{"id":"https://openalex.org/W2995175648","doi":"https://doi.org/10.1093/bib/bbz153","title":"Improving drug response prediction by integrating multiple data sources: matrix factorization, kernel and network-based approaches","display_name":"Improving drug response prediction by integrating multiple data sources: matrix factorization, kernel and network-based approaches","publication_year":2019,"publication_date":"2019-11-11","ids":{"openalex":"https://openalex.org/W2995175648","doi":"https://doi.org/10.1093/bib/bbz153","mag":"2995175648","pmid":"https://pubmed.ncbi.nlm.nih.gov/31838491","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/7820853"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbz153","doi":"https://doi.org/10.1093/bib/bbz153","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbz153","pdf_url":"https://academic.oup.com/bib/article-pdf/22/1/346/35934964/bbz153.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["ccf-b","cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/22/1/346/35934964/bbz153.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5106953857","display_name":"Bet\u00fcl G\u00fcven\u00e7 Paltun","orcid":"https://orcid.org/0000-0002-7871-0980","observed_orcids":["https://orcid.org/0000-0002-7871-0980"]},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Bet\u00fcl G\u00fcven\u00e7 Paltun","raw_affiliation_strings":["Department of Computer Science, Helsinki Institute for Information Technology HIIT, Aalto University, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Helsinki Institute for Information Technology HIIT, Aalto University, Helsinki, Finland","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059001924","display_name":"Hiroshi Mamitsuka","orcid":"https://orcid.org/0000-0002-6607-5617","observed_orcids":["https://orcid.org/0000-0002-6607-5617"]},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":"JP","type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hiroshi Mamitsuka","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018305257","display_name":"Samuel Kaski A","orcid":"https://orcid.org/0000-0003-1925-9154","observed_orcids":["https://orcid.org/0000-0003-1925-9154"]},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":"JP","type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Samuel Kaski","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5106953857"],"corresponding_institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":{"value":2702,"currency":"EUR","value_usd":2914},"fwci":3.021,"has_fulltext":true,"cited_by_count":76,"citation_normalized_percentile":{"value":0.93451699,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"22","issue":"1","first_page":"346","last_page":"359"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/3002","display_name":"Drug Discovery"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/3002","display_name":"Drug Discovery"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0031999999191612005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-response-prediction","display_name":"drug response prediction","score":0.9980000257492065},{"id":"https://openalex.org/keywords/cancer-cell-lines","display_name":"cancer cell lines","score":0.8960000276565552},{"id":"https://openalex.org/keywords/drug-sensitivity","display_name":"drug sensitivity","score":0.8930000066757202},{"id":"https://openalex.org/keywords/personalized-medicine","display_name":"personalized medicine","score":0.6779999732971191},{"id":"https://openalex.org/keywords/data-integration","display_name":"data integration","score":0.6980000138282776},{"id":"https://openalex.org/keywords/heterogeneous-biological-data","display_name":"heterogeneous biological data","score":0.8510000109672546},{"id":"https://openalex.org/keywords/matrix-factorization","display_name":"matrix factorization","score":0.9990000128746033},{"id":"https://openalex.org/keywords/kernel-methods","display_name":"kernel methods","score":0.9779999852180481},{"id":"https://openalex.org/keywords/network-based-methods","display_name":"network-based methods","score":0.972000002861023}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6799605488777161},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.57820725440979},{"id":"https://openalex.org/C42355184","wikidata":"https://www.wikidata.org/wiki/Q1361088","display_name":"Matrix decomposition","level":3,"score":0.5043972730636597},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42846131324768066},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4239409863948822},{"id":"https://openalex.org/C187834632","wikidata":"https://www.wikidata.org/wiki/Q188804","display_name":"Factorization","level":2,"score":0.41507551074028015},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.39451825618743896},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.23105835914611816},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2154920995235443},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C158693339","wikidata":"https://www.wikidata.org/wiki/Q190524","display_name":"Eigenvalues and eigenvectors","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071184","descriptor_name":"Pharmacogenomic Variants","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019008","descriptor_name":"Drug Resistance, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bib/bbz153","doi":"https://doi.org/10.1093/bib/bbz153","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbz153","pdf_url":"https://academic.oup.com/bib/article-pdf/22/1/346/35934964/bbz153.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["ccf-b","cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:6746381","doi":null,"is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7820853","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7820853","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7820853","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmid:31838491","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31838491","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pure.atira.dk:openaire/1fea3435-be03-4d70-8f91-7874a7e06ba9","doi":null,"is_oa":true,"landing_page_url":"https://research.manchester.ac.uk/en/publications/1fea3435-be03-4d70-8f91-7874a7e06ba9","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Guvenc, B, Mamitsuka, H & Kaski, S 2021, 'Improving drug response prediction by integrating multiple data sources: matrix factorization, kernel and network-based approaches', Briefings in Bioinformatics, vol. 22, no. 1, pp. 346-359. https://doi.org/10.1093/bib/bbz153","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:aaltodoc.aalto.fi:123456789/42940","doi":null,"is_oa":true,"landing_page_url":"https://research.aalto.fi/en/publications/b40332e5-cd80-4ae4-98ff-658fbdf5f26e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401662","display_name":"Aaltodoc (Aalto University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I9927081","host_organization_name":"Aalto University","host_organization_lineage":["https://openalex.org/I9927081"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"A1 Alkuper\u00e4isartikkeli tieteellisess\u00e4 aikakauslehdess\u00e4"}],"best_oa_location":{"id":"doi:10.1093/bib/bbz153","doi":"https://doi.org/10.1093/bib/bbz153","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbz153","pdf_url":"https://academic.oup.com/bib/article-pdf/22/1/346/35934964/bbz153.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["ccf-b","cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.6240000128746033}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1647247481","display_name":null,"funder_award_id":"1718/31/2014","funder_id":"https://openalex.org/F4320328501","funder_display_name":"Business Finland"},{"id":"https://openalex.org/G3289600170","display_name":null,"funder_award_id":"19H04169","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G431525478","display_name":null,"funder_award_id":"JPMJAC1503","funder_id":"https://openalex.org/F4320320907","funder_display_name":"Japan Science and Technology Corporation"},{"id":"https://openalex.org/G471215394","display_name":"Efficient estimation of data structure from multiple tensors","funder_award_id":"19H04169","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4892498013","display_name":null,"funder_award_id":"315896","funder_id":"https://openalex.org/F4320328501","funder_display_name":"Business Finland"},{"id":"https://openalex.org/G5527349350","display_name":null,"funder_award_id":"315896","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G5997710061","display_name":"Estimating the factor structure in multiple matrices","funder_award_id":"16H02868","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G6642769225","display_name":null,"funder_award_id":"JPMJAC1503","funder_id":"https://openalex.org/F4320338113","funder_display_name":"Accelerated Innovation Research Initiative Turning Top Science and Ideas into High-Impact Values"},{"id":"https://openalex.org/G725548817","display_name":null,"funder_award_id":"320181","funder_id":"https://openalex.org/F4320332050","funder_display_name":"Finnish Center for Artificial Intelligence"},{"id":"https://openalex.org/G7347817016","display_name":null,"funder_award_id":"16H02868","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320320907","display_name":"Japan Science and Technology Corporation","ror":"https://ror.org/00097mb19"},{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"},{"id":"https://openalex.org/F4320328501","display_name":"Business Finland","ror":"https://ror.org/05bgf9v38"},{"id":"https://openalex.org/F4320332050","display_name":"Finnish Center for Artificial Intelligence","ror":"https://ror.org/0321d1h15"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320338113","display_name":"Accelerated Innovation Research Initiative Turning Top Science and Ideas into High-Impact Values","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2995175648.pdf","grobid_xml":"https://content.openalex.org/works/W2995175648.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W19078547","https://openalex.org/W1482422241","https://openalex.org/W1494567425","https://openalex.org/W1872239493","https://openalex.org/W1986087295","https://openalex.org/W1998898494","https://openalex.org/W2004638738","https://openalex.org/W2005314755","https://openalex.org/W2018663224","https://openalex.org/W2043398720","https://openalex.org/W2047708582","https://openalex.org/W2057545775","https://openalex.org/W2087312216","https://openalex.org/W2091118421","https://openalex.org/W2091758060","https://openalex.org/W2108068107","https://openalex.org/W2108933868","https://openalex.org/W2114759909","https://openalex.org/W2120204563","https://openalex.org/W2128686067","https://openalex.org/W2129860849","https://openalex.org/W2130336429","https://openalex.org/W2140141449","https://openalex.org/W2149775989","https://openalex.org/W2159482845","https://openalex.org/W2159887157","https://openalex.org/W2162422091","https://openalex.org/W2163485494","https://openalex.org/W2167453047","https://openalex.org/W2175970000","https://openalex.org/W2177317049","https://openalex.org/W2183717576","https://openalex.org/W2197241765","https://openalex.org/W2220553089","https://openalex.org/W2295182096","https://openalex.org/W2320656788","https://openalex.org/W2432718434","https://openalex.org/W2461427403","https://openalex.org/W2473876819","https://openalex.org/W2501016862","https://openalex.org/W2508784321","https://openalex.org/W2513942179","https://openalex.org/W2554401505","https://openalex.org/W2567080747","https://openalex.org/W2569335714","https://openalex.org/W2604738573","https://openalex.org/W2624701078","https://openalex.org/W2735647642","https://openalex.org/W2742007096","https://openalex.org/W2745791324","https://openalex.org/W2751088916","https://openalex.org/W2767593474","https://openalex.org/W2775061087","https://openalex.org/W2777794149","https://openalex.org/W2800850886","https://openalex.org/W2802392588","https://openalex.org/W2805406480","https://openalex.org/W2806887204","https://openalex.org/W2808199968","https://openalex.org/W2887685819","https://openalex.org/W2893531376","https://openalex.org/W2921591500","https://openalex.org/W2948897453","https://openalex.org/W2950063908","https://openalex.org/W2950182476","https://openalex.org/W2955502047","https://openalex.org/W2962839146","https://openalex.org/W2965750004","https://openalex.org/W4244364296","https://openalex.org/W4246105018","https://openalex.org/W4294216483","https://openalex.org/W6664859286"],"related_works":["https://openalex.org/W2432718434","https://openalex.org/W2805406480","https://openalex.org/W3000373012","https://openalex.org/W2809143981","https://openalex.org/W2733868443","https://openalex.org/W2278505709","https://openalex.org/W4386046819","https://openalex.org/W2735647642","https://openalex.org/W4306790244","https://openalex.org/W4205500224"],"abstract_inverted_index":{"Predicting":[0],"the":[1,13,20,66,90,170],"response":[2,120,147],"of":[3,12,31,69,82,92,138,156,172],"cancer":[4,83],"cell":[5,21,40],"lines":[6,22],"to":[7,34],"specific":[8],"drugs":[9,38],"is":[10,65,77],"one":[11],"central":[14],"problems":[15,91],"in":[16,72,98,113,145,159],"personalized":[17,73],"medicine,":[18],"where":[19],"show":[23],"diverse":[24],"characteristics.":[25],"Researchers":[26],"have":[27],"developed":[28],"a":[29,135,143,153],"variety":[30],"computational":[32],"methods":[33,58,86,124],"discover":[35],"associations":[36],"between":[37],"and":[39,42,57,84,101,129,161],"lines,":[41],"improved":[43],"drug":[44,119,146,179],"sensitivity":[45,180],"analyses":[46],"by":[47,122,151,182],"integrating":[48,93,160],"heterogeneous":[49,175],"biological":[50],"data.":[51],"However,":[52],"choosing":[53],"informative":[54],"data":[55,99,102,114,163,176],"sources":[56,63,177],"that":[59,78,87],"can":[60,88],"incorporate":[61],"multiple":[62,165,174],"efficiently":[64],"challenging":[67],"part":[68],"successful":[70],"analysis":[71,181],"medicine.":[74],"The":[75],"reason":[76],"finding":[79],"decisive":[80],"factors":[81],"developing":[85],"overcome":[89],"data,":[94],"such":[95],"as":[96,125,142],"differences":[97],"structures":[100],"complexities,":[103],"are":[104],"difficult.":[105],"In":[106],"this":[107],"review,":[108],"we":[109,168],"summarize":[110],"recent":[111],"advances":[112],"integration-based":[115],"machine":[116],"learning":[117],"for":[118],"prediction,":[121],"categorizing":[123],"matrix":[126],"factorization-based,":[127],"kernel-based":[128],"network-based":[130],"methods.":[131],"We":[132],"also":[133],"present":[134],"short":[136],"description":[137],"relevant":[139],"databases":[140],"used":[141],"benchmark":[144],"prediction":[148],"analyses,":[149],"followed":[150],"providing":[152],"brief":[154],"discussion":[155],"challenges":[157],"faced":[158],"interpreting":[162],"from":[164],"sources.":[166],"Finally,":[167],"address":[169],"advantages":[171],"combining":[173],"on":[178],"showing":[183],"an":[184],"experimental":[185],"comparison.":[186],"Contact:":[187],"betul.guvenc@aalto.fi.":[188]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":5}],"updated_date":"2026-11-06T12:05:46.655746","created_date":"2019-12-26T00:00:00"}
