{"id":"https://openalex.org/W2992625680","doi":"https://doi.org/10.1111/ppa.13128","title":"Polyphasic phenotypic and genetic analysis reveals clonal nature of Xanthomonas axonopodis pv. punicae causing pomegranate bacterial blight","display_name":"Polyphasic phenotypic and genetic analysis reveals clonal nature of Xanthomonas axonopodis pv. punicae causing pomegranate bacterial blight","publication_year":2019,"publication_date":"2019-12-02","ids":{"openalex":"https://openalex.org/W2992625680","doi":"https://doi.org/10.1111/ppa.13128","mag":"2992625680"},"language":"en","primary_location":{"id":"doi:10.1111/ppa.13128","doi":"https://doi.org/10.1111/ppa.13128","is_oa":false,"landing_page_url":"https://doi.org/10.1111/ppa.13128","pdf_url":null,"source":{"id":"https://openalex.org/S63107127","display_name":"Plant Pathology","issn_l":"0032-0862","issn":["0032-0862","1365-3059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","jufo-2","ki-jl-2","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Pathology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000783902","display_name":"Aundy Kumar","orcid":"https://orcid.org/0000-0002-7401-9885","observed_orcids":["https://orcid.org/0000-0002-7401-9885"]},"institutions":[{"id":"https://openalex.org/I45509622","display_name":"Indian Agricultural Research Institute","ror":"https://ror.org/01bzgdw81","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I45509622"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"A. Kumar","raw_affiliation_strings":["Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi, India"],"raw_orcid":"https://orcid.org/0000-0002-7401-9885","affiliations":[{"raw_affiliation_string":"Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi, India","institution_ids":["https://openalex.org/I45509622"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017655719","display_name":"Jyotsana Sharma","orcid":"https://orcid.org/0000-0003-4546-5138","observed_orcids":["https://orcid.org/0000-0003-4546-5138"]},"institutions":[{"id":"https://openalex.org/I179420787","display_name":"Indian Council of Agricultural Research","ror":"https://ror.org/04fw54a43","country_code":"IN","type":"government","lineage":["https://openalex.org/I179420787"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"J. Sharma","raw_affiliation_strings":["ICAR-National Research Centre on Pomegranate, Solapur, Maharashtra, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICAR-National Research Centre on Pomegranate, Solapur, Maharashtra, India","institution_ids":["https://openalex.org/I179420787"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002061911","display_name":"Vibhuti Munjal","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I45509622","display_name":"Indian Agricultural Research Institute","ror":"https://ror.org/01bzgdw81","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I45509622"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"V. Munjal","raw_affiliation_strings":["Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi, India","institution_ids":["https://openalex.org/I45509622"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113277178","display_name":"Kausalya Sakthivel","orcid":"https://orcid.org/0009-0008-5490-5135","observed_orcids":["https://orcid.org/0009-0008-5490-5135"]},"institutions":[{"id":"https://openalex.org/I4210151296","display_name":"ICAR - Central Island Agricultural Research Institute","ror":"https://ror.org/03rsgdh53","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I4210151296"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"K. Sakthivel","raw_affiliation_strings":["Division of Field Crop Improvement and Protection, Central Island Agricultural Research Institute, Port Blair 744 101, Andaman and Nicobar Islands, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Field Crop Improvement and Protection, Central Island Agricultural Research Institute, Port Blair 744 101, Andaman and Nicobar Islands, India","institution_ids":["https://openalex.org/I4210151296"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062191582","display_name":"Sunil Kumar Thalor","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I45509622","display_name":"Indian Agricultural Research Institute","ror":"https://ror.org/01bzgdw81","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I45509622"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"S. K. Thalor","raw_affiliation_strings":["Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi, India","institution_ids":["https://openalex.org/I45509622"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084846359","display_name":"Kalyan Kumar Mondal","orcid":"https://orcid.org/0000-0002-0325-8969","observed_orcids":["https://orcid.org/0000-0002-0325-8969"]},"institutions":[{"id":"https://openalex.org/I45509622","display_name":"Indian Agricultural Research Institute","ror":"https://ror.org/01bzgdw81","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I45509622"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"K. K. Mondal","raw_affiliation_strings":["Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi, India","institution_ids":["https://openalex.org/I45509622"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006053505","display_name":"Shivakumar Chinchure","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I179420787","display_name":"Indian Council of Agricultural Research","ror":"https://ror.org/04fw54a43","country_code":"IN","type":"government","lineage":["https://openalex.org/I179420787"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"S. Chinchure","raw_affiliation_strings":["ICAR-National Research Centre on Pomegranate, Solapur, Maharashtra, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICAR-National Research Centre on Pomegranate, Solapur, Maharashtra, India","institution_ids":["https://openalex.org/I179420787"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082905344","display_name":"Ramakant Gharate","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I179420787","display_name":"Indian Council of Agricultural Research","ror":"https://ror.org/04fw54a43","country_code":"IN","type":"government","lineage":["https://openalex.org/I179420787"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"R. Gharate","raw_affiliation_strings":["ICAR-National Research Centre on Pomegranate, Solapur, Maharashtra, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICAR-National Research Centre on Pomegranate, Solapur, Maharashtra, India","institution_ids":["https://openalex.org/I179420787"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5000783902"],"corresponding_institution_ids":["https://openalex.org/I45509622"],"apc_list":{"value":3000,"currency":"USD","value_usd":3000},"apc_paid":null,"fwci":1.8182,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.83539599,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"69","issue":"2","first_page":"347","last_page":"359"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11750","display_name":"Phytoplasmas and Hemiptera pathogens","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/xanthomonas-axonopodis-pv-punicae","display_name":"Xanthomonas axonopodis pv. punicae","score":1.0},{"id":"https://openalex.org/keywords/clonal-populations","display_name":"clonal populations","score":0.800000011920929},{"id":"https://openalex.org/keywords/multilocus-sequence-analysis","display_name":"multilocus sequence analysis","score":0.7979999780654907},{"id":"https://openalex.org/keywords/sequence-types","display_name":"sequence types","score":0.7070000171661377},{"id":"https://openalex.org/keywords/phylogenetic-analysis","display_name":"phylogenetic analysis","score":0.6539999842643738},{"id":"https://openalex.org/keywords/16s-23s-rdna-intergenic-spacer","display_name":"16S-23S rDNA intergenic spacer","score":0.7689999938011169},{"id":"https://openalex.org/keywords/plant-pathogenic-bacteria","display_name":"plant pathogenic bacteria","score":0.6079999804496765},{"id":"https://openalex.org/keywords/pomegranate-cultivars","display_name":"pomegranate cultivars","score":0.7409999966621399},{"id":"https://openalex.org/keywords/latent-infection","display_name":"latent infection","score":0.5820000171661377},{"id":"https://openalex.org/keywords/india","display_name":"India","score":0.32600000500679016}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9682663083076477},{"id":"https://openalex.org/C2910266619","wikidata":"https://www.wikidata.org/wiki/Q15637477","display_name":"Xanthomonas citri","level":3,"score":0.6420380473136902},{"id":"https://openalex.org/C182076605","wikidata":"https://www.wikidata.org/wiki/Q4273292","display_name":"Blight","level":2,"score":0.5223370790481567},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.45438066124916077},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.4307313859462738},{"id":"https://openalex.org/C2780746887","wikidata":"https://www.wikidata.org/wiki/Q140652","display_name":"Xanthomonas","level":3,"score":0.4179225564002991},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.40150582790374756},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.39203155040740967},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.3426826000213623},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.17654705047607422},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12279736995697021}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1111/ppa.13128","doi":"https://doi.org/10.1111/ppa.13128","is_oa":false,"landing_page_url":"https://doi.org/10.1111/ppa.13128","pdf_url":null,"source":{"id":"https://openalex.org/S63107127","display_name":"Plant Pathology","issn_l":"0032-0862","issn":["0032-0862","1365-3059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","jufo-2","ki-jl-2","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Pathology","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.9208999872207642}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W579830666","https://openalex.org/W1198608348","https://openalex.org/W2008630448","https://openalex.org/W2015526157","https://openalex.org/W2015565927","https://openalex.org/W2016605860","https://openalex.org/W2025686663","https://openalex.org/W2027717797","https://openalex.org/W2037017363","https://openalex.org/W2061746671","https://openalex.org/W2082539083","https://openalex.org/W2083587510","https://openalex.org/W2091207179","https://openalex.org/W2117345120","https://openalex.org/W2131705791","https://openalex.org/W2134650310","https://openalex.org/W2142503351","https://openalex.org/W2148518982","https://openalex.org/W2149652290","https://openalex.org/W2154845780","https://openalex.org/W2158714788","https://openalex.org/W2166044566","https://openalex.org/W2166977933","https://openalex.org/W2180376983","https://openalex.org/W2185760350","https://openalex.org/W2506043177","https://openalex.org/W2593675122","https://openalex.org/W2601844795","https://openalex.org/W2783719442","https://openalex.org/W2799524357"],"related_works":["https://openalex.org/W1997809784","https://openalex.org/W2746163349","https://openalex.org/W2601844795","https://openalex.org/W4387330279","https://openalex.org/W3082638369","https://openalex.org/W3134485909","https://openalex.org/W2768847827","https://openalex.org/W1856923497","https://openalex.org/W7220404857","https://openalex.org/W2342604233"],"abstract_inverted_index":{"Yellow\u2010pigmented":[0],"bacteria":[1],"isolated":[2],"from":[3,87],"blight\u2010affected":[4],"pomegranate":[5,50,205,215,239],"leaves":[6],"and":[7,21,25,39,42,45,60,124,133,147,228,243],"fruit":[8],"across":[9],"seven":[10],"Indian":[11,158,254],"states":[12],"in":[13,101,130,157,185,241,252],"epidemics":[14],"during":[15],"the":[16,88,177,219,222,231,235],"years":[17],"2008\u20132016":[18],"were":[19,81,136],"characterized":[20],"identified":[22],"using":[23,90],"phenotypic":[24,32],"genotypic":[26],"tools.":[27],"All":[28],"bacterial":[29,223,249],"isolates":[30,77,103],"shared":[31],"traits":[33],"such":[34],"as":[35,69],"colony":[36],"morphology,":[37],"NaCl":[38],"pH":[40],"sensitivity":[41],"fuscan":[43],"production,":[44],"caused":[46],"typical":[47],"lesions":[48],"on":[49,150,201],"plants":[51],"upon":[52],"artificial":[53],"inoculation.":[54],"Analysis":[55],"of":[56,163,196,213,221,230,247],"16S":[57],"ribosomal":[58],"DNA":[59],"16S\u201323S":[61],"rDNA":[62],"intergenic":[63],"spacer":[64],"sequences":[65],"confirmed":[66],"their":[67,151],"identity":[68],"Xanthomonas":[70,169],"axonopodis":[71,198],"pv.":[72,199],"punicae":[73,200],".":[74,181],"The":[75,182,207],"new":[76],"collected":[78],"after":[79],"2000":[80],"compared":[82],"with":[83,167,176],"an":[84],"old":[85],"isolate":[86],"1950s":[89],"polyphasic":[91],"taxonomic":[92],"approaches":[93],"including":[94],"multilocus":[95],"sequence":[96,142],"analysis":[97,162],"(MLSA).":[98],"Nucleotide":[99],"polymorphism":[100],"24":[102],"for":[104],"nine":[105],"genomic":[106],"loci":[107,131],"(":[108],"dnaK":[109],",":[110,112,118,120,122],"fyuA":[111,132],"gyrB":[113,115],"(Young),":[114],"(Almeida),":[116],"rpoD":[117],"fusA":[119],"gapA":[121],"gltA":[123],"lepA":[125],")":[126],"showed":[127],"minor":[128],"variations":[129],"gyrB.":[134],"Isolates":[135],"grouped":[137],"into":[138],"four":[139],"nearly":[140],"identical":[141],"types,":[143],"ST1,":[144],"ST2,":[145],"ST3":[146,154],"ST4,":[148],"based":[149],"allelic":[152],"profiles,":[153],"being":[155],"widespread":[156],"states.":[159,255],"Molecular":[160],"phylogenetic":[161],"concatenated":[164],"5690":[165],"bp":[166],"other":[168],"pathovars":[170],"revealed":[171],"its":[172],"close":[173],"genetic":[174],"similarity":[175],"X.":[178,197],"citri":[179],"group":[180],"blight":[183],"outbreak":[184],"diverse":[186],"geographical":[187],"locations":[188],"is":[189],"attributed":[190],"to":[191,218],"a":[192,202],"re\u2010emerged":[193],"clonal":[194,245],"population":[195],"genetically":[203],"homogenous":[204],"cultivar.":[206],"latently":[208],"infected":[209],"vegetative":[210],"planting":[211],"material":[212],"elite":[214,238],"cultivars":[216,240],"contributed":[217],"dissemination":[220],"inoculum.":[224],"This":[225],"study":[226],"highlights":[227],"forewarns":[229],"role":[232],"played":[233],"by":[234],"clonally":[236],"propagated":[237],"disseminating":[242],"sustaining":[244],"populations":[246],"this":[248],"plant":[250],"pathogen":[251],"many":[253]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2019-12-13T00:00:00"}