":0.7179999947547913},{"id":"https://openalex.org/keywords/potato","display_name":"potato","score":0.6700000166893005}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8458844423294067},{"id":"https://openalex.org/C761482","wikidata":"https://www.wikidata.org/wiki/Q118093","display_name":"Transmission (telecommunications)","level":2,"score":0.7312611937522888},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.6661432981491089},{"id":"https://openalex.org/C2780504191","wikidata":"https://www.wikidata.org/wiki/Q29007110","display_name":"Potato virus Y","level":4,"score":0.640281617641449},{"id":"https://openalex.org/C2780263730","wikidata":"https://www.wikidata.org/wiki/Q4254955","display_name":"Horizontal transmission","level":3,"score":0.6097202301025391},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.5815221667289734},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5754631161689758},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.5227013826370239},{"id":"https://openalex.org/C2775976403","wikidata":"https://www.wikidata.org/wiki/Q183350","display_name":"Aphid","level":2,"score":0.5018250942230225},{"id":"https://openalex.org/C8769409","wikidata":"https://www.wikidata.org/wiki/Q2066554","display_name":"Viral evolution","level":4,"score":0.48532527685165405},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4434794485569},{"id":"https://openalex.org/C109110057","wikidata":"https://www.wikidata.org/wiki/Q1495434","display_name":"Plant virus","level":3,"score":0.35313862562179565},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.1725834310054779},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.16426703333854675},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15821486711502075},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D011198","descriptor_name":"Solanum tuberosum","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011198","descriptor_name":"Solanum tuberosum","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D017800","descriptor_name":"Potyvirus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D017800","descriptor_name":"Potyvirus","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":true},{"descriptor_ui":"D018515","descriptor_name":"Plant Leaves","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018515","descriptor_name":"Plant Leaves","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D035281","descriptor_name":"Plant Tubers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D035281","descriptor_name":"Plant Tubers","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.ppat.1008608","doi":"https://doi.org/10.1371/journal.ppat.1008608","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.ppat.1008608","pdf_url":"https://journals.plos.org/plospathogens/article/file?id=10.1371/journal.ppat.1008608&type=printable","source":{"id":"https://openalex.org/S2004986","display_name":"PLoS Pathogens","issn_l":"1553-7366","issn":["1553-7366","1553-7374"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Pathogens","raw_type":"journal-article"},{"id":"pmid:32574227","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32574227","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS pathogens","raw_type":"Journal Article"},{"id":"pmh:oai:dirros.openscience.si:IzpisGradiva.php?id=19600","doi":null,"is_oa":true,"landing_page_url":"https://dirros.openscience.si/IzpisGradiva.php?id=19600","pdf_url":null,"source":{"id":"https://openalex.org/S4377196363","display_name":"DiRROS repository (University of Maribor)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I37696226","host_organization_name":"University of Maribor","host_organization_lineage":["https://openalex.org/I37696226"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS pathogens, vol. 16, no. 6, pp. e1008608,1-23, 2020.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7347233","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC7347233/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Pathog","raw_type":"Text"},{"id":"pmh:oai:digital.csic.es:10261/247376","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/247376","pdf_url":"http://hdl.handle.net/10261/247376","source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"pmh:oai:doaj.org/article:b6a8e522138b44528d6d64f8e9ab2089","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/b6a8e522138b44528d6d64f8e9ab2089","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Pathogens, Vol 16, Iss 6, p e1008608 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.ppat.1008608","doi":"https://doi.org/10.1371/journal.ppat.1008608","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.ppat.1008608","pdf_url":"https://journals.plos.org/plospathogens/article/file?id=10.1371/journal.ppat.1008608&type=printable","source":{"id":"https://openalex.org/S2004986","display_name":"PLoS Pathogens","issn_l":"1553-7366","issn":["1553-7366","1553-7374"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Pathogens","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.6735000014305115}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1254062007","display_name":null,"funder_award_id":"#1017940","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G2061727425","display_name":null,"funder_award_id":"2009-51181-05894","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G3340237872","display_name":null,"funder_award_id":"2014-51181-22373","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G3593182380","display_name":null,"funder_award_id":"2014-51181-22373","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G3672749825","display_name":null,"funder_award_id":"scholarship 2014/2015","funder_id":"https://openalex.org/F5642082230","funder_display_name":"National Potato Council"},{"id":"https://openalex.org/G3875216336","display_name":null,"funder_award_id":"PROMETEOII/2014/012","funder_id":"https://openalex.org/F4320321864","funder_display_name":"Generalitat Valenciana"},{"id":"https://openalex.org/G4057507972","display_name":null,"funder_award_id":"1017940","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G5265401474","display_name":"The role of epigenetic imprinting in temporally separated multiple virus infections in plants","funder_award_id":"Z1-9158","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G5956494030","display_name":"Environmental and applied virology: viruses, friends and foes","funder_award_id":"P4-0407","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G5971369252","display_name":null,"funder_award_id":"2009-51181-05894","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G6087320396","display_name":"Spatial epidemiology of a vector-borne plant virus: interactions between landscape, hosts, vectors and an emerging disease of potatoes","funder_award_id":"BB/L011840/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G621258582","display_name":null,"funder_award_id":"2014/2015","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6690284587","display_name":null,"funder_award_id":"BFU2015-65037-P","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8060264394","display_name":null,"funder_award_id":"2009-51181","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320309644","display_name":"State University of New York","ror":"https://ror.org/01q1z8k08"},{"id":"https://openalex.org/F4320321864","display_name":"Generalitat Valenciana","ror":"https://ror.org/0097mvx21"},{"id":"https://openalex.org/F4320322554","display_name":"Javna Agencija za Raziskovalno Dejavnost RS","ror":"https://ror.org/059bp8k51"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F5642082230","display_name":"National Potato Council","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3036384697.pdf","grobid_xml":"https://content.openalex.org/works/W3036384697.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W572223481","https://openalex.org/W1661927664","https://openalex.org/W1985914371","https://openalex.org/W1991489814","https://openalex.org/W2001304778","https://openalex.org/W2003574450","https://openalex.org/W2004413619","https://openalex.org/W2017774599","https://openalex.org/W2023360006","https://openalex.org/W2026721694","https://openalex.org/W2029346879","https://openalex.org/W2032028701","https://openalex.org/W2070161288","https://openalex.org/W2071158616","https://openalex.org/W2072832871","https://openalex.org/W2073918065","https://openalex.org/W2080929480","https://openalex.org/W2087073101","https://openalex.org/W2096286859","https://openalex.org/W2096331444","https://openalex.org/W2101929561","https://openalex.org/W2114852044","https://openalex.org/W2120567086","https://openalex.org/W2127452103","https://openalex.org/W2150034939","https://openalex.org/W2152036340","https://openalex.org/W2156277849","https://openalex.org/W2166526207","https://openalex.org/W2173759386","https://openalex.org/W2218897476","https://openalex.org/W2263034965","https://openalex.org/W2278623573","https://openalex.org/W2302658801","https://openalex.org/W2325064908","https://openalex.org/W2396452946","https://openalex.org/W2514577743","https://openalex.org/W2523104317","https://openalex.org/W2524622036","https://openalex.org/W2565695136","https://openalex.org/W2582743722","https://openalex.org/W2624000193","https://openalex.org/W2728879533","https://openalex.org/W2743966049","https://openalex.org/W2744386010","https://openalex.org/W2770536632","https://openalex.org/W2891059565","https://openalex.org/W2953330945","https://openalex.org/W3004151993","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2743966049","https://openalex.org/W2062035639","https://openalex.org/W4300889557","https://openalex.org/W4387259491","https://openalex.org/W2001304778","https://openalex.org/W2713616304","https://openalex.org/W145376113","https://openalex.org/W2565695136","https://openalex.org/W3133947834","https://openalex.org/W2141411702"],"abstract_inverted_index":{"Transmission":[0],"is":[1,60],"a":[2,6,34,102,246],"crucial":[3],"part":[4],"of":[5,33,66,71,114,120,140,170,214,223,232,249,257],"viral":[7,96,141,171],"life":[8],"cycle":[9],"and":[10,31,64,118,130,132,175,190,196,229,260,288],"transmission":[11,25,86,91,136,147,178,220,236,251,268,279],"mode":[12,26],"can":[13,27,269],"have":[14,100],"an":[15,61],"important":[16],"impact":[17,248],"on":[18,253],"virus":[19,49,57,63,215,225,250,258,271,285],"biology.":[20],"It":[21,73],"was":[22],"demonstrated":[23],"that":[24,79],"influence":[28],"the":[29,44,54,67,94,108,111,154,163,212,218,224,227,230,254,274],"virulence":[30],"evolution":[32],"virus;":[35],"however,":[36],"few":[37],"empirical":[38],"data":[39,264],"are":[40,80,281],"available":[41],"to":[42,106,201,239,283],"describe":[43],"direct":[45],"underlying":[46],"changes":[47,109],"in":[48,110,167,183,186,273],"population":[50,97,286],"structure":[51,113,213,287],"dynamics":[52],"within":[53,217,226],"host.":[55],"Potato":[56],"Y":[58],"(PVY)":[59],"RNA":[62],"one":[65],"most":[68,164],"damaging":[69],"pathogens":[70],"potato.":[72],"comprises":[74],"several":[75],"genetically":[76],"variable":[77],"strains":[78,123],"transmitted":[81,150,159,192],"between":[82,173],"plants":[83],"via":[84],"different":[85,278],"modes.":[87,137],"To":[88,209],"investigate":[89],"how":[90,267],"modes":[92,252,280],"affect":[93,284],"within-plant":[95,255],"structure,":[98],"we":[99],"used":[101],"deep":[103],"sequencing":[104],"approach":[105],"examine":[107],"genetic":[112,204],"populations":[115,142,172,216,259],"(in":[116],"leaves":[117,174,187],"tubers)":[119,135],"three":[121],"PVY":[122],"after":[124,235],"successive":[125],"passages":[126],"by":[127,146,151,160],"horizontal":[128],"(aphid":[129],"mechanical)":[131],"vertical":[133],"(via":[134],"Nucleotide":[138],"diversities":[139,169,182],"were":[143,153,162,177,199],"significantly":[144],"influenced":[145],"modes;":[148],"lineages":[149,158],"aphids":[152],"least":[155],"diverse,":[156],"whereas":[157],"tubers":[161,176,184],"diverse.":[165],"Differences":[166],"nucleotide":[168],"mode-dependent,":[179],"with":[180],"higher":[181],"than":[185,206],"for":[188,265],"aphid":[189,195],"mechanically":[191],"lineages.":[193],"Furthermore,":[194],"tuber":[197],"transmissions":[198],"shown":[200],"impose":[202],"stronger":[203],"bottlenecks":[205],"mechanical":[207],"transmission.":[208],"better":[210],"understand":[211],"host,":[219,228],"mode,":[221],"movement":[222],"number":[231],"replication":[233],"cycles":[234],"event":[237],"need":[238],"be":[240],"considered.":[241],"Collectively,":[242],"our":[243],"results":[244],"suggest":[245],"significant":[247],"diversity":[256,272],"provide":[261],"quantitative":[262],"fundamental":[263],"understanding":[266],"shape":[270],"natural":[275],"ecosystems,":[276],"where":[277],"expected":[282],"consequently":[289],"its":[290],"evolution.":[291]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":1}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2020-06-25T00:00:00"}