{"id":"https://openalex.org/W3016854908","doi":"https://doi.org/10.1364/translational.2020.jth2a.28","title":"A Molecular-MNIST Dataset for Machine Learning Study on Diffraction Imaging and Microscopy","display_name":"A Molecular-MNIST Dataset for Machine Learning Study on Diffraction Imaging and Microscopy","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3016854908","doi":"https://doi.org/10.1364/translational.2020.jth2a.28","mag":"3016854908"},"language":"en","primary_location":{"id":"doi:10.1364/translational.2020.jth2a.28","doi":"https://doi.org/10.1364/translational.2020.jth2a.28","is_oa":false,"landing_page_url":"https://doi.org/10.1364/translational.2020.jth2a.28","pdf_url":null,"source":{"id":"https://openalex.org/S4363605665","display_name":"Optics in the Life Sciences","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biophotonics Congress: Biomedical Optics 2020 (Translational, Microscopy, OCT, OTS, BRAIN)","raw_type":"proceedings-article"},"volume":null,"type":"conference-paper","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1911.07644","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Yan Zhang","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I4210151627","display_name":"National Energy Research Scientific Computing Center","ror":"https://ror.org/05v3mvq14","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521","https://openalex.org/I4210151627"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yan Zhang","raw_affiliation_strings":["NERSC, Lawrence Berkeley National Laboratory, Berkeley, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NERSC, Lawrence Berkeley National Laboratory, Berkeley, CA","institution_ids":["https://openalex.org/I148283060","https://openalex.org/I4210151627"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105696661","display_name":"Steve Farrell","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I4210151627","display_name":"National Energy Research Scientific Computing Center","ror":"https://ror.org/05v3mvq14","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521","https://openalex.org/I4210151627"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Steve Farrell","raw_affiliation_strings":["NERSC, Lawrence Berkeley National Laboratory, Berkeley, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NERSC, Lawrence Berkeley National Laboratory, Berkeley, CA","institution_ids":["https://openalex.org/I148283060","https://openalex.org/I4210151627"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064674425","display_name":"Michael F. Crowley","orcid":"https://orcid.org/0000-0001-5163-9398","observed_orcids":["https://orcid.org/0000-0001-5163-9398"]},"institutions":[{"id":"https://openalex.org/I1297288678","display_name":"National Laboratory of the Rockies","ror":"https://ror.org/036266993","country_code":"US","type":"facility","lineage":["https://openalex.org/I1297288678","https://openalex.org/I1330989302","https://openalex.org/I2800842121"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Michael Crowley","raw_affiliation_strings":["Bioscience Division, National Renewable Energy Laboratory, Golden, CO"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioscience Division, National Renewable Energy Laboratory, Golden, CO","institution_ids":["https://openalex.org/I1297288678"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025862507","display_name":"Lee Makowski","orcid":"https://orcid.org/0000-0003-0202-9264","observed_orcids":["https://orcid.org/0000-0003-0202-9264"]},"institutions":[{"id":"https://openalex.org/I12912129","display_name":"Northeastern University","ror":"https://ror.org/04t5xt781","country_code":"US","type":"education","lineage":["https://openalex.org/I12912129"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lee Makowski","raw_affiliation_strings":["Department of Bioengineering, Northeastern University, Boston, MA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Northeastern University, Boston, MA","institution_ids":["https://openalex.org/I12912129"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044323124","display_name":"Jack R. Deslippe","orcid":"https://orcid.org/0000-0003-1785-4187","observed_orcids":["https://orcid.org/0000-0003-1785-4187"]},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I4210151627","display_name":"National Energy Research Scientific Computing Center","ror":"https://ror.org/05v3mvq14","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521","https://openalex.org/I4210151627"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jack Deslippe","raw_affiliation_strings":["NERSC, Lawrence Berkeley National Laboratory, Berkeley, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NERSC, Lawrence Berkeley National Laboratory, Berkeley, CA","institution_ids":["https://openalex.org/I148283060","https://openalex.org/I4210151627"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5025862507","https://openalex.org/A5044323124","https://openalex.org/A5064674425","https://openalex.org/A5105696661"],"corresponding_institution_ids":["https://openalex.org/I12912129","https://openalex.org/I1297288678","https://openalex.org/I148283060","https://openalex.org/I4210151627"],"apc_list":null,"apc_paid":null,"fwci":1.8499,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.8011599,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"JTh2A.28","last_page":"JTh2A.28"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11183","display_name":"Advanced X-ray Imaging Techniques","score":0.5859000086784363,"subfield":{"id":"https://openalex.org/subfields/3108","display_name":"Radiation"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11183","display_name":"Advanced X-ray Imaging Techniques","score":0.5859000086784363,"subfield":{"id":"https://openalex.org/subfields/3108","display_name":"Radiation"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11897","display_name":"Digital Holography and Microscopy","score":0.07079999893903732,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.04769999906420708,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/molecular-imaging","display_name":"molecular imaging","score":0.5109999775886536},{"id":"https://openalex.org/keywords/diffraction-imaging","display_name":"diffraction imaging","score":0.8529999852180481},{"id":"https://openalex.org/keywords/microscopy","display_name":"microscopy","score":0.6010000109672546},{"id":"https://openalex.org/keywords/molecular-dynamics-trajectories","display_name":"molecular dynamics trajectories","score":0.5920000076293945},{"id":"https://openalex.org/keywords/structural-variants","display_name":"structural variants","score":0.6779999732971191},{"id":"https://openalex.org/keywords/benchmark-dataset","display_name":"benchmark dataset","score":0.7459999918937683},{"id":"https://openalex.org/keywords/scattering","display_name":"scattering","score":0.7509999871253967},{"id":"https://openalex.org/keywords/image-processing","display_name":"image processing","score":0.5960000157356262},{"id":"https://openalex.org/keywords/deep-learning","display_name":"deep learning","score":0.5649999976158142}],"concepts":[{"id":"https://openalex.org/C190502265","wikidata":"https://www.wikidata.org/wiki/Q17069496","display_name":"MNIST database","level":3,"score":0.8725848197937012},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7681653499603271},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6543947458267212},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.6307060122489929},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6139876842498779},{"id":"https://openalex.org/C57493831","wikidata":"https://www.wikidata.org/wiki/Q3134666","display_name":"Projection (relational algebra)","level":2,"score":0.5315627455711365},{"id":"https://openalex.org/C207114421","wikidata":"https://www.wikidata.org/wiki/Q133900","display_name":"Diffraction","level":2,"score":0.49121206998825073},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.46789705753326416},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4420585036277771},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.41699880361557007},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.37586307525634766},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3673563003540039},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.25526589155197144},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.20330482721328735},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.17008167505264282},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.0757882297039032},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.05977889895439148}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1364/translational.2020.jth2a.28","doi":"https://doi.org/10.1364/translational.2020.jth2a.28","is_oa":false,"landing_page_url":"https://doi.org/10.1364/translational.2020.jth2a.28","pdf_url":null,"source":{"id":"https://openalex.org/S4363605665","display_name":"Optics in the Life Sciences","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biophotonics Congress: Biomedical Optics 2020 (Translational, Microscopy, OCT, OTS, BRAIN)","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:1911.07644","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/abs/1911.07644","pdf_url":"https://arxiv.org/pdf/1911.07644","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt3xn9401z","doi":null,"is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/3xn9401z","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt3xn9401z","doi":null,"is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/3xn9401z","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:osti.gov:1575234","doi":null,"is_oa":false,"landing_page_url":"https://www.osti.gov/biblio/1575234","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"doi:10.48550/arxiv.1911.07644","doi":"https://doi.org/10.48550/arxiv.1911.07644","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1911.07644","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1911.07644","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/abs/1911.07644","pdf_url":"https://arxiv.org/pdf/1911.07644","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W1686810756","https://openalex.org/W2530615071","https://openalex.org/W2604272474"],"related_works":["https://openalex.org/W1628703707","https://openalex.org/W4295426380","https://openalex.org/W2886026402","https://openalex.org/W2887789668","https://openalex.org/W3191000785","https://openalex.org/W1573731922","https://openalex.org/W4389820659","https://openalex.org/W7220803177","https://openalex.org/W4285055871","https://openalex.org/W2097849111"],"abstract_inverted_index":{"An":[0],"image":[1,47],"dataset":[2,30,36],"of":[3,22,28,41,52],"10":[4],"different":[5],"size":[6],"molecules,":[7],"where":[8],"each":[9],"molecule":[10],"has":[11],"2,000":[12],"structural":[13],"variants,":[14],"is":[15,31],"generated":[16],"from":[17],"the":[18,38,50],"2D":[19],"cross-sectional":[20],"projection":[21],"Molecular":[23],"Dynamics":[24],"trajectories.":[25],"The":[26],"purpose":[27],"this":[29],"to":[32],"provide":[33],"a":[34],"benchmark":[35],"for":[37],"increasing":[39],"need":[40],"machine":[42],"learning,":[43],"deep":[44],"learning":[45],"and":[46,55],"processing":[48],"on":[49],"study":[51],"scattering,":[53],"imaging":[54],"microscopy.":[56]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-11-03T10:50:19.383937","created_date":"2020-04-24T00:00:00"}
