{"id":"https://openalex.org/W3000873225","doi":"https://doi.org/10.1093/gbe/evaa008","title":"The Genome of the Great Gerbil Reveals Species-Specific Duplication of an MHCII Gene","display_name":"The Genome of the Great Gerbil Reveals Species-Specific Duplication of an MHCII Gene","publication_year":2020,"publication_date":"2020-01-18","ids":{"openalex":"https://openalex.org/W3000873225","doi":"https://doi.org/10.1093/gbe/evaa008","mag":"3000873225","pmid":"https://pubmed.ncbi.nlm.nih.gov/31971556","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/7046166"},"language":"en","primary_location":{"id":"doi:10.1093/gbe/evaa008","doi":"https://doi.org/10.1093/gbe/evaa008","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gbe/evaa008","pdf_url":"https://academic.oup.com/gbe/article-pdf/12/2/3832/32679870/evaa008.pdf","source":{"id":"https://openalex.org/S10195028","display_name":"Genome Biology and Evolution","issn_l":"1759-6653","issn":["1759-6653"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-d","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Biology and Evolution","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/gbe/article-pdf/12/2/3832/32679870/evaa008.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044371388","display_name":"Pernille Nilsson","orcid":"https://orcid.org/0000-0002-8049-8173","observed_orcids":["https://orcid.org/0000-0002-8049-8173"]},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Pernille Nilsson","raw_affiliation_strings":["Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0002-8049-8173","affiliations":[{"raw_affiliation_string":"Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042574361","display_name":"Monica Hongr\u00f8 Solbakken","orcid":"https://orcid.org/0000-0002-9677-403X","observed_orcids":["https://orcid.org/0000-0002-9677-403X"]},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Monica H Solbakken","raw_affiliation_strings":["Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0002-9677-403X","affiliations":[{"raw_affiliation_string":"Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046769596","display_name":"Boris V. Schmid","orcid":"https://orcid.org/0000-0003-0452-623X","observed_orcids":["https://orcid.org/0000-0003-0452-623X"]},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Boris V Schmid","raw_affiliation_strings":["Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091359251","display_name":"Russell J. S. Orr","orcid":"https://orcid.org/0000-0002-1972-1321","observed_orcids":["https://orcid.org/0000-0002-1972-1321"]},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Russell J S Orr","raw_affiliation_strings":["Natural History Museum, University of Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0002-1972-1321","affiliations":[{"raw_affiliation_string":"Natural History Museum, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009595671","display_name":"Ruichen Lv","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405260518","display_name":"Beijing Institute of Microbiology and Epidemiology","ror":"https://ror.org/03w50ns22","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053","https://openalex.org/I4405260518"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruichen Lv","raw_affiliation_strings":["State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China","institution_ids":["https://openalex.org/I4405260518"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053825423","display_name":"Yujun Cui","orcid":"https://orcid.org/0000-0001-7236-2412","observed_orcids":["https://orcid.org/0000-0001-7236-2412"]},"institutions":[{"id":"https://openalex.org/I4405260518","display_name":"Beijing Institute of Microbiology and Epidemiology","ror":"https://ror.org/03w50ns22","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053","https://openalex.org/I4405260518"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yujun Cui","raw_affiliation_strings":["State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China","institution_ids":["https://openalex.org/I4405260518"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055435715","display_name":"Yajun Song","orcid":"https://orcid.org/0000-0002-6628-2747","observed_orcids":["https://orcid.org/0000-0002-6628-2747"]},"institutions":[{"id":"https://openalex.org/I4405260518","display_name":"Beijing Institute of Microbiology and Epidemiology","ror":"https://ror.org/03w50ns22","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053","https://openalex.org/I4405260518"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yajun Song","raw_affiliation_strings":["State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China","institution_ids":["https://openalex.org/I4405260518"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101940997","display_name":"Yujiang Zhang","orcid":"https://orcid.org/0000-0001-9436-2595","observed_orcids":["https://orcid.org/0000-0001-9436-2595"]},"institutions":[{"id":"https://openalex.org/I4210096184","display_name":"Xinjiang Uygur Autonomous Region Disease Prevention and Control Center","ror":"https://ror.org/00tt3wc55","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210096184"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yujiang Zhang","raw_affiliation_strings":["Xinjiang Center for Disease Control and Prevention, Urumqi, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xinjiang Center for Disease Control and Prevention, Urumqi, China","institution_ids":["https://openalex.org/I4210096184"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060754980","display_name":"Helle Tessand Baalsrud","orcid":"https://orcid.org/0000-0002-4161-3247","observed_orcids":["https://orcid.org/0000-0002-4161-3247"]},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Helle T Baalsrud","raw_affiliation_strings":["Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0002-4161-3247","affiliations":[{"raw_affiliation_string":"Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079242425","display_name":"Ole K. T\u00f8rresen","orcid":"https://orcid.org/0000-0002-1932-8212","observed_orcids":["https://orcid.org/0000-0002-1932-8212"]},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Ole K T\u00f8rresen","raw_affiliation_strings":["Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0002-1932-8212","affiliations":[{"raw_affiliation_string":"Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063347762","display_name":"Nils Chr. Stenseth","orcid":"https://orcid.org/0000-0002-1591-5399","observed_orcids":["https://orcid.org/0000-0002-1591-5399"]},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","NO"],"is_corresponding":false,"raw_author_name":"Nils Chr Stenseth","raw_affiliation_strings":["Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway","Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System Science, Tsinghua University, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0002-1591-5399","affiliations":[{"raw_affiliation_string":"Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System Science, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100693489","display_name":"Ruifu Yang","orcid":"https://orcid.org/0000-0003-3219-7269","observed_orcids":["https://orcid.org/0000-0003-3219-7269"]},"institutions":[{"id":"https://openalex.org/I4405260518","display_name":"Beijing Institute of Microbiology and Epidemiology","ror":"https://ror.org/03w50ns22","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053","https://openalex.org/I4405260518"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruifu Yang","raw_affiliation_strings":["State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0003-3219-7269","affiliations":[{"raw_affiliation_string":"State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China","institution_ids":["https://openalex.org/I4405260518"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019352680","display_name":"Kjetill S. Jakobsen","orcid":"https://orcid.org/0000-0002-8861-5397","observed_orcids":["https://orcid.org/0000-0002-8861-5397"]},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Kjetill S Jakobsen","raw_affiliation_strings":["Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0002-8861-5397","affiliations":[{"raw_affiliation_string":"Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060736779","display_name":"William Ryan Easterday","orcid":"https://orcid.org/0000-0001-5865-7062","observed_orcids":["https://orcid.org/0000-0001-5865-7062"]},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"William Ryan Easterday","raw_affiliation_strings":["Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0001-5865-7062","affiliations":[{"raw_affiliation_string":"Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075420061","display_name":"Sissel Jentoft","orcid":"https://orcid.org/0000-0001-8707-531X","observed_orcids":["https://orcid.org/0000-0001-8707-531X"]},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Sissel Jentoft","raw_affiliation_strings":["Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0001-8707-531X","affiliations":[{"raw_affiliation_string":"Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5044371388"],"corresponding_institution_ids":["https://openalex.org/I184942183"],"apc_list":{"value":2850,"currency":"USD","value_usd":2850},"apc_paid":{"value":2850,"currency":"USD","value_usd":2850},"fwci":0.2199,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.66838351,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":96},"biblio":{"volume":"12","issue":"2","first_page":"3832","last_page":"3849"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12232","display_name":"Yersinia bacterium, plague, ectoparasites research","score":0.420199990272522,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12232","display_name":"Yersinia bacterium, plague, ectoparasites research","score":0.420199990272522,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.18479999899864197,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.14869999885559082,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/great-gerbil","display_name":"great gerbil","score":0.9800000190734863},{"id":"https://openalex.org/keywords/rhombomys-opimus","display_name":"Rhombomys opimus","score":1.0},{"id":"https://openalex.org/keywords/yersinia-pestis","display_name":"Yersinia pestis","score":0.996999979019165},{"id":"https://openalex.org/keywords/tlr7","display_name":"TLR7","score":0.7329999804496765},{"id":"https://openalex.org/keywords/tlr9","display_name":"TLR9","score":0.9980000257492065},{"id":"https://openalex.org/keywords/peptide-binding-affinity","display_name":"peptide binding affinity","score":0.6859999895095825},{"id":"https://openalex.org/keywords/adaptive-immune-response","display_name":"adaptive immune response","score":0.7039999961853027},{"id":"https://openalex.org/keywords/zoonoses","display_name":"zoonoses","score":0.6830000281333923},{"id":"https://openalex.org/keywords/host-pathogen-interaction","display_name":"host-pathogen interaction","score":0.8169999718666077},{"id":"https://openalex.org/keywords/gerbils","display_name":"gerbils","score":0.7649999856948853},{"id":"https://openalex.org/keywords/genome-assembly","display_name":"genome assembly","score":0.7059999704360962}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9312464594841003},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6701868176460266},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5842028260231018},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5309309959411621},{"id":"https://openalex.org/C2778222588","wikidata":"https://www.wikidata.org/wiki/Q153875","display_name":"Yersinia pestis","level":4,"score":0.5127628445625305},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.49475377798080444},{"id":"https://openalex.org/C2780222073","wikidata":"https://www.wikidata.org/wiki/Q649817","display_name":"Gerbil","level":3,"score":0.4823834002017975},{"id":"https://openalex.org/C7602840","wikidata":"https://www.wikidata.org/wiki/Q746284","display_name":"Gene duplication","level":3,"score":0.4517847001552582},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.1476171910762787},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C164705383","wikidata":"https://www.wikidata.org/wiki/Q10379","display_name":"Cardiology","level":1,"score":0.0},{"id":"https://openalex.org/C541997718","wikidata":"https://www.wikidata.org/wiki/Q188151","display_name":"Ischemia","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000949","descriptor_name":"Histocompatibility Antigens Class II","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005849","descriptor_name":"Gerbillinae","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015007","descriptor_name":"Yersinia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020440","descriptor_name":"Gene Duplication","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D051199","descriptor_name":"Toll-Like Receptor 7","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051217","descriptor_name":"Toll-Like Receptor 9","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/gbe/evaa008","doi":"https://doi.org/10.1093/gbe/evaa008","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gbe/evaa008","pdf_url":"https://academic.oup.com/gbe/article-pdf/12/2/3832/32679870/evaa008.pdf","source":{"id":"https://openalex.org/S10195028","display_name":"Genome Biology and Evolution","issn_l":"1759-6653","issn":["1759-6653"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-d","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Biology and Evolution","raw_type":"journal-article"},{"id":"doi:10.1101/449553","doi":"https://doi.org/10.1101/449553","is_oa":true,"landing_page_url":"https://doi.org/10.1101/449553","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2018/10/31/449553.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmid:31971556","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31971556","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome biology and evolution","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7046166","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC7046166/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Biol Evol","raw_type":"Text"},{"id":"pmh:oai:www.duo.uio.no:10852/80642","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/10852/80642","pdf_url":null,"source":{"id":"https://openalex.org/S7407064446","display_name":"NORA - Norwegian Open Research Archives","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"1759-6653","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/gbe/evaa008","doi":"https://doi.org/10.1093/gbe/evaa008","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gbe/evaa008","pdf_url":"https://academic.oup.com/gbe/article-pdf/12/2/3832/32679870/evaa008.pdf","source":{"id":"https://openalex.org/S10195028","display_name":"Genome Biology and Evolution","issn_l":"1759-6653","issn":["1759-6653"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-d","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Biology and Evolution","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6240000128746033,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G2176488472","display_name":null,"funder_award_id":"179569","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G4629964940","display_name":null,"funder_award_id":"152950","funder_id":"https://openalex.org/F4320323260","funder_display_name":"Universitetet i Oslo"},{"id":"https://openalex.org/G5279028829","display_name":null,"funder_award_id":"288551","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G7089106965","display_name":"\u9f20\u75ab\u83cc\u81f4\u75c5\u6027\u548c\u4f20\u64ad\u6027\u7684\u9057\u4f20\u57fa\u7840\uff1a\u8d28\u7c92\u83b7\u5f97\u4e0e\u57fa\u56e0\u8c03\u63a7\u91cd\u5851","funder_award_id":"31430006","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7503134977","display_name":null,"funder_award_id":"324249\u2014MedPlag","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"}],"funders":[{"id":"https://openalex.org/F4320310638","display_name":"McGill University","ror":"https://ror.org/01pxwe438"},{"id":"https://openalex.org/F4320316921","display_name":"Norwegian Sequencing Centre","ror":"https://ror.org/01xcamc49"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320323260","display_name":"Universitetet i Oslo","ror":"https://ror.org/01xtthb56"},{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"},{"id":"https://openalex.org/F4320332162","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3000873225.pdf","grobid_xml":"https://content.openalex.org/works/W3000873225.grobid-xml"},"referenced_works_count":121,"referenced_works":["https://openalex.org/W9307905","https://openalex.org/W85015336","https://openalex.org/W573880598","https://openalex.org/W1520434148","https://openalex.org/W1579928530","https://openalex.org/W1803102843","https://openalex.org/W1891980138","https://openalex.org/W1971991652","https://openalex.org/W1972689377","https://openalex.org/W1972714962","https://openalex.org/W1973659410","https://openalex.org/W1976844960","https://openalex.org/W1977149908","https://openalex.org/W1979900969","https://openalex.org/W1983304589","https://openalex.org/W1983470819","https://openalex.org/W1985132141","https://openalex.org/W1985178609","https://openalex.org/W1997763763","https://openalex.org/W1999561988","https://openalex.org/W2004681511","https://openalex.org/W2007372848","https://openalex.org/W2008472051","https://openalex.org/W2018205430","https://openalex.org/W2022986961","https://openalex.org/W2024015921","https://openalex.org/W2024311047","https://openalex.org/W2028145763","https://openalex.org/W2029376095","https://openalex.org/W2032243072","https://openalex.org/W2036897871","https://openalex.org/W2037412015","https://openalex.org/W2045303929","https://openalex.org/W2048912867","https://openalex.org/W2066513493","https://openalex.org/W2067677689","https://openalex.org/W2072617582","https://openalex.org/W2073621589","https://openalex.org/W2075097033","https://openalex.org/W2076617993","https://openalex.org/W2084681445","https://openalex.org/W2087088909","https://openalex.org/W2087805108","https://openalex.org/W2098185359","https://openalex.org/W2099753867","https://openalex.org/W2101786683","https://openalex.org/W2107903924","https://openalex.org/W2108476380","https://openalex.org/W2109491705","https://openalex.org/W2110155683","https://openalex.org/W2111260918","https://openalex.org/W2114372919","https://openalex.org/W2114950044","https://openalex.org/W2117140617","https://openalex.org/W2118982822","https://openalex.org/W2119904585","https://openalex.org/W2120772351","https://openalex.org/W2120878857","https://openalex.org/W2123707618","https://openalex.org/W2126147958","https://openalex.org/W2127832297","https://openalex.org/W2129643405","https://openalex.org/W2133514124","https://openalex.org/W2133894706","https://openalex.org/W2138049915","https://openalex.org/W2138870543","https://openalex.org/W2139354660","https://openalex.org/W2139415038","https://openalex.org/W2140028978","https://openalex.org/W2141157287","https://openalex.org/W2146099217","https://openalex.org/W2146751481","https://openalex.org/W2155628349","https://openalex.org/W2155680168","https://openalex.org/W2156811746","https://openalex.org/W2159957100","https://openalex.org/W2160378127","https://openalex.org/W2161444534","https://openalex.org/W2164367209","https://openalex.org/W2168105659","https://openalex.org/W2168696662","https://openalex.org/W2171217032","https://openalex.org/W2171780940","https://openalex.org/W2173447488","https://openalex.org/W2187272585","https://openalex.org/W2228489023","https://openalex.org/W2268050280","https://openalex.org/W2269278414","https://openalex.org/W2304412599","https://openalex.org/W2311203695","https://openalex.org/W2312149817","https://openalex.org/W2327741961","https://openalex.org/W2342855510","https://openalex.org/W2528973436","https://openalex.org/W2529591325","https://openalex.org/W2550952538","https://openalex.org/W2598469345","https://openalex.org/W2600554735","https://openalex.org/W2608171249","https://openalex.org/W2611511275","https://openalex.org/W2625672440","https://openalex.org/W2726879832","https://openalex.org/W2737371096","https://openalex.org/W2745440453","https://openalex.org/W2752506773","https://openalex.org/W2770031047","https://openalex.org/W2781938185","https://openalex.org/W2783102765","https://openalex.org/W2789446990","https://openalex.org/W2800720711","https://openalex.org/W2802731882","https://openalex.org/W2803181978","https://openalex.org/W2884228113","https://openalex.org/W2952265542","https://openalex.org/W2952358323","https://openalex.org/W2991803249","https://openalex.org/W3148885000","https://openalex.org/W6747249413","https://openalex.org/W6753358958","https://openalex.org/W7049031392","https://openalex.org/W7140246363"],"related_works":["https://openalex.org/W4298005244","https://openalex.org/W1972714962","https://openalex.org/W3005711071","https://openalex.org/W2161246340","https://openalex.org/W3025105487","https://openalex.org/W2113619684","https://openalex.org/W3130186373","https://openalex.org/W2084681445","https://openalex.org/W2038841449","https://openalex.org/W2166857813"],"abstract_inverted_index":{"Abstract":[0],"The":[1],"great":[2,50,114,179],"gerbil":[3,76,180],"(Rhombomys":[4],"opimus)":[5],"is":[6],"a":[7,43,113],"social":[8],"rodent":[9],"living":[10],"in":[11],"permanent,":[12],"complex":[13],"burrow":[14],"systems":[15],"distributed":[16],"throughout":[17],"Central":[18],"Asia,":[19],"where":[20],"it":[21],"serves":[22],"as":[23,138,140],"the":[24,34,49,56,63,68,74,94,118,127,159,174,178],"main":[25],"host":[26],"of":[27,48,55,62,67,102,105,117,161,177],"several":[28],"important":[29],"vector-borne":[30],"infectious":[31],"pathogens":[32],"including":[33],"well-known":[35],"plague":[36],"bacterium":[37],"(Yersinia":[38],"pestis).":[39],"Here,":[40],"we":[41,111],"present":[42],"continuous":[44],"annotated":[45],"genome":[46,65],"assembly":[47],"gerbil,":[51],"covering":[52],"over":[53],"96%":[54],"estimated":[57],"2.47-Gb":[58],"genome.":[59],"Taking":[60],"advantage":[61],"recent":[64],"assemblies":[66],"sand":[69],"rat":[70],"(Psammomys":[71],"obesus)":[72],"and":[73,93,107,142,181],"Mongolian":[75],"(Meriones":[77],"unguiculatus),":[78],"comparative":[79,166],"immunogenomic":[80,175],"analyses":[81,124,168],"reveal":[82],"shared":[83],"gene":[84,88,129],"losses":[85],"within":[86],"TLR":[87],"families":[89],"(i.e.,":[90],"TLR8,":[91],"TLR10,":[92],"entire":[95],"TLR11-subfamily)":[96],"for":[97,135],"Gerbillinae,":[98],"accompanied":[99],"with":[100,165],"signs":[101],"diversifying":[103],"selection":[104],"TLR7":[106],"TLR9.":[108],"Most":[109],"notably,":[110],"find":[112],"gerbil-specific":[115],"duplication":[116],"MHCII":[119],"DRB":[120],"locus.":[121],"In":[122],"silico":[123],"suggest":[125],"that":[126],"duplicated":[128],"provides":[130],"high":[131],"peptide":[132],"binding":[133],"affinity":[134],"Yersiniae":[136],"epitopes":[137],"well":[139],"Leishmania":[141],"Leptospira":[143],"epitopes,":[144],"putatively":[145],"leading":[146],"to":[147,150,169],"increased":[148],"capability":[149],"withstand":[151],"infections":[152],"by":[153],"these":[154],"pathogens.":[155],"Our":[156],"study":[157],"demonstrates":[158],"power":[160],"whole-genome":[162],"sequencing":[163],"combined":[164],"genomic":[167],"gain":[170],"deeper":[171],"insight":[172],"into":[173],"landscape":[176],"its":[182],"close":[183],"relatives.":[184]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-11-12T12:28:57.059296","created_date":"2020-01-30T00:00:00"}
