{"id":"https://openalex.org/W2990215402","doi":"https://doi.org/10.1038/s41587-019-0334-5","title":"Detecting contamination in viromes using ViromeQC","display_name":"Detecting contamination in viromes using ViromeQC","publication_year":2019,"publication_date":"2019-11-20","ids":{"openalex":"https://openalex.org/W2990215402","doi":"https://doi.org/10.1038/s41587-019-0334-5","mag":"2990215402","pmid":"https://pubmed.ncbi.nlm.nih.gov/31748692"},"language":"en","primary_location":{"id":"doi:10.1038/s41587-019-0334-5","doi":"https://doi.org/10.1038/s41587-019-0334-5","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s41587-019-0334-5","pdf_url":null,"source":{"id":"https://openalex.org/S106963461","display_name":"Nature Biotechnology","issn_l":"0733-222X","issn":["0733-222X","1087-0156","1546-1696","2331-3684"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Biotechnology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://iris.unitn.it/bitstream/11572/246053/5/56253_4_merged_1572453005.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015174011","display_name":"Moreno Zolfo","orcid":"https://orcid.org/0000-0001-6661-4046","observed_orcids":["https://orcid.org/0000-0001-6661-4046"]},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Moreno Zolfo","raw_affiliation_strings":["Department CIBIO, University of Trento, Trento, Italy"],"raw_orcid":"https://orcid.org/0000-0001-6661-4046","affiliations":[{"raw_affiliation_string":"Department CIBIO, University of Trento, Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028950712","display_name":"Federica Pinto","orcid":"https://orcid.org/0000-0002-4539-4811","observed_orcids":["https://orcid.org/0000-0002-4539-4811"]},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Federica Pinto","raw_affiliation_strings":["Department CIBIO, University of Trento, Trento, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department CIBIO, University of Trento, Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023870348","display_name":"Francesco Asnicar","orcid":"https://orcid.org/0000-0003-3732-1468","observed_orcids":["https://orcid.org/0000-0003-3732-1468"]},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesco Asnicar","raw_affiliation_strings":["Department CIBIO, University of Trento, Trento, Italy"],"raw_orcid":"https://orcid.org/0000-0003-3732-1468","affiliations":[{"raw_affiliation_string":"Department CIBIO, University of Trento, Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011502535","display_name":"Paolo Manghi","orcid":"https://orcid.org/0000-0003-0846-6529","observed_orcids":["https://orcid.org/0000-0003-0846-6529"]},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo Manghi","raw_affiliation_strings":["Department CIBIO, University of Trento, Trento, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department CIBIO, University of Trento, Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039663129","display_name":"Adrian Tett","orcid":"https://orcid.org/0000-0003-3141-3943","observed_orcids":["https://orcid.org/0000-0003-3141-3943"]},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Adrian Tett","raw_affiliation_strings":["Department CIBIO, University of Trento, Trento, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department CIBIO, University of Trento, Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016535188","display_name":"Frederic D. Bushman","orcid":"https://orcid.org/0000-0003-4740-4056","observed_orcids":["https://orcid.org/0000-0003-4740-4056"]},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Frederic D. Bushman","raw_affiliation_strings":["Department of Microbiology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA"],"raw_orcid":"https://orcid.org/0000-0003-4740-4056","affiliations":[{"raw_affiliation_string":"Department of Microbiology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068576885","display_name":"Nicola Segata","orcid":"https://orcid.org/0000-0002-1583-5794","observed_orcids":["https://orcid.org/0000-0002-1583-5794"]},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Nicola Segata","raw_affiliation_strings":["Department CIBIO, University of Trento, Trento, Italy. nicola.segata@unitn.it","Department CIBIO, University of Trento, Trento, Italy"],"raw_orcid":"https://orcid.org/0000-0002-1583-5794","affiliations":[{"raw_affiliation_string":"Department CIBIO, University of Trento, Trento, Italy. nicola.segata@unitn.it","institution_ids":["https://openalex.org/I193223587"]},{"raw_affiliation_string":"Department CIBIO, University of Trento, Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5068576885"],"corresponding_institution_ids":["https://openalex.org/I193223587"],"apc_list":{"value":12690,"currency":"USD","value_usd":12690},"apc_paid":null,"fwci":5.846,"has_fulltext":true,"cited_by_count":109,"citation_normalized_percentile":{"value":0.97474476,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"37","issue":"12","first_page":"1408","last_page":"1412"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.8544999957084656,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.8544999957084656,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.133200004696846,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.000699999975040555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"metagenomics","score":0.6119999885559082},{"id":"https://openalex.org/keywords/virome","display_name":"virome","score":0.7009999752044678},{"id":"https://openalex.org/keywords/contaminant-detection","display_name":"contamination detection","score":0.765999972820282}],"concepts":[{"id":"https://openalex.org/C112570922","wikidata":"https://www.wikidata.org/wiki/Q60528603","display_name":"Contamination","level":2,"score":0.6686915755271912},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.49635225534439087},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36052489280700684},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0962451696395874}],"mesh":[{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012367","descriptor_name":"RNA, Viral","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012367","descriptor_name":"RNA, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D014776","descriptor_name":"Virus Cultivation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1038/s41587-019-0334-5","doi":"https://doi.org/10.1038/s41587-019-0334-5","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s41587-019-0334-5","pdf_url":null,"source":{"id":"https://openalex.org/S106963461","display_name":"Nature Biotechnology","issn_l":"0733-222X","issn":["0733-222X","1087-0156","1546-1696","2331-3684"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Biotechnology","raw_type":"journal-article"},{"id":"pmid:31748692","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31748692","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature biotechnology","raw_type":"Letter"},{"id":"pmh:oai:iris.unitn.it:11572/246053","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/11572/246053","pdf_url":"https://iris.unitn.it/bitstream/11572/246053/5/56253_4_merged_1572453005.pdf","source":{"id":"https://openalex.org/S4377196320","display_name":"Iris (University of Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:iris.unitn.it:11572/246053","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/11572/246053","pdf_url":"https://iris.unitn.it/bitstream/11572/246053/5/56253_4_merged_1572453005.pdf","source":{"id":"https://openalex.org/S4377196320","display_name":"Iris (University of Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"score":0.6240000128746033,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1178615512","display_name":null,"funder_award_id":"H2020 SC1","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G1435697331","display_name":null,"funder_award_id":"MASTER-818368","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G1635580217","display_name":null,"funder_award_id":"OncoBiome 825410","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G1994097943","display_name":null,"funder_award_id":"716575","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2218295757","display_name":null,"funder_award_id":"818368","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G2633149742","display_name":"Gut OncoMicrobiome Signatures (GOMS) associated with cancer incidence, prognosis and prediction of treatment response.","funder_award_id":"825410","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3012247180","display_name":null,"funder_award_id":"SC1-BHC","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G4220255753","display_name":null,"funder_award_id":"H2020-SFS-2018-1","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4672315780","display_name":"Microbiome Applications for Sustainable food systems through Technologies and EnteRprise","funder_award_id":"818368","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6049260834","display_name":null,"funder_award_id":"H2020-SC1","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G6283029999","display_name":null,"funder_award_id":"H2020-SC1-BHC","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6315092050","display_name":null,"funder_award_id":"H2020","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G8931791793","display_name":null,"funder_award_id":"RBFR13EWWI_001","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G92820738","display_name":null,"funder_award_id":"825410","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2990215402.pdf","grobid_xml":"https://content.openalex.org/works/W2990215402.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1552724685","https://openalex.org/W1974846245","https://openalex.org/W1989021204","https://openalex.org/W1997115296","https://openalex.org/W2070068738","https://openalex.org/W2097146199","https://openalex.org/W2106119366","https://openalex.org/W2112419798","https://openalex.org/W2114104680","https://openalex.org/W2116041602","https://openalex.org/W2118341464","https://openalex.org/W2119859604","https://openalex.org/W2120141270","https://openalex.org/W2145370398","https://openalex.org/W2157678804","https://openalex.org/W2161251845","https://openalex.org/W2216536291","https://openalex.org/W2328985724","https://openalex.org/W2411903398","https://openalex.org/W2521169042","https://openalex.org/W2523445937","https://openalex.org/W2558386355","https://openalex.org/W2732139758","https://openalex.org/W2754579667","https://openalex.org/W2760526698","https://openalex.org/W2781485689","https://openalex.org/W2796529794","https://openalex.org/W2802528759","https://openalex.org/W2913714888","https://openalex.org/W2950164626","https://openalex.org/W2952200190","https://openalex.org/W6638433118"],"related_works":["https://openalex.org/W1656951426","https://openalex.org/W7039674016","https://openalex.org/W1988460088","https://openalex.org/W4416529492","https://openalex.org/W7036846254","https://openalex.org/W4320933626","https://openalex.org/W6960294742","https://openalex.org/W3134725158","https://openalex.org/W1999978427","https://openalex.org/W2189472024"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":13},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":20},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":12}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2019-12-05T00:00:00"}