{"id":"https://openalex.org/W3008405029","doi":"https://doi.org/10.1186/s12864-020-6523-2","title":"Genomic and ecological attributes of marine bacteriophages encoding bacterial virulence genes","display_name":"Genomic and ecological attributes of marine bacteriophages encoding bacterial virulence genes","publication_year":2020,"publication_date":"2020-02-05","ids":{"openalex":"https://openalex.org/W3008405029","doi":"https://doi.org/10.1186/s12864-020-6523-2","mag":"3008405029","pmid":"https://pubmed.ncbi.nlm.nih.gov/32024463","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/7003362"},"language":"en","primary_location":{"id":"doi:10.1186/s12864-020-6523-2","doi":"https://doi.org/10.1186/s12864-020-6523-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12864-020-6523-2","pdf_url":"https://bmcgenomics.biomedcentral.com/track/pdf/10.1186/s12864-020-6523-2.pdf","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcgenomics.biomedcentral.com/track/pdf/10.1186/s12864-020-6523-2.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005588845","display_name":"Cynthia B. Silveira","orcid":"https://orcid.org/0000-0002-9533-5588","observed_orcids":["https://orcid.org/0000-0002-9533-5588"]},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]},{"id":"https://openalex.org/I26538001","display_name":"San Diego State University","ror":"https://ror.org/0264fdx42","country_code":"US","type":"education","lineage":["https://openalex.org/I26538001"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Cynthia B. Silveira","raw_affiliation_strings":["Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA. cynthiabsilveira@gmail.com","Department of Biology, University of Miami, 1301 Memorial Dr., Coral Gables, FL, 33146, USA. cynthiabsilveira@gmail.com","Viral Information Institute, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA. cynthiabsilveira@gmail.com","Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA"],"raw_orcid":"https://orcid.org/0000-0002-9533-5588","affiliations":[{"raw_affiliation_string":"Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA. cynthiabsilveira@gmail.com","institution_ids":["https://openalex.org/I26538001"]},{"raw_affiliation_string":"Department of Biology, University of Miami, 1301 Memorial Dr., Coral Gables, FL, 33146, USA. cynthiabsilveira@gmail.com","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Viral Information Institute, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA. cynthiabsilveira@gmail.com","institution_ids":["https://openalex.org/I26538001"]},{"raw_affiliation_string":"Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","institution_ids":["https://openalex.org/I26538001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042571306","display_name":"Felipe H. Coutinho","orcid":"https://orcid.org/0000-0001-6430-7069","observed_orcids":["https://orcid.org/0000-0001-6430-7069"]},"institutions":[{"id":"https://openalex.org/I111262870","display_name":"Universitat de Miguel Hern\u00e1ndez d'Elx","ror":"https://ror.org/01azzms13","country_code":"ES","type":"education","lineage":["https://openalex.org/I111262870"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Felipe H. Coutinho","raw_affiliation_strings":["Departamento de Producci\u00f3n Vegetal y Microbiolog\u00eda, Universidad Miguel Hern\u00e1ndez, Apartado 18, 03550, San Juan de Alicante, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Producci\u00f3n Vegetal y Microbiolog\u00eda, Universidad Miguel Hern\u00e1ndez, Apartado 18, 03550, San Juan de Alicante, Spain","institution_ids":["https://openalex.org/I111262870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112491407","display_name":"Giselle S. Cavalcanti","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I26538001","display_name":"San Diego State University","ror":"https://ror.org/0264fdx42","country_code":"US","type":"education","lineage":["https://openalex.org/I26538001"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Giselle S. Cavalcanti","raw_affiliation_strings":["Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","Viral Information Institute, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","institution_ids":["https://openalex.org/I26538001"]},{"raw_affiliation_string":"Viral Information Institute, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","institution_ids":["https://openalex.org/I26538001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064925165","display_name":"Sean Benler","orcid":"https://orcid.org/0000-0001-7985-1294","observed_orcids":["https://orcid.org/0000-0001-7985-1294"]},"institutions":[{"id":"https://openalex.org/I26538001","display_name":"San Diego State University","ror":"https://ror.org/0264fdx42","country_code":"US","type":"education","lineage":["https://openalex.org/I26538001"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean Benler","raw_affiliation_strings":["Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","Viral Information Institute, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","institution_ids":["https://openalex.org/I26538001"]},{"raw_affiliation_string":"Viral Information Institute, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","institution_ids":["https://openalex.org/I26538001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021067423","display_name":"Michael P. Doane","orcid":"https://orcid.org/0000-0001-9820-2193","observed_orcids":["https://orcid.org/0000-0001-9820-2193"]},"institutions":[{"id":"https://openalex.org/I26538001","display_name":"San Diego State University","ror":"https://ror.org/0264fdx42","country_code":"US","type":"education","lineage":["https://openalex.org/I26538001"]},{"id":"https://openalex.org/I4210139252","display_name":"Sydney Institute of Marine Science","ror":"https://ror.org/03ry2ah66","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210139252"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Michael P. Doane","raw_affiliation_strings":["Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","Sydney Institute of Marine Science, 19 Chowder Bay Rd, Mosman, NSW, 2088, Australia","Viral Information Institute, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","institution_ids":["https://openalex.org/I26538001"]},{"raw_affiliation_string":"Sydney Institute of Marine Science, 19 Chowder Bay Rd, Mosman, NSW, 2088, Australia","institution_ids":["https://openalex.org/I4210139252"]},{"raw_affiliation_string":"Viral Information Institute, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","institution_ids":["https://openalex.org/I26538001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051908367","display_name":"Elizabeth Ann Dinsdale","orcid":"https://orcid.org/0000-0002-2177-203X","observed_orcids":["https://orcid.org/0000-0002-2177-203X"]},"institutions":[{"id":"https://openalex.org/I26538001","display_name":"San Diego State University","ror":"https://ror.org/0264fdx42","country_code":"US","type":"education","lineage":["https://openalex.org/I26538001"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elizabeth A. Dinsdale","raw_affiliation_strings":["Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","Viral Information Institute, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","institution_ids":["https://openalex.org/I26538001"]},{"raw_affiliation_string":"Viral Information Institute, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","institution_ids":["https://openalex.org/I26538001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036802114","display_name":"Robert Alan Edwards","orcid":"https://orcid.org/0000-0001-8383-8949","observed_orcids":["https://orcid.org/0000-0001-8383-8949"]},"institutions":[{"id":"https://openalex.org/I26538001","display_name":"San Diego State University","ror":"https://ror.org/0264fdx42","country_code":"US","type":"education","lineage":["https://openalex.org/I26538001"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert A. Edwards","raw_affiliation_strings":["Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","Viral Information Institute, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","institution_ids":["https://openalex.org/I26538001"]},{"raw_affiliation_string":"Viral Information Institute, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","institution_ids":["https://openalex.org/I26538001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036396710","display_name":"Ronaldo Bastos Francini-Filho","orcid":"https://orcid.org/0000-0002-7678-6797","observed_orcids":["https://orcid.org/0000-0002-7678-6797"]},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Ronaldo B. Francini-Filho","raw_affiliation_strings":["Centro de Biologia Marinha, Universidade de S\u00e3o Paulo, Rodovia Manoel Hyp\u00f3lito do Rego, Km 131,50, S\u00e3o Sebasti\u00e3o, SP, 11600-000, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Biologia Marinha, Universidade de S\u00e3o Paulo, Rodovia Manoel Hyp\u00f3lito do Rego, Km 131,50, S\u00e3o Sebasti\u00e3o, SP, 11600-000, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029925178","display_name":"Cristiane Carneiro Thompson","orcid":"https://orcid.org/0000-0001-9510-3675","observed_orcids":["https://orcid.org/0000-0001-9510-3675"]},"institutions":[{"id":"https://openalex.org/I122140584","display_name":"Universidade Federal do Rio de Janeiro","ror":"https://ror.org/03490as77","country_code":"BR","type":"education","lineage":["https://openalex.org/I122140584"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Cristiane C. Thompson","raw_affiliation_strings":["Instituto de Biologia, Universidade Federal do Rio de Janeiro, Av. Carlos Chagas Filho, 373, Rio de Janeiro, RJ, 21941- 599, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Biologia, Universidade Federal do Rio de Janeiro, Av. Carlos Chagas Filho, 373, Rio de Janeiro, RJ, 21941- 599, Brazil","institution_ids":["https://openalex.org/I122140584"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086012925","display_name":"Antoni Luque","orcid":"https://orcid.org/0000-0002-5817-4914","observed_orcids":["https://orcid.org/0000-0002-5817-4914"]},"institutions":[{"id":"https://openalex.org/I26538001","display_name":"San Diego State University","ror":"https://ror.org/0264fdx42","country_code":"US","type":"education","lineage":["https://openalex.org/I26538001"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Antoni Luque","raw_affiliation_strings":["Computational Science Research Center, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","Department of Mathematics and Statistics, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","Viral Information Institute, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Science Research Center, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","institution_ids":["https://openalex.org/I26538001"]},{"raw_affiliation_string":"Department of Mathematics and Statistics, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","institution_ids":["https://openalex.org/I26538001"]},{"raw_affiliation_string":"Viral Information Institute, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","institution_ids":["https://openalex.org/I26538001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026525836","display_name":"Forest L. Rohwer","orcid":"https://orcid.org/0000-0003-1548-5429","observed_orcids":["https://orcid.org/0000-0003-1548-5429"]},"institutions":[{"id":"https://openalex.org/I26538001","display_name":"San Diego State University","ror":"https://ror.org/0264fdx42","country_code":"US","type":"education","lineage":["https://openalex.org/I26538001"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Forest L. Rohwer","raw_affiliation_strings":["Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","Viral Information Institute, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","institution_ids":["https://openalex.org/I26538001"]},{"raw_affiliation_string":"Viral Information Institute, San Diego State University, 5500 Campanile Dr, San Diego, CA, 92182, USA","institution_ids":["https://openalex.org/I26538001"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000690971","display_name":"Fabiano Lopes Thompson","orcid":"https://orcid.org/0000-0002-7562-1683","observed_orcids":["https://orcid.org/0000-0002-7562-1683"]},"institutions":[{"id":"https://openalex.org/I122140584","display_name":"Universidade Federal do Rio de Janeiro","ror":"https://ror.org/03490as77","country_code":"BR","type":"education","lineage":["https://openalex.org/I122140584"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Fabiano Thompson","raw_affiliation_strings":["SAGE/COPPE, Universidade Federal do Rio de Janeiro, Av. Carlos Chagas Filho, 373, Rio de Janeiro, RJ, 21941- 599, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SAGE/COPPE, Universidade Federal do Rio de Janeiro, Av. Carlos Chagas Filho, 373, Rio de Janeiro, RJ, 21941- 599, Brazil","institution_ids":["https://openalex.org/I122140584"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5005588845"],"corresponding_institution_ids":["https://openalex.org/I145608581","https://openalex.org/I26538001"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":3.4491,"has_fulltext":true,"cited_by_count":45,"citation_normalized_percentile":{"value":0.93057075,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"21","issue":"1","first_page":"126","last_page":"126"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10506","display_name":"Aquaculture disease management and microbiota","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10341","display_name":"Coral and Marine Ecosystems Studies","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/marine-bacteriophages","display_name":"marine bacteriophages","score":0.8920000195503235},{"id":"https://openalex.org/keywords/coral-reef-degradation","display_name":"coral reef degradation","score":0.6980000138282776},{"id":"https://openalex.org/keywords/bacterial-density","display_name":"bacterial density","score":0.7450000047683716},{"id":"https://openalex.org/keywords/viral-community-diversity","display_name":"viral community diversity","score":0.4959999918937683},{"id":"https://openalex.org/keywords/phage-host-interactions","display_name":"phage-host interactions","score":0.6299999952316284},{"id":"https://openalex.org/keywords/lysogeny","display_name":"lysogeny","score":0.8140000104904175},{"id":"https://openalex.org/keywords/coral-pathogens","display_name":"coral pathogens","score":0.4909999966621399},{"id":"https://openalex.org/keywords/host-prediction","display_name":"host prediction","score":0.3100000023841858}],"concepts":[{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.9016348123550415},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8915980458259583},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6908681392669678},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6463272571563721},{"id":"https://openalex.org/C92938381","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Horizontal gene transfer","level":4,"score":0.5435488224029541},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.504794716835022},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.46225258708000183},{"id":"https://openalex.org/C136199206","wikidata":"https://www.wikidata.org/wiki/Q1148110","display_name":"Lysogenic cycle","level":5,"score":0.43576762080192566},{"id":"https://openalex.org/C2776441376","wikidata":"https://www.wikidata.org/wiki/Q165028","display_name":"Bacteriophage","level":4,"score":0.3761957883834839},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.3746456801891327},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.10732036828994751}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D037521","descriptor_name":"Virulence Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D057894","descriptor_name":"Coral Reefs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12864-020-6523-2","doi":"https://doi.org/10.1186/s12864-020-6523-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12864-020-6523-2","pdf_url":"https://bmcgenomics.biomedcentral.com/track/pdf/10.1186/s12864-020-6523-2.pdf","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7003362","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7003362","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"Text"},{"id":"pmid:32024463","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32024463","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC genomics","raw_type":"Journal Article"},{"id":"pmh:002999157","doi":null,"is_oa":true,"landing_page_url":"https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-020-6523-2","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da USP (Biblioteca Digital da Produ\u00e7\u00e3o Intelectual)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:fb516305c9074858944c2cbaf4869d49","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/fb516305c9074858944c2cbaf4869d49","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Genomics, Vol 21, Iss 1, Pp 1-11 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12864-020-6523-2","doi":"https://doi.org/10.1186/s12864-020-6523-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12864-020-6523-2","pdf_url":"https://bmcgenomics.biomedcentral.com/track/pdf/10.1186/s12864-020-6523-2.pdf","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","display_name":"Life below water","score":0.6503000259399414}],"study_designs":[],"awards":[{"id":"https://openalex.org/G2510105062","display_name":null,"funder_award_id":"234702","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G4286266011","display_name":"II-EN: Computational Enhancement of Analytical Metagenomics Systems","funder_award_id":"1305112","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5277005270","display_name":"STEMM: Sequence Technology Education Using Microbial Metagenomes","funder_award_id":"1323809","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6578348592","display_name":"Experimental and Computational Determination of Microbial Genotypes and Phenotypes","funder_award_id":"1330800","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306202","display_name":"Gordon and Betty Moore Foundation","ror":"https://ror.org/006wxqw41"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322749","display_name":"Funda\u00e7\u00e3o Carlos Chagas Filho de Amparo \u00e0 Pesquisa do Estado do Rio de Janeiro","ror":"https://ror.org/03kk0s825"},{"id":"https://openalex.org/F4320336557","display_name":"Ci\u00eancia sem Fronteiras","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3008405029.pdf","grobid_xml":"https://content.openalex.org/works/W3008405029.grobid-xml"},"referenced_works_count":78,"referenced_works":["https://openalex.org/W273955616","https://openalex.org/W1550975330","https://openalex.org/W1650969180","https://openalex.org/W1827245444","https://openalex.org/W1958058086","https://openalex.org/W1972740086","https://openalex.org/W1976560971","https://openalex.org/W1977066773","https://openalex.org/W1984526103","https://openalex.org/W1985925916","https://openalex.org/W1986708244","https://openalex.org/W1989348205","https://openalex.org/W1995614275","https://openalex.org/W2003208744","https://openalex.org/W2008856488","https://openalex.org/W2014051173","https://openalex.org/W2019489332","https://openalex.org/W2020939898","https://openalex.org/W2033702989","https://openalex.org/W2036945689","https://openalex.org/W2044920259","https://openalex.org/W2050693575","https://openalex.org/W2050783903","https://openalex.org/W2050896965","https://openalex.org/W2051583325","https://openalex.org/W2066212698","https://openalex.org/W2072187285","https://openalex.org/W2073672902","https://openalex.org/W2074113031","https://openalex.org/W2096529812","https://openalex.org/W2114835737","https://openalex.org/W2118040479","https://openalex.org/W2119859604","https://openalex.org/W2127175247","https://openalex.org/W2128214209","https://openalex.org/W2131171044","https://openalex.org/W2134752293","https://openalex.org/W2137678717","https://openalex.org/W2138952930","https://openalex.org/W2141041292","https://openalex.org/W2146966776","https://openalex.org/W2148245360","https://openalex.org/W2151183612","https://openalex.org/W2154995327","https://openalex.org/W2155090350","https://openalex.org/W2156911394","https://openalex.org/W2163250554","https://openalex.org/W2168749192","https://openalex.org/W2169899471","https://openalex.org/W2170551349","https://openalex.org/W2197515957","https://openalex.org/W2202243629","https://openalex.org/W2245444176","https://openalex.org/W2255797180","https://openalex.org/W2300639547","https://openalex.org/W2320294474","https://openalex.org/W2342446380","https://openalex.org/W2414443280","https://openalex.org/W2468409351","https://openalex.org/W2502299046","https://openalex.org/W2514983714","https://openalex.org/W2521169042","https://openalex.org/W2559292946","https://openalex.org/W2593449349","https://openalex.org/W2602855059","https://openalex.org/W2605897693","https://openalex.org/W2607699162","https://openalex.org/W2607765444","https://openalex.org/W2613698763","https://openalex.org/W2735062779","https://openalex.org/W2754618691","https://openalex.org/W2759689312","https://openalex.org/W2776888625","https://openalex.org/W2803829633","https://openalex.org/W2810340995","https://openalex.org/W2941437619","https://openalex.org/W2966823177","https://openalex.org/W2993436931"],"related_works":["https://openalex.org/W6920887083","https://openalex.org/W4400863639","https://openalex.org/W7165559622","https://openalex.org/W4404712468","https://openalex.org/W2894930657","https://openalex.org/W2157530439","https://openalex.org/W4414577557","https://openalex.org/W2806336739","https://openalex.org/W7033239819","https://openalex.org/W7164382367"],"abstract_inverted_index":{"BACKGROUND:":[0],"Bacteriophages":[1],"encode":[2],"genes":[3,15,55,96,126,147,168],"that":[4,118,157,232,238,267],"modify":[5],"bacterial":[6,24,30,110,119,140,150,170,216,262],"functions":[7,50],"during":[8,240],"infection.":[9],"The":[10,92,130,229],"acquisition":[11],"of":[12,23,44,53,89,94,124,133,145,174,179,190,206,209,223,253,261,274],"phage-encoded":[13,45],"virulence":[14,46,90,95,125,210,217,263],"is":[16,244],"a":[17,86,247],"major":[18],"mechanism":[19],"for":[20,104,194],"the":[21,42,49,60,72,99,113,122,207,221,226,233,250,257,272],"rise":[22,273],"pathogens.":[25],"In":[26],"coral":[27,81,241],"reefs,":[28],"high":[29,149,160],"density":[31,111,120,162],"and":[32,51,78,109,172,259],"lysogeny":[33],"has":[34],"been":[35],"proposed":[36],"to":[37,143,188],"exacerbate":[38],"reef":[39,61,242],"decline":[40],"through":[41],"transfer":[43],"genes.":[47,91,211,264],"However,":[48],"distribution":[52,260],"these":[54],"in":[56,76,98,112,165,220,235,249,256,271,276],"phage":[57],"virions":[58],"on":[59],"remain":[62],"unknown.":[63],"RESULTS:":[64],"Here,":[65],"over":[66],"28,000":[67],"assembled":[68],"viral":[69,74,100],"genomes":[70,101,222],"from":[71],"free":[73],"community":[75,227],"Atlantic":[77],"Pacific":[79],"Ocean":[80],"reefs":[82,158],"were":[83,163,198],"queried":[84],"against":[85],"curated":[87],"database":[88],"diversity":[93,132,258],"encoded":[97,127,219],"was":[102,136,202],"tested":[103],"relationships":[105],"with":[106,139,159,246],"host":[107,191,200],"taxonomy":[108,201],"environment.":[114],"These":[115],"analyses":[116],"showed":[117,156,231],"predicted":[121],"profile":[123],"by":[128],"phages.":[129],"Shannon":[131],"virulence-encoding":[134],"phages":[135,180,268],"negatively":[137],"related":[138],"density,":[141],"leading":[142],"dominance":[144],"fewer":[146],"at":[148,225],"abundances.":[151],"A":[152],"statistical":[153],"learning":[154],"analysis":[155],"microbial":[161,236],"enriched":[164],"viruses":[166],"encoding":[167],"enabling":[169],"recognition":[171],"invasion":[173],"metazoan":[175],"epithelium.":[176],"Over":[177],"60%":[178],"could":[181],"not":[182,203],"have":[183],"their":[184],"hosts":[185,197],"identified":[186],"due":[187],"limitations":[189],"prediction":[192],"tools;":[193],"those":[195],"which":[196],"identified,":[199],"an":[204],"indicator":[205],"presence":[208],"CONCLUSIONS:":[212],"This":[213,265],"study":[214],"described":[215],"factors":[218],"bacteriophages":[224],"level.":[228],"results":[230],"increase":[234],"densities":[237],"occurs":[239],"degradation":[243],"associated":[245],"change":[248],"genomic":[251],"repertoire":[252],"bacteriophages,":[254],"specifically":[255],"suggests":[266],"are":[269],"implicated":[270],"pathogens":[275],"disturbed":[277],"marine":[278],"ecosystems.":[279]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":5}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2020-03-06T00:00:00"}
