{"id":"https://openalex.org/W3014432010","doi":"https://doi.org/10.1073/pnas.1922873117","title":"Water lily ( Nymphaea thermarum ) genome reveals variable genomic signatures of ancient vascular cambium losses","display_name":"Water lily ( Nymphaea thermarum ) genome reveals variable genomic signatures of ancient vascular cambium losses","publication_year":2020,"publication_date":"2020-03-31","ids":{"openalex":"https://openalex.org/W3014432010","doi":"https://doi.org/10.1073/pnas.1922873117","mag":"3014432010","pmid":"https://pubmed.ncbi.nlm.nih.gov/32234787","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/7165481"},"language":"en","primary_location":{"id":"doi:10.1073/pnas.1922873117","doi":"https://doi.org/10.1073/pnas.1922873117","is_oa":true,"landing_page_url":"https://doi.org/10.1073/pnas.1922873117","pdf_url":"https://www.pnas.org/content/pnas/117/15/8649.full.pdf","source":{"id":"https://openalex.org/S125754415","display_name":"Proceedings of the National Academy of Sciences","issn_l":"0027-8424","issn":["0027-8424","1091-6490"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","dongbi-a","doyens","erih-plus","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320052","host_organization_name":"National Academy of Sciences","host_organization_lineage":["https://openalex.org/P4310320052"],"host_organization_lineage_names":["National Academy of Sciences"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the National Academy of Sciences","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://www.pnas.org/content/pnas/117/15/8649.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075448954","display_name":"Rebecca A. Povilus","orcid":"https://orcid.org/0000-0002-3812-2068","observed_orcids":["https://orcid.org/0000-0002-3812-2068"]},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rebecca A. Povilus","raw_affiliation_strings":["Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138;","Whitehead Institute for Biomedical Research, Cambridge, MA 02142;"],"raw_orcid":"https://orcid.org/0000-0002-3812-2068","affiliations":[{"raw_affiliation_string":"Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138;","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Cambridge, MA 02142;","institution_ids":["https://openalex.org/I4210157710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044718191","display_name":"Jeffrey M. DaCosta","orcid":"https://orcid.org/0000-0002-8590-2083","observed_orcids":["https://orcid.org/0000-0002-8590-2083"]},"institutions":[{"id":"https://openalex.org/I103531236","display_name":"Boston College","ror":"https://ror.org/02n2fzt79","country_code":"US","type":"education","lineage":["https://openalex.org/I103531236"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey M. DaCosta","raw_affiliation_strings":["Biology Department, Boston College, Chestnut Hill, MA 02467;","Harvard University Herbaria, Cambridge, MA 02138;"],"raw_orcid":"https://orcid.org/0000-0002-8590-2083","affiliations":[{"raw_affiliation_string":"Biology Department, Boston College, Chestnut Hill, MA 02467;","institution_ids":["https://openalex.org/I103531236"]},{"raw_affiliation_string":"Harvard University Herbaria, Cambridge, MA 02138;","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073550038","display_name":"Christopher J. Grassa","orcid":"https://orcid.org/0000-0002-2705-4872","observed_orcids":["https://orcid.org/0000-0002-2705-4872"]},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher Grassa","raw_affiliation_strings":["Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138;","Harvard University Herbaria, Cambridge, MA 02138;"],"raw_orcid":"https://orcid.org/0000-0002-2705-4872","affiliations":[{"raw_affiliation_string":"Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138;","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Harvard University Herbaria, Cambridge, MA 02138;","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053243502","display_name":"Prasad R. V. Satyaki","orcid":"https://orcid.org/0000-0002-5035-7652","observed_orcids":["https://orcid.org/0000-0002-5035-7652"]},"institutions":[{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Prasad R. V. Satyaki","raw_affiliation_strings":["Whitehead Institute for Biomedical Research, Cambridge, MA 02142;"],"raw_orcid":"https://orcid.org/0000-0002-5035-7652","affiliations":[{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Cambridge, MA 02142;","institution_ids":["https://openalex.org/I4210157710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087928665","display_name":"Morgan K. Moeglein","orcid":"https://orcid.org/0000-0003-3323-8333","observed_orcids":["https://orcid.org/0000-0003-3323-8333"]},"institutions":[{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Morgan Moeglein","raw_affiliation_strings":["Whitehead Institute for Biomedical Research, Cambridge, MA 02142;"],"raw_orcid":"https://orcid.org/0000-0003-3323-8333","affiliations":[{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Cambridge, MA 02142;","institution_ids":["https://openalex.org/I4210157710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034471618","display_name":"Johan Jaenisch","orcid":"https://orcid.org/0000-0002-1313-5436","observed_orcids":["https://orcid.org/0000-0002-1313-5436"]},"institutions":[{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Johan Jaenisch","raw_affiliation_strings":["Whitehead Institute for Biomedical Research, Cambridge, MA 02142;"],"raw_orcid":"https://orcid.org/0000-0002-1313-5436","affiliations":[{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Cambridge, MA 02142;","institution_ids":["https://openalex.org/I4210157710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054843846","display_name":"Zhenxiang Xi","orcid":"https://orcid.org/0000-0002-2851-5474","observed_orcids":["https://orcid.org/0000-0002-2851-5474"]},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenxiang Xi","raw_affiliation_strings":["Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, 610065 Chengdu, China;"],"raw_orcid":"https://orcid.org/0000-0002-2851-5474","affiliations":[{"raw_affiliation_string":"Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, 610065 Chengdu, China;","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063876409","display_name":"Sarah Mathews","orcid":"https://orcid.org/0000-0002-8959-0689","observed_orcids":["https://orcid.org/0000-0002-8959-0689"]},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210130210","display_name":"Australian National Herbarium","ror":"https://ror.org/02gkh1e90","country_code":"AU","type":"archive","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210130210","https://openalex.org/I4387156119"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Sarah Mathews","raw_affiliation_strings":["Australian National Herbarium, Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT 2601, Australia;","Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Australian National Herbarium, Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT 2601, Australia;","institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I4210130210"]},{"raw_affiliation_string":"Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138;","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056282469","display_name":"Mary A. Gehring","orcid":"https://orcid.org/0000-0003-2280-1522","observed_orcids":["https://orcid.org/0000-0003-2280-1522"]},"institutions":[{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mary Gehring","raw_affiliation_strings":["Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139;","Whitehead Institute for Biomedical Research, Cambridge, MA 02142;"],"raw_orcid":"https://orcid.org/0000-0003-2280-1522","affiliations":[{"raw_affiliation_string":"Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139;","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Cambridge, MA 02142;","institution_ids":["https://openalex.org/I4210157710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073113816","display_name":"Charles \u201cChuck\u201d Davis","orcid":"https://orcid.org/0000-0001-8747-1101","observed_orcids":["https://orcid.org/0000-0001-8747-1101"]},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Charles C. Davis","raw_affiliation_strings":["Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138;","Harvard University Herbaria, Cambridge, MA 02138;"],"raw_orcid":"https://orcid.org/0000-0001-8747-1101","affiliations":[{"raw_affiliation_string":"Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138;","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Harvard University Herbaria, Cambridge, MA 02138;","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032828176","display_name":"William E. Friedman","orcid":"https://orcid.org/0000-0003-0374-3427","observed_orcids":["https://orcid.org/0000-0003-0374-3427"]},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4387154449","display_name":"Arnold Arboretum","ror":"https://ror.org/05xsxgs79","country_code":"US","type":"archive","lineage":["https://openalex.org/I136199984","https://openalex.org/I4387154449"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"William E. Friedman","raw_affiliation_strings":["Arnold Arboretum of Harvard University, Boston, MA 02131","Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138;"],"raw_orcid":"https://orcid.org/0000-0003-0374-3427","affiliations":[{"raw_affiliation_string":"Arnold Arboretum of Harvard University, Boston, MA 02131","institution_ids":["https://openalex.org/I4387154449"]},{"raw_affiliation_string":"Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138;","institution_ids":["https://openalex.org/I136199984"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5032828176","https://openalex.org/A5073113816"],"corresponding_institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4387154449"],"apc_list":null,"apc_paid":null,"fwci":5.2279,"has_fulltext":true,"cited_by_count":63,"citation_normalized_percentile":{"value":0.96009032,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"117","issue":"15","first_page":"8649","last_page":"8656"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.5458999872207642,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.5458999872207642,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.32030001282691956,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.0949999988079071,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/water-lily","display_name":"water lily","score":0.8840000033378601},{"id":"https://openalex.org/keywords/angiosperm-evolution","display_name":"angiosperm evolution","score":0.8799999952316284},{"id":"https://openalex.org/keywords/nymphaeales","display_name":"Nymphaeales","score":0.9169999957084656},{"id":"https://openalex.org/keywords/secondary-xylem","display_name":"secondary xylem","score":0.6230000257492065},{"id":"https://openalex.org/keywords/phloem","display_name":"phloem","score":0.7139999866485596},{"id":"https://openalex.org/keywords/hd-zip-iii-transcription-factors","display_name":"HD-ZIP III transcription factors","score":0.9340000152587891},{"id":"https://openalex.org/keywords/revoluta","display_name":"REVOLUTA","score":0.9750000238418579},{"id":"https://openalex.org/keywords/gene-loss","display_name":"gene loss","score":0.777999997138977},{"id":"https://openalex.org/keywords/gene-divergence","display_name":"gene divergence","score":0.796999990940094},{"id":"https://openalex.org/keywords/nelumbo","display_name":"Nelumbo","score":0.6050000190734863},{"id":"https://openalex.org/keywords/monocots","display_name":"monocotyledons","score":0.8889999985694885},{"id":"https://openalex.org/keywords/genome-assembly","display_name":"genome assembly","score":0.625}],"concepts":[{"id":"https://openalex.org/C74949700","wikidata":"https://www.wikidata.org/wiki/Q369429","display_name":"Vascular cambium","level":4,"score":0.9113126993179321},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8914549946784973},{"id":"https://openalex.org/C49799701","wikidata":"https://www.wikidata.org/wiki/Q122811","display_name":"Xylem","level":2,"score":0.767113983631134},{"id":"https://openalex.org/C166294865","wikidata":"https://www.wikidata.org/wiki/Q5025089","display_name":"Cambium","level":3,"score":0.7084501385688782},{"id":"https://openalex.org/C35496372","wikidata":"https://www.wikidata.org/wiki/Q185138","display_name":"Phloem","level":2,"score":0.6514769792556763},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.6325466632843018},{"id":"https://openalex.org/C126021549","wikidata":"https://www.wikidata.org/wiki/Q207604","display_name":"Meristem","level":3,"score":0.6318017244338989},{"id":"https://openalex.org/C166397571","wikidata":"https://www.wikidata.org/wiki/Q968604","display_name":"Vascular tissue","level":2,"score":0.4984884262084961},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.34507232904434204},{"id":"https://openalex.org/C21410773","wikidata":"https://www.wikidata.org/wiki/Q220869","display_name":"Shoot","level":2,"score":0.06846848130226135}],"mesh":[{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014934","descriptor_name":"Wood","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014934","descriptor_name":"Wood","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D014934","descriptor_name":"Wood","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019684","descriptor_name":"Magnoliopsida","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019684","descriptor_name":"Magnoliopsida","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030721","descriptor_name":"Nymphaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D030721","descriptor_name":"Nymphaea","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D058506","descriptor_name":"Cambium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058506","descriptor_name":"Cambium","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D058506","descriptor_name":"Cambium","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1073/pnas.1922873117","doi":"https://doi.org/10.1073/pnas.1922873117","is_oa":true,"landing_page_url":"https://doi.org/10.1073/pnas.1922873117","pdf_url":"https://www.pnas.org/content/pnas/117/15/8649.full.pdf","source":{"id":"https://openalex.org/S125754415","display_name":"Proceedings of the National Academy of Sciences","issn_l":"0027-8424","issn":["0027-8424","1091-6490"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","dongbi-a","doyens","erih-plus","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320052","host_organization_name":"National Academy of Sciences","host_organization_lineage":["https://openalex.org/P4310320052"],"host_organization_lineage_names":["National Academy of Sciences"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the National Academy of Sciences","raw_type":"journal-article"},{"id":"doi:10.1101/2019.12.18.881573","doi":"https://doi.org/10.1101/2019.12.18.881573","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2019.12.18.881573","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2019/12/19/2019.12.18.881573.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmid:32234787","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32234787","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the National Academy of Sciences of the United States of America","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7165481","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC7165481/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proc Natl Acad Sci U S A","raw_type":"Text"},{"id":"pmh:oai:digitalcommons.lsu.edu:biosci_pubs-3614","doi":null,"is_oa":true,"landing_page_url":"https://digitalcommons.lsu.edu/biosci_pubs/2615","pdf_url":"https://digitalcommons.lsu.edu/cgi/viewcontent.cgi?article=3614&context=biosci_pubs","source":{"id":"https://openalex.org/S4210169993","display_name":"Civil War Book Review","issn_l":"1528-6592","issn":["1528-6592"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/P4310315936","host_organization_name":"Louisiana State University","host_organization_lineage":["https://openalex.org/P4310315936"],"host_organization_lineage_names":["Louisiana State University"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"},{"id":"pmh:oai:repository.lsu.edu:biosci_pubs-3614","doi":null,"is_oa":true,"landing_page_url":"https://repository.lsu.edu/biosci_pubs/2615","pdf_url":null,"source":{"id":"https://openalex.org/S4210169993","display_name":"Civil War Book Review","issn_l":"1528-6592","issn":["1528-6592"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/P4310315936","host_organization_name":"Louisiana State University","host_organization_lineage":["https://openalex.org/P4310315936"],"host_organization_lineage_names":["Louisiana State University"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"},{"id":"pmh:oai:dspace.mit.edu:1721.1/136660","doi":null,"is_oa":true,"landing_page_url":"https://hdl.handle.net/1721.1/136660","pdf_url":null,"source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"},{"id":"pmh:oai:dspace.mit.edu:1721.1/136660.2","doi":null,"is_oa":true,"landing_page_url":"https://hdl.handle.net/1721.1/136660.2","pdf_url":null,"source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1073/pnas.1922873117","doi":"https://doi.org/10.1073/pnas.1922873117","is_oa":true,"landing_page_url":"https://doi.org/10.1073/pnas.1922873117","pdf_url":"https://www.pnas.org/content/pnas/117/15/8649.full.pdf","source":{"id":"https://openalex.org/S125754415","display_name":"Proceedings of the National Academy of Sciences","issn_l":"0027-8424","issn":["0027-8424","1091-6490"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","dongbi-a","doyens","erih-plus","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320052","host_organization_name":"National Academy of Sciences","host_organization_lineage":["https://openalex.org/P4310320052"],"host_organization_lineage_names":["National Academy of Sciences"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the National Academy of Sciences","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G2353862180","display_name":"Floral development, conservation genetics, and horizontal gene transfer in the world's largest flowers, Rafflesiaceae","funder_award_id":"1120243","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G492580395","display_name":"Did the First Angiosperms Lack an Embryo-Nourishing Endosperm?   (An Accomplishment-Based Renewal)","funder_award_id":"0919986","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5321104736","display_name":"Comparative Genomics of a Species Radiation: Sequencing the Apple Tribe","funder_award_id":"1416825","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6876143054","display_name":"CAREER: Regulation and Function of Imprinted Gene Expression in Seeds","funder_award_id":"1453459","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7455854264","display_name":"Identifying Deeply Conserved Patterns of Epigenetic Modification and Imprinting during Seed Development","funder_award_id":"1812116","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320324900","display_name":"Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn","ror":"https://ror.org/041nas322"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3014432010.pdf","grobid_xml":"https://content.openalex.org/works/W3014432010.grobid-xml"},"referenced_works_count":102,"referenced_works":["https://openalex.org/W29790389","https://openalex.org/W302267139","https://openalex.org/W589087086","https://openalex.org/W1484347389","https://openalex.org/W1546341583","https://openalex.org/W1716107526","https://openalex.org/W1865607923","https://openalex.org/W1889423108","https://openalex.org/W1950336946","https://openalex.org/W1979835060","https://openalex.org/W1984331558","https://openalex.org/W1989471759","https://openalex.org/W1992512552","https://openalex.org/W1996368693","https://openalex.org/W1996700726","https://openalex.org/W2002212941","https://openalex.org/W2009502433","https://openalex.org/W2010659362","https://openalex.org/W2011657487","https://openalex.org/W2017629472","https://openalex.org/W2021579219","https://openalex.org/W2024426169","https://openalex.org/W2025089507","https://openalex.org/W2031129153","https://openalex.org/W2034296358","https://openalex.org/W2046183549","https://openalex.org/W2058378183","https://openalex.org/W2059724298","https://openalex.org/W2062612066","https://openalex.org/W2064755809","https://openalex.org/W2065082452","https://openalex.org/W2069458148","https://openalex.org/W2072500339","https://openalex.org/W2072803260","https://openalex.org/W2077474185","https://openalex.org/W2087478985","https://openalex.org/W2099118096","https://openalex.org/W2099753867","https://openalex.org/W2101842049","https://openalex.org/W2113008914","https://openalex.org/W2115567294","https://openalex.org/W2115888213","https://openalex.org/W2116643047","https://openalex.org/W2119967660","https://openalex.org/W2122159589","https://openalex.org/W2124166542","https://openalex.org/W2124985265","https://openalex.org/W2126419817","https://openalex.org/W2127528838","https://openalex.org/W2128340880","https://openalex.org/W2128687649","https://openalex.org/W2129744420","https://openalex.org/W2131551905","https://openalex.org/W2132926880","https://openalex.org/W2138213161","https://openalex.org/W2138872556","https://openalex.org/W2139419802","https://openalex.org/W2141052558","https://openalex.org/W2141292707","https://openalex.org/W2141820044","https://openalex.org/W2144148736","https://openalex.org/W2145697624","https://openalex.org/W2148592495","https://openalex.org/W2148776310","https://openalex.org/W2149869559","https://openalex.org/W2153334396","https://openalex.org/W2155628349","https://openalex.org/W2156067749","https://openalex.org/W2156125289","https://openalex.org/W2158714788","https://openalex.org/W2159368494","https://openalex.org/W2163249996","https://openalex.org/W2164094120","https://openalex.org/W2167704745","https://openalex.org/W2170831380","https://openalex.org/W2176133416","https://openalex.org/W2186413669","https://openalex.org/W2253153097","https://openalex.org/W2318157063","https://openalex.org/W2329700557","https://openalex.org/W2509725103","https://openalex.org/W2510019316","https://openalex.org/W2518083254","https://openalex.org/W2521028284","https://openalex.org/W2528078330","https://openalex.org/W2557992747","https://openalex.org/W2558183941","https://openalex.org/W2562207868","https://openalex.org/W2591420526","https://openalex.org/W2597362685","https://openalex.org/W2604308930","https://openalex.org/W2626589354","https://openalex.org/W2753994487","https://openalex.org/W2756236522","https://openalex.org/W2761119899","https://openalex.org/W2771351505","https://openalex.org/W2786767884","https://openalex.org/W2792579874","https://openalex.org/W2898357121","https://openalex.org/W2931347332","https://openalex.org/W2945422521","https://openalex.org/W6602063838"],"related_works":["https://openalex.org/W2995259736","https://openalex.org/W3016410811","https://openalex.org/W2527201061","https://openalex.org/W7160403623","https://openalex.org/W7160511259","https://openalex.org/W2964033010","https://openalex.org/W7163325946","https://openalex.org/W2045071699","https://openalex.org/W7133537416","https://openalex.org/W1500223951"],"abstract_inverted_index":{"For":[0],"more":[1],"than":[2],"225":[3],"million":[4,22],"y,":[5],"all":[6,92],"seed":[7,93],"plants":[8],"were":[9],"woody":[10,41],"trees,":[11],"shrubs,":[12],"or":[13],"vines.":[14],"Shortly":[15],"after":[16],"the":[17,26,33,45,48,62,75,104,114,154,174,234,239,245],"origin":[18],"of":[19,32,51,61,70,77,103,116,141,153,161,179,205,208,226,236,238,248],"angiosperms":[20],"\u223c140":[21],"y":[23],"ago":[24],"(MYA),":[25],"Nymphaeales":[27],"(water":[28],"lilies)":[29],"became":[30],"one":[31],"first":[34],"lineages":[35,131],"to":[36,124],"deviate":[37],"from":[38,126],"their":[39],"ancestral,":[40],"habit":[42],"by":[43,85,149],"losing":[44],"vascular":[46,209],"cambium,":[47],"meristematic":[49],"population":[50],"cells":[52],"that":[53,67,212],"produces":[54],"secondary":[55,71],"xylem":[56,79],"(wood)":[57],"and":[58,64,80,88,98,121,129,134,144,176],"phloem.":[59],"Many":[60],"genes":[63,215],"gene":[65,142],"families":[66],"regulate":[68,74],"differentiation":[69,76],"tissues":[72],"also":[73,172],"primary":[78],"phloem,":[81],"which":[82,164],"are":[83],"produced":[84],"apical":[86],"meristems":[87],"retained":[89],"in":[90,168,198,221],"nearly":[91],"plants.":[94],"Here,":[95],"we":[96],"sequenced":[97],"assembled":[99],"a":[100,150],"draft":[101],"genome":[102],"water":[105],"lily":[106],"Nymphaea":[107,146,175],"thermarum":[108],",":[109,163],"an":[110],"emerging":[111],"system":[112],"for":[113],"study":[115],"early":[117],"flowering":[118],"plant":[119],"evolution,":[120],"compared":[122],"it":[123],"genomes":[125],"other":[127,169],"cambium-bearing":[128],"cambium-less":[130],"(e.g.,":[132],"monocots":[133],"Nelumbo":[135,193],").":[136],"This":[137],"revealed":[138],"lineage-specific":[139],"patterns":[140,220],"loss":[143,160,207],"divergence.":[145],"is":[147],"characterized":[148],"significant":[151],"contraction":[152],"HD-ZIP":[155],"III":[156],"transcription":[157],"factors,":[158],"specifically":[159],"REVOLUTA":[162],"influences":[165],"cambial":[166],"activity":[167],"angiosperms.":[170],"We":[171],"found":[173],"monocot":[177],"copies":[178],"cambium-associated":[180,199],"CLE":[181],"signaling":[182],"peptides":[183],"display":[184],"unique":[185,218],"substitutions":[186],"at":[187],"otherwise":[188],"highly":[189],"conserved":[190],"amino":[191],"acids.":[192],"displays":[194],"no":[195],"obvious":[196],"divergence":[197,219],"genes.":[200],"The":[201],"divergent":[202],"genomic":[203],"signatures":[204],"convergent":[206],"cambium":[210],"reveals":[211],"even":[213],"pleiotropic":[214],"can":[216],"exhibit":[217],"association":[222],"with":[223,244],"independent":[224],"events":[225],"trait":[227],"loss.":[228],"Our":[229],"results":[230],"shed":[231],"light":[232],"on":[233],"evolution":[235],"herbaceousness\u2014one":[237],"key":[240],"biological":[241],"innovations":[242],"associated":[243],"earliest":[246],"phases":[247],"angiosperm":[249],"evolution.":[250]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":5}],"updated_date":"2026-11-11T12:16:26.678958","created_date":"2020-04-10T00:00:00"}
