{"id":"https://openalex.org/W3029508591","doi":"https://doi.org/10.1002/9781119312994.apr0615","title":"Nucleus\u2010to\u2010Plastid Phytochrome Signalling in Controlling Chloroplast Biogenesis","display_name":"Nucleus\u2010to\u2010Plastid Phytochrome Signalling in Controlling Chloroplast Biogenesis","publication_year":2020,"publication_date":"2020-05-24","ids":{"openalex":"https://openalex.org/W3029508591","doi":"https://doi.org/10.1002/9781119312994.apr0615","mag":"3029508591"},"language":"en","primary_location":{"id":"doi:10.1002/9781119312994.apr0615","doi":"https://doi.org/10.1002/9781119312994.apr0615","is_oa":false,"landing_page_url":"https://doi.org/10.1002/9781119312994.apr0615","pdf_url":null,"source":{"id":"https://openalex.org/S4363604446","display_name":"Annual Plant Reviews online","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual Plant Reviews online","raw_type":"other"},"volume":{"id":"https://openalex.org/W2607190332","display_name":"Annual Plant Reviews online"},"type":"other","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024059937","display_name":"Chan Yul Yoo","orcid":"https://orcid.org/0000-0001-6159-7443","observed_orcids":["https://orcid.org/0000-0001-6159-7443"]},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]},{"id":"https://openalex.org/I4405278674","display_name":"Institute for Integrative Genome Biology","ror":"https://ror.org/00cpdm633","country_code":"US","type":"facility","lineage":["https://openalex.org/I103635307","https://openalex.org/I4405278674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chan Yul Yoo","raw_affiliation_strings":["Department of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA, USA","institution_ids":["https://openalex.org/I103635307","https://openalex.org/I4405278674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073731866","display_name":"Soeun Han","orcid":"https://orcid.org/0000-0001-5570-2307","observed_orcids":["https://orcid.org/0000-0001-5570-2307"]},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]},{"id":"https://openalex.org/I4405278674","display_name":"Institute for Integrative Genome Biology","ror":"https://ror.org/00cpdm633","country_code":"US","type":"facility","lineage":["https://openalex.org/I103635307","https://openalex.org/I4405278674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Soeun Han","raw_affiliation_strings":["Department of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA, USA","institution_ids":["https://openalex.org/I103635307","https://openalex.org/I4405278674"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029276357","display_name":"Meng Chen","orcid":"https://orcid.org/0000-0003-0351-5897","observed_orcids":["https://orcid.org/0000-0003-0351-5897"]},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]},{"id":"https://openalex.org/I4405278674","display_name":"Institute for Integrative Genome Biology","ror":"https://ror.org/00cpdm633","country_code":"US","type":"facility","lineage":["https://openalex.org/I103635307","https://openalex.org/I4405278674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meng Chen","raw_affiliation_strings":["Department of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA, USA","institution_ids":["https://openalex.org/I103635307","https://openalex.org/I4405278674"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"251","last_page":"280"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11268","display_name":"Light effects on plants","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11268","display_name":"Light effects on plants","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.015200000256299973,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phytochrome","display_name":"phytochrome","score":0.8420000076293945},{"id":"https://openalex.org/keywords/chloroplast-biogenesis","display_name":"chloroplast biogenesis","score":0.9200000166893005},{"id":"https://openalex.org/keywords/plastid-transcription","display_name":"plastid transcription","score":0.9490000009536743},{"id":"https://openalex.org/keywords/photosynthetic-gene-expression","display_name":"photosynthetic gene expression","score":0.6309999823570251},{"id":"https://openalex.org/keywords/light-regulation","display_name":"light regulation","score":0.43700000643730164},{"id":"https://openalex.org/keywords/flowering-plants","display_name":"flowering plants","score":0.8220000267028809}],"concepts":[{"id":"https://openalex.org/C93829228","wikidata":"https://www.wikidata.org/wiki/Q165963","display_name":"Plastid","level":4,"score":0.9325827360153198},{"id":"https://openalex.org/C90180588","wikidata":"https://www.wikidata.org/wiki/Q24779306","display_name":"Phytochrome","level":3,"score":0.9210935831069946},{"id":"https://openalex.org/C69305403","wikidata":"https://www.wikidata.org/wiki/Q47263","display_name":"Chloroplast","level":3,"score":0.7115683555603027},{"id":"https://openalex.org/C131934819","wikidata":"https://www.wikidata.org/wiki/Q135390","display_name":"Biogenesis","level":3,"score":0.6780871748924255},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6742128133773804},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.5326634645462036},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2997739911079407},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.29587721824645996},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.2933849096298218},{"id":"https://openalex.org/C2986477067","wikidata":"https://www.wikidata.org/wiki/Q1210055","display_name":"Red light","level":2,"score":0.06206068396568298}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1002/9781119312994.apr0615","doi":"https://doi.org/10.1002/9781119312994.apr0615","is_oa":false,"landing_page_url":"https://doi.org/10.1002/9781119312994.apr0615","pdf_url":null,"source":{"id":"https://openalex.org/S4363604446","display_name":"Annual Plant Reviews online","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual Plant Reviews online","raw_type":"other"}],"best_oa_location":null,"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":205,"referenced_works":["https://openalex.org/W85816562","https://openalex.org/W105726557","https://openalex.org/W161128883","https://openalex.org/W1502984615","https://openalex.org/W1521745385","https://openalex.org/W1546989042","https://openalex.org/W1551393329","https://openalex.org/W1570936737","https://openalex.org/W1590268200","https://openalex.org/W1594343721","https://openalex.org/W1644224052","https://openalex.org/W1891455039","https://openalex.org/W1908991106","https://openalex.org/W1921909110","https://openalex.org/W1934152706","https://openalex.org/W1948943367","https://openalex.org/W1963670602","https://openalex.org/W1965939942","https://openalex.org/W1966808185","https://openalex.org/W1967096308","https://openalex.org/W1967551062","https://openalex.org/W1974295975","https://openalex.org/W1975081311","https://openalex.org/W1975420102","https://openalex.org/W1977726990","https://openalex.org/W1978734268","https://openalex.org/W1978875196","https://openalex.org/W1979664906","https://openalex.org/W1981171604","https://openalex.org/W1982981899","https://openalex.org/W1986240684","https://openalex.org/W1986627605","https://openalex.org/W1991883784","https://openalex.org/W1994053114","https://openalex.org/W1994744644","https://openalex.org/W2000257818","https://openalex.org/W2002267855","https://openalex.org/W2002704397","https://openalex.org/W2003425235","https://openalex.org/W2007573576","https://openalex.org/W2011265440","https://openalex.org/W2014164438","https://openalex.org/W2017718696","https://openalex.org/W2018205727","https://openalex.org/W2018399730","https://openalex.org/W2018946548","https://openalex.org/W2019783471","https://openalex.org/W2019923915","https://openalex.org/W2020025342","https://openalex.org/W2020432281","https://openalex.org/W2021609583","https://openalex.org/W2022082589","https://openalex.org/W2023779693","https://openalex.org/W2025977362","https://openalex.org/W2028337466","https://openalex.org/W2031470057","https://openalex.org/W2035222419","https://openalex.org/W2038195820","https://openalex.org/W2038657480","https://openalex.org/W2039407908","https://openalex.org/W2040667391","https://openalex.org/W2042817598","https://openalex.org/W2043343933","https://openalex.org/W2048822761","https://openalex.org/W2050004861","https://openalex.org/W2050435871","https://openalex.org/W2051105818","https://openalex.org/W2052586663","https://openalex.org/W2056008401","https://openalex.org/W2056052347","https://openalex.org/W2062947059","https://openalex.org/W2063479040","https://openalex.org/W2064506717","https://openalex.org/W2067451352","https://openalex.org/W2067775919","https://openalex.org/W2073885187","https://openalex.org/W2075014495","https://openalex.org/W2075028941","https://openalex.org/W2076277161","https://openalex.org/W2077126932","https://openalex.org/W2079863469","https://openalex.org/W2079916408","https://openalex.org/W2089333407","https://openalex.org/W2091407616","https://openalex.org/W2094111328","https://openalex.org/W2094227587","https://openalex.org/W2095288308","https://openalex.org/W2096868783","https://openalex.org/W2100260552","https://openalex.org/W2100464344","https://openalex.org/W2103748065","https://openalex.org/W2107440564","https://openalex.org/W2108407292","https://openalex.org/W2108546802","https://openalex.org/W2111586761","https://openalex.org/W2112033972","https://openalex.org/W2112811953","https://openalex.org/W2113817657","https://openalex.org/W2113951277","https://openalex.org/W2115210783","https://openalex.org/W2116114189","https://openalex.org/W2117802964","https://openalex.org/W2120210898","https://openalex.org/W2120941646","https://openalex.org/W2122027991","https://openalex.org/W2125421457","https://openalex.org/W2125618971","https://openalex.org/W2126064799","https://openalex.org/W2126986662","https://openalex.org/W2127305272","https://openalex.org/W2127802421","https://openalex.org/W2129810530","https://openalex.org/W2130662176","https://openalex.org/W2130864801","https://openalex.org/W2133685835","https://openalex.org/W2134107197","https://openalex.org/W2134738614","https://openalex.org/W2135969448","https://openalex.org/W2136059078","https://openalex.org/W2137248016","https://openalex.org/W2137418630","https://openalex.org/W2137864447","https://openalex.org/W2138692851","https://openalex.org/W2140179153","https://openalex.org/W2140512034","https://openalex.org/W2142483150","https://openalex.org/W2143045471","https://openalex.org/W2145131787","https://openalex.org/W2148076607","https://openalex.org/W2149116674","https://openalex.org/W2151825126","https://openalex.org/W2152793376","https://openalex.org/W2154306802","https://openalex.org/W2155399006","https://openalex.org/W2155574851","https://openalex.org/W2156164439","https://openalex.org/W2160401863","https://openalex.org/W2161064670","https://openalex.org/W2163491393","https://openalex.org/W2163875168","https://openalex.org/W2164215396","https://openalex.org/W2164556705","https://openalex.org/W2164630659","https://openalex.org/W2164655883","https://openalex.org/W2164719406","https://openalex.org/W2164723678","https://openalex.org/W2164792480","https://openalex.org/W2165386471","https://openalex.org/W2168669997","https://openalex.org/W2169338321","https://openalex.org/W2169596174","https://openalex.org/W2170533247","https://openalex.org/W2171132703","https://openalex.org/W2172266499","https://openalex.org/W2178851813","https://openalex.org/W2204787929","https://openalex.org/W2259125289","https://openalex.org/W2327373035","https://openalex.org/W2345751169","https://openalex.org/W2363808666","https://openalex.org/W2413259650","https://openalex.org/W2416240212","https://openalex.org/W2431810343","https://openalex.org/W2472431700","https://openalex.org/W2475158195","https://openalex.org/W2513475772","https://openalex.org/W2526079928","https://openalex.org/W2547939082","https://openalex.org/W2565878906","https://openalex.org/W2573000119","https://openalex.org/W2589413388","https://openalex.org/W2597397443","https://openalex.org/W2606287093","https://openalex.org/W2612392052","https://openalex.org/W2619866103","https://openalex.org/W2624969551","https://openalex.org/W2736475236","https://openalex.org/W2740329929","https://openalex.org/W2749706395","https://openalex.org/W2762369482","https://openalex.org/W2765960304","https://openalex.org/W2768034221","https://openalex.org/W2768243005","https://openalex.org/W2768388437","https://openalex.org/W2774264477","https://openalex.org/W2775970056","https://openalex.org/W2776058048","https://openalex.org/W2776529137","https://openalex.org/W2793984129","https://openalex.org/W2799952182","https://openalex.org/W2800833148","https://openalex.org/W2885316071","https://openalex.org/W2914954892","https://openalex.org/W2949879949","https://openalex.org/W2951729237","https://openalex.org/W2952771490","https://openalex.org/W2973470729","https://openalex.org/W2978703830","https://openalex.org/W2979646676","https://openalex.org/W2987565922","https://openalex.org/W2991189113","https://openalex.org/W4230355000","https://openalex.org/W4235821061","https://openalex.org/W4248967111","https://openalex.org/W4255852062"],"related_works":["https://openalex.org/W1974890827","https://openalex.org/W2068920848","https://openalex.org/W2060170173","https://openalex.org/W791418637","https://openalex.org/W2271967268","https://openalex.org/W2080437799","https://openalex.org/W2771454385","https://openalex.org/W2464230482","https://openalex.org/W2881329929","https://openalex.org/W4230270652"],"abstract_inverted_index":{"Abstract":[0],"The":[1],"biogenesis":[2,97,137],"of":[3,59,70,80,83,92,95,101,106,135,142,149],"photosynthetically":[4],"active":[5],"chloroplasts":[6],"in":[7,67,127],"flowering":[8],"plants":[9],"(angiosperms)":[10],"is":[11,119],"initiated":[12],"by":[13,27,152],"light":[14],"through":[15,51],"the":[16,29,39,43,57,78,81,99,102,107,125,128,132,147],"red":[17],"and":[18,31,73,104,123],"far\u2010red":[19],"photoreceptors,":[20],"phytochromes,":[21],"which":[22,88],"activate":[23],"photosynthesis\u2010associated":[24],"genes":[25],"encoded":[26],"both":[28],"nuclear":[30,93],"plastid":[32,49,74,150],"genomes.":[33],"Because":[34],"photoactivated":[35],"phytochromes":[36,45],"localize":[37],"to":[38,47,77,98,121,131,138],"nucleus":[40],"but":[41],"not":[42],"plastids,":[44],"ought":[46],"control":[48,100,134],"transcription":[50,75,151],"nucleus\u2010to\u2010plastid":[52],"or":[53],"anterograde":[54,60,85,143],"signalling.":[55],"However,":[56],"mechanism":[58],"signalling":[61,72,86,144],"remains":[62],"poorly":[63],"understood.":[64],"Recent":[65],"advances":[66],"our":[68],"understanding":[69],"phytochrome":[71,133],"led":[76],"discovery":[79],"framework":[82],"an":[84],"pathway,":[87],"links":[89],"light\u2010dependent":[90],"regulation":[91,148],"repressors":[94],"chloroplast":[96,136],"assembly":[103],"activity":[105],"bacterial\u2010type":[108],"plastidial":[109],"RNA":[110],"polymerase":[111],"for":[112,146],"transcribing":[113],"plastid\u2010encoded":[114],"photosynthesis":[115],"genes.":[116],"This":[117],"article":[118],"aimed":[120],"gather":[122],"reanalyze":[124],"evidence":[126],"literature":[129],"relevant":[130],"forge":[139],"a":[140],"model":[141],"mechanisms":[145],"light.":[153]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":5}],"updated_date":"2026-10-10T09:11:00.788812","created_date":"2025-10-10T00:00:00"}