{"id":"https://openalex.org/W2994736111","doi":"https://doi.org/10.1111/zph.12679","title":"Genetic diversity of influenza A viruses circulating in pigs between winter and summer in a Minnesota live animal market","display_name":"Genetic diversity of influenza A viruses circulating in pigs between winter and summer in a Minnesota live animal market","publication_year":2019,"publication_date":"2019-12-23","ids":{"openalex":"https://openalex.org/W2994736111","doi":"https://doi.org/10.1111/zph.12679","mag":"2994736111","pmid":"https://pubmed.ncbi.nlm.nih.gov/31868300"},"language":"en","primary_location":{"id":"doi:10.1111/zph.12679","doi":"https://doi.org/10.1111/zph.12679","is_oa":false,"landing_page_url":"https://doi.org/10.1111/zph.12679","pdf_url":null,"source":{"id":"https://openalex.org/S46899502","display_name":"Zoonoses and Public Health","issn_l":"1863-1959","issn":["1863-1959","1863-2378"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","jufo-2","ki-jl-2","medline","norway-2","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Zoonoses and Public Health","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013946239","display_name":"Jayaveeramuthu Nirmala","orcid":"https://orcid.org/0000-0002-1074-1342","observed_orcids":["https://orcid.org/0000-0002-1074-1342"]},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jayaveeramuthu Nirmala","raw_affiliation_strings":["Veterinary Population Medicine Department, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA"],"raw_orcid":"https://orcid.org/0000-0002-1074-1342","affiliations":[{"raw_affiliation_string":"Veterinary Population Medicine Department, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033948476","display_name":"Jeff B. Bender","orcid":"https://orcid.org/0000-0003-4645-9936","observed_orcids":["https://orcid.org/0000-0003-4645-9936"]},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeff B. Bender","raw_affiliation_strings":["School of Public Health, Environmental Health Sciences, University of Minnesota, Minneapolis, MN, USA","Veterinary Population Medicine Department, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Public Health, Environmental Health Sciences, University of Minnesota, Minneapolis, MN, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"Veterinary Population Medicine Department, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011151803","display_name":"Ruth Lynfield","orcid":"https://orcid.org/0000-0002-7741-1284","observed_orcids":["https://orcid.org/0000-0002-7741-1284"]},"institutions":[{"id":"https://openalex.org/I4210144997","display_name":"Minnesota Department of Health","ror":"https://ror.org/04g43x563","country_code":"US","type":"government","lineage":["https://openalex.org/I4210144997"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruth Lynfield","raw_affiliation_strings":["Minnesota State Health Department, St. Paul, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Minnesota State Health Department, St. Paul, MN, USA","institution_ids":["https://openalex.org/I4210144997"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101956454","display_name":"My Yang","orcid":"https://orcid.org/0000-0002-1877-2653","observed_orcids":["https://orcid.org/0000-0002-1877-2653"]},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"My Yang","raw_affiliation_strings":["Veterinary Population Medicine Department, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Veterinary Population Medicine Department, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047891766","display_name":"Marie Rene Culhane","orcid":"https://orcid.org/0000-0002-3547-7576","observed_orcids":["https://orcid.org/0000-0002-3547-7576"]},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marie Rene Culhane","raw_affiliation_strings":["Veterinary Population Medicine Department, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Veterinary Population Medicine Department, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028294646","display_name":"Martha I. Nelson","orcid":"https://orcid.org/0000-0003-4814-0179","observed_orcids":["https://orcid.org/0000-0003-4814-0179"]},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I874236823","display_name":"Fogarty International Center","ror":"https://ror.org/02xey9a22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I874236823"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martha Irene Nelson","raw_affiliation_strings":["Fogarty International Center, National Institutes of Health, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fogarty International Center, National Institutes of Health, Bethesda, MD, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I874236823"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065889932","display_name":"Srinand Sreevatsan","orcid":"https://orcid.org/0000-0002-5162-2403","observed_orcids":["https://orcid.org/0000-0002-5162-2403"]},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Srinand Sreevatsan","raw_affiliation_strings":["Department of Pathobiology and Diagnostic Investigation, Michigan State University, East Lansing, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathobiology and Diagnostic Investigation, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056920671","display_name":"Montserrat Torremorell","orcid":"https://orcid.org/0000-0002-9626-6537","observed_orcids":["https://orcid.org/0000-0002-9626-6537"]},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Montserrat Torremorell","raw_affiliation_strings":["Veterinary Population Medicine Department, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA"],"raw_orcid":"https://orcid.org/0000-0002-9626-6537","affiliations":[{"raw_affiliation_string":"Veterinary Population Medicine Department, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA","institution_ids":["https://openalex.org/I130238516"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5056920671"],"corresponding_institution_ids":["https://openalex.org/I130238516"],"apc_list":{"value":4200,"currency":"USD","value_usd":4200},"apc_paid":null,"fwci":0.3806,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.65017933,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":96},"biblio":{"volume":"67","issue":"3","first_page":"243","last_page":"250"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11135","display_name":"Virology and Viral Diseases","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11560","display_name":"Animal Disease Management and Epidemiology","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1102","display_name":"Agronomy and Crop Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/influenza-a-virus","display_name":"influenza A virus","score":0.9490000009536743},{"id":"https://openalex.org/keywords/pigs","display_name":"pigs","score":0.8989999890327454},{"id":"https://openalex.org/keywords/live-animal-markets","display_name":"live animal markets","score":0.9679999947547913},{"id":"https://openalex.org/keywords/genetic-diversity","display_name":"genetic diversity","score":0.8799999952316284},{"id":"https://openalex.org/keywords/seasonal-variation","display_name":"seasonal variation","score":0.7620000243186951},{"id":"https://openalex.org/keywords/h3n2","display_name":"H3N2","score":0.9350000023841858},{"id":"https://openalex.org/keywords/h1n2","display_name":"H1N2","score":0.9990000128746033},{"id":"https://openalex.org/keywords/airborne-transmission","display_name":"airborne transmission","score":0.5239999890327454},{"id":"https://openalex.org/keywords/environmental-contamination","display_name":"environmental contamination","score":0.5400000214576721},{"id":"https://openalex.org/keywords/phylogenetic-analysis","display_name":"phylogenetic analysis","score":0.7129999995231628},{"id":"https://openalex.org/keywords/zoonotic-transmission","display_name":"zoonotic transmission","score":0.6959999799728394},{"id":"https://openalex.org/keywords/minnesota","display_name":"Minnesota","score":0.5600000023841858}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.590191125869751},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.5794312953948975},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.5413944125175476},{"id":"https://openalex.org/C42972112","wikidata":"https://www.wikidata.org/wiki/Q170201","display_name":"Veterinary medicine","level":1,"score":0.47060853242874146},{"id":"https://openalex.org/C519248777","wikidata":"https://www.wikidata.org/wiki/Q160122","display_name":"Influenza A virus subtype H5N1","level":3,"score":0.4122292697429657},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.2714025378227234},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.24192601442337036},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.13814592361450195},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.0759783387184143}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003132","descriptor_name":"Commerce","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008910","descriptor_name":"Minnesota","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D009976","descriptor_name":"Orthomyxoviridae Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D009976","descriptor_name":"Orthomyxoviridae Infections","qualifier_ui":"Q000662","qualifier_name":"veterinary","is_major_topic":true},{"descriptor_ui":"D009976","descriptor_name":"Orthomyxoviridae Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011159","descriptor_name":"Population Surveillance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012621","descriptor_name":"Seasons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013552","descriptor_name":"Swine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013553","descriptor_name":"Swine Diseases","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D013553","descriptor_name":"Swine Diseases","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1111/zph.12679","doi":"https://doi.org/10.1111/zph.12679","is_oa":false,"landing_page_url":"https://doi.org/10.1111/zph.12679","pdf_url":null,"source":{"id":"https://openalex.org/S46899502","display_name":"Zoonoses and Public Health","issn_l":"1863-1959","issn":["1863-1959","1863-2378"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","jufo-2","ki-jl-2","medline","norway-2","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Zoonoses and Public Health","raw_type":"journal-article"},{"id":"pmid:31868300","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31868300","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Zoonoses and public health","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7246000170707703,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"},{"score":0.5666999816894531,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1519266993","https://openalex.org/W1526257973","https://openalex.org/W1527573196","https://openalex.org/W1575197326","https://openalex.org/W1910660932","https://openalex.org/W1934705698","https://openalex.org/W1968150657","https://openalex.org/W1974482909","https://openalex.org/W1982116029","https://openalex.org/W1991321510","https://openalex.org/W2014649210","https://openalex.org/W2044291613","https://openalex.org/W2047971994","https://openalex.org/W2061397586","https://openalex.org/W2074252992","https://openalex.org/W2074756828","https://openalex.org/W2075665110","https://openalex.org/W2096363304","https://openalex.org/W2108234281","https://openalex.org/W2111211467","https://openalex.org/W2113485374","https://openalex.org/W2131155472","https://openalex.org/W2134884409","https://openalex.org/W2135659478","https://openalex.org/W2142653169","https://openalex.org/W2149788086","https://openalex.org/W2151429486","https://openalex.org/W2154613212","https://openalex.org/W2158073495","https://openalex.org/W2165945861","https://openalex.org/W2167692034","https://openalex.org/W2170551349","https://openalex.org/W2231029247","https://openalex.org/W2495667095","https://openalex.org/W2526880558","https://openalex.org/W2749767152","https://openalex.org/W4244725981"],"related_works":["https://openalex.org/W3011197941","https://openalex.org/W2726252279","https://openalex.org/W2113485374","https://openalex.org/W2539289047","https://openalex.org/W3153374630","https://openalex.org/W7135173117","https://openalex.org/W4413209614","https://openalex.org/W4413694624","https://openalex.org/W4386526195","https://openalex.org/W4405422018"],"abstract_inverted_index":{"There":[0],"has":[1],"been":[2,56],"little":[3],"surveillance":[4,29],"of":[5,30,68,87,103,150,158,162,204],"influenza":[6,61],"A":[7],"viruses":[8,135],"(IAVs)":[9],"circulating":[10,208],"in":[11,18,32,45,50,63,74,92,107,115,127,188,209,211],"swine":[12,75,210],"at":[13],"live":[14,47,212],"animal":[15,48,213],"markets,":[16,214],"particularly":[17],"the":[19,34,37,93,108,123,175,189,202,220],"United":[20],"States.":[21],"To":[22],"address":[23],"this":[24],"gap,":[25],"we":[26],"conducted":[27],"active":[28],"IAVs":[31,184],"pigs,":[33],"air,":[35],"and":[36,42,77,83,99,118,145,168,177,219],"environment":[38],"during":[39,80,97,112,216],"a":[40,46,148],"summer":[41,82,98,113,167,176,217],"winter":[43,84,116,144,172,178],"season":[44],"market":[49],"St.":[51],"Paul,":[52],"Minnesota,":[53],"that":[54,174],"had":[55],"epidemiologically":[57],"associated":[58],"with":[59,136,147],"swine-origin":[60],"cases":[62],"humans":[64],"previously.":[65],"High":[66],"rates":[67,102],"IAV":[69,88,205],"were":[70,95,110,140,180],"detected":[71],"by":[72,90,131],"PCR":[73,91],"lungs":[76],"oral":[78],"fluids":[79],"both":[81,128,143],"seasons.":[85],"Rates":[86],"detection":[89],"air":[94,109],"similar":[96],"winter,":[100],"although":[101],"successful":[104],"virus":[105,164],"isolation":[106],"lower":[111],"than":[114],"(26%":[117],"67%,":[119],"respectively).":[120],"H3N2":[121],"was":[122],"most":[124],"prevalent":[125],"subtype":[126],"seasons,":[129],"followed":[130],"H1N2.":[132],"Genetically":[133],"diverse":[134],"multiple":[137],"gene":[138],"constellations":[139],"isolated":[141],"from":[142,166,171,196],"summer,":[146],"total":[149],"19":[151],"distinct":[152],"genotypes":[153],"identified.":[154],"Comparative":[155],"phylogenetic":[156],"analysis":[157],"all":[159],"eight":[160],"segments":[161],"40":[163],"isolates":[165,170,179],"122":[169],"revealed":[173],"genetically":[181],"distinct,":[182],"indicating":[183],"are":[185,193],"not":[186],"maintained":[187],"market,":[190],"but":[191],"rather":[192],"re-introduced,":[194],"likely":[195],"commercial":[197],"swine.":[198],"These":[199],"findings":[200],"highlight":[201],"extent":[203],"genetic":[206],"diversity":[207],"even":[215],"months,":[218],"ongoing":[221],"risk":[222],"to":[223],"humans.":[224]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2019-12-26T00:00:00"}
