{"id":"https://openalex.org/W2979495288","doi":"https://doi.org/10.1101/793471","title":"The diversity and distribution of endophytes across biomes, plant phylogeny, and host tissues\u2014how far have we come and where do we go from here?","display_name":"The diversity and distribution of endophytes across biomes, plant phylogeny, and host tissues\u2014how far have we come and where do we go from here?","publication_year":2019,"publication_date":"2019-10-09","ids":{"openalex":"https://openalex.org/W2979495288","doi":"https://doi.org/10.1101/793471","mag":"2979495288"},"language":"en","primary_location":{"id":"doi:10.1101/793471","doi":"https://doi.org/10.1101/793471","is_oa":true,"landing_page_url":"https://doi.org/10.1101/793471","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2020/02/27/793471.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2020/02/27/793471.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047619284","display_name":"Joshua G. Harrison","orcid":"https://orcid.org/0000-0003-2524-0273","observed_orcids":["https://orcid.org/0000-0003-2524-0273"]},"institutions":[{"id":"https://openalex.org/I12834331","display_name":"University of Wyoming","ror":"https://ror.org/01485tq96","country_code":"US","type":"education","lineage":["https://openalex.org/I12834331"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Joshua G. Harrison","raw_affiliation_strings":["Department of Botany, University of Wyoming, Laramie, WY 82071, USA","Department of Botany, University of Wyoming, Laramie, WY 8207, USA"],"raw_orcid":"https://orcid.org/0000-0003-2524-0273","affiliations":[{"raw_affiliation_string":"Department of Botany, University of Wyoming, Laramie, WY 82071, USA","institution_ids":["https://openalex.org/I12834331"]},{"raw_affiliation_string":"Department of Botany, University of Wyoming, Laramie, WY 8207, USA","institution_ids":["https://openalex.org/I12834331"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039080137","display_name":"Eric A. Griffin","orcid":"https://orcid.org/0000-0002-8886-2144","observed_orcids":["https://orcid.org/0000-0002-8886-2144"]},"institutions":[{"id":"https://openalex.org/I59749544","display_name":"New Mexico Highlands University","ror":"https://ror.org/016tyxe19","country_code":"US","type":"education","lineage":["https://openalex.org/I59749544"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric A. Griffin","raw_affiliation_strings":["New Mexico Highlands University, Las Vegas, NM 87701, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New Mexico Highlands University, Las Vegas, NM 87701, USA","institution_ids":["https://openalex.org/I59749544"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5047619284"],"corresponding_institution_ids":["https://openalex.org/I12834331"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12934","display_name":"Plant and fungal interactions","score":0.9794999957084656,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12934","display_name":"Plant and fungal interactions","score":0.9794999957084656,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.0066999997943639755,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10451","display_name":"Mycorrhizal Fungi and Plant Interactions","score":0.006200000178068876,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/endophytes","display_name":"endophytes","score":0.9580000042915344},{"id":"https://openalex.org/keywords/endophytic-fungi","display_name":"endophytic fungi","score":0.9290000200271606},{"id":"https://openalex.org/keywords/endophytic-bacteria","display_name":"endophytic bacteria","score":1.0},{"id":"https://openalex.org/keywords/endophyte-diversity","display_name":"endophyte diversity","score":0.906000018119812},{"id":"https://openalex.org/keywords/biomes","display_name":"biomes","score":0.8619999885559082},{"id":"https://openalex.org/keywords/plant-phylogeny","display_name":"plant phylogeny","score":0.9869999885559082},{"id":"https://openalex.org/keywords/research-gap","display_name":"research gaps","score":0.4830000102519989},{"id":"https://openalex.org/keywords/woody-plants","display_name":"woody plants","score":0.7480000257492065},{"id":"https://openalex.org/keywords/graminoids","display_name":"graminoids","score":0.9860000014305115},{"id":"https://openalex.org/keywords/forbs","display_name":"forbs","score":0.7080000042915344},{"id":"https://openalex.org/keywords/root-endophytes","display_name":"root endophytes","score":0.9959999918937683}],"concepts":[{"id":"https://openalex.org/C89920630","wikidata":"https://www.wikidata.org/wiki/Q101998","display_name":"Biome","level":3,"score":0.8385041952133179},{"id":"https://openalex.org/C53565203","wikidata":"https://www.wikidata.org/wiki/Q17146659","display_name":"Species richness","level":2,"score":0.7467294335365295},{"id":"https://openalex.org/C2777525088","wikidata":"https://www.wikidata.org/wiki/Q260335","display_name":"Endophyte","level":2,"score":0.7270403504371643},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7033309936523438},{"id":"https://openalex.org/C130217890","wikidata":"https://www.wikidata.org/wiki/Q47041","display_name":"Biodiversity","level":2,"score":0.6475204825401306},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.5674165487289429},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.5669621229171753},{"id":"https://openalex.org/C2781316041","wikidata":"https://www.wikidata.org/wiki/Q1230584","display_name":"Diversity (politics)","level":2,"score":0.504880964756012},{"id":"https://openalex.org/C43144210","wikidata":"https://www.wikidata.org/wiki/Q121610","display_name":"Symbiosis","level":3,"score":0.4321158230304718},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.3675999045372009},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.22150522470474243},{"id":"https://openalex.org/C110872660","wikidata":"https://www.wikidata.org/wiki/Q37813","display_name":"Ecosystem","level":2,"score":0.1487424373626709},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.08219102025032043},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1101/793471","doi":"https://doi.org/10.1101/793471","is_oa":true,"landing_page_url":"https://doi.org/10.1101/793471","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2020/02/27/793471.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.1101/793471","doi":"https://doi.org/10.1101/793471","is_oa":true,"landing_page_url":"https://doi.org/10.1101/793471","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2020/02/27/793471.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1042274128","display_name":null,"funder_award_id":"1655726","funder_id":"https://openalex.org/F4320338283","funder_display_name":"Office of Experimental Program to Stimulate Competitive Research"},{"id":"https://openalex.org/G8165412079","display_name":"RII Track-1: Linking Microbial Life to Ecosystem Services Across Wyoming's Dynamic Landscape","funder_award_id":"1655726","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306083","display_name":"Smithsonian Institution","ror":"https://ror.org/01pp8nd67"},{"id":"https://openalex.org/F4320332806","display_name":"Smithsonian Environmental Research Center","ror":"https://ror.org/032a13752"},{"id":"https://openalex.org/F4320338283","display_name":"Office of Experimental Program to Stimulate Competitive Research","ror":"https://ror.org/04k9mqs78"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2979495288.pdf","grobid_xml":"https://content.openalex.org/works/W2979495288.grobid-xml"},"referenced_works_count":181,"referenced_works":["https://openalex.org/W175693795","https://openalex.org/W207623927","https://openalex.org/W560931311","https://openalex.org/W1460923007","https://openalex.org/W1490907429","https://openalex.org/W1538298176","https://openalex.org/W1686139248","https://openalex.org/W1759341350","https://openalex.org/W1845098539","https://openalex.org/W1857955679","https://openalex.org/W1905406432","https://openalex.org/W1936774573","https://openalex.org/W1950989222","https://openalex.org/W1965087628","https://openalex.org/W1965597238","https://openalex.org/W1967490826","https://openalex.org/W1969658820","https://openalex.org/W1971633763","https://openalex.org/W1982972041","https://openalex.org/W1984840134","https://openalex.org/W1985544238","https://openalex.org/W1985862669","https://openalex.org/W1992446742","https://openalex.org/W1993342154","https://openalex.org/W1995686767","https://openalex.org/W1996622936","https://openalex.org/W2001291246","https://openalex.org/W2002989268","https://openalex.org/W2004573845","https://openalex.org/W2005577814","https://openalex.org/W2006250416","https://openalex.org/W2006802554","https://openalex.org/W2008312527","https://openalex.org/W2021887762","https://openalex.org/W2023652041","https://openalex.org/W2024878895","https://openalex.org/W2025268926","https://openalex.org/W2025767761","https://openalex.org/W2028010170","https://openalex.org/W2030273290","https://openalex.org/W2030646129","https://openalex.org/W2033900366","https://openalex.org/W2034279764","https://openalex.org/W2039662911","https://openalex.org/W2040210770","https://openalex.org/W2043054234","https://openalex.org/W2045265255","https://openalex.org/W2045348517","https://openalex.org/W2046778918","https://openalex.org/W2047717547","https://openalex.org/W2048124107","https://openalex.org/W2049424645","https://openalex.org/W2057881782","https://openalex.org/W2057931057","https://openalex.org/W2059022193","https://openalex.org/W2064805654","https://openalex.org/W2070826422","https://openalex.org/W2076436636","https://openalex.org/W2076791078","https://openalex.org/W2079414821","https://openalex.org/W2082399061","https://openalex.org/W2083044450","https://openalex.org/W2083440500","https://openalex.org/W2088062314","https://openalex.org/W2088468515","https://openalex.org/W2090572689","https://openalex.org/W2091804424","https://openalex.org/W2093346207","https://openalex.org/W2094882506","https://openalex.org/W2099556958","https://openalex.org/W2101023341","https://openalex.org/W2102483750","https://openalex.org/W2103122457","https://openalex.org/W2104771258","https://openalex.org/W2104814423","https://openalex.org/W2110001740","https://openalex.org/W2110024834","https://openalex.org/W2113114502","https://openalex.org/W2117456634","https://openalex.org/W2119276271","https://openalex.org/W2120868597","https://openalex.org/W2120931262","https://openalex.org/W2123697951","https://openalex.org/W2126034631","https://openalex.org/W2126611358","https://openalex.org/W2126944591","https://openalex.org/W2134094418","https://openalex.org/W2135333204","https://openalex.org/W2135560283","https://openalex.org/W2135673702","https://openalex.org/W2137347531","https://openalex.org/W2137711635","https://openalex.org/W2139168999","https://openalex.org/W2140209070","https://openalex.org/W2140967916","https://openalex.org/W2142299584","https://openalex.org/W2142678031","https://openalex.org/W2142834673","https://openalex.org/W2145840889","https://openalex.org/W2147110714","https://openalex.org/W2149981091","https://openalex.org/W2150136770","https://openalex.org/W2151117351","https://openalex.org/W2152024768","https://openalex.org/W2152274690","https://openalex.org/W2157649328","https://openalex.org/W2162331245","https://openalex.org/W2162515800","https://openalex.org/W2163552585","https://openalex.org/W2164829856","https://openalex.org/W2165872248","https://openalex.org/W2167460211","https://openalex.org/W2167554803","https://openalex.org/W2172598864","https://openalex.org/W2179946186","https://openalex.org/W2181371138","https://openalex.org/W2188792880","https://openalex.org/W2192105104","https://openalex.org/W2216303237","https://openalex.org/W2225049657","https://openalex.org/W2272473773","https://openalex.org/W2291797884","https://openalex.org/W2303429058","https://openalex.org/W2312829458","https://openalex.org/W2330248830","https://openalex.org/W2336330109","https://openalex.org/W2337038812","https://openalex.org/W2340102376","https://openalex.org/W2469254538","https://openalex.org/W2473240702","https://openalex.org/W2481632858","https://openalex.org/W2507272031","https://openalex.org/W2525440846","https://openalex.org/W2582743722","https://openalex.org/W2592367925","https://openalex.org/W2603930527","https://openalex.org/W2615552449","https://openalex.org/W2616275858","https://openalex.org/W2619295479","https://openalex.org/W2619798870","https://openalex.org/W2621365158","https://openalex.org/W2625740291","https://openalex.org/W2686588446","https://openalex.org/W2707532989","https://openalex.org/W2733519465","https://openalex.org/W2735262412","https://openalex.org/W2744070981","https://openalex.org/W2747680554","https://openalex.org/W2772512776","https://openalex.org/W2781382993","https://openalex.org/W2789795110","https://openalex.org/W2793747069","https://openalex.org/W2794193746","https://openalex.org/W2794904294","https://openalex.org/W2797811632","https://openalex.org/W2804348501","https://openalex.org/W2809265147","https://openalex.org/W2810327123","https://openalex.org/W2888015484","https://openalex.org/W2888119911","https://openalex.org/W2900678021","https://openalex.org/W2901259662","https://openalex.org/W2901734989","https://openalex.org/W2906359281","https://openalex.org/W2911249015","https://openalex.org/W2912326412","https://openalex.org/W2913152566","https://openalex.org/W2920487022","https://openalex.org/W2920926117","https://openalex.org/W2944634920","https://openalex.org/W2945514851","https://openalex.org/W2965154389","https://openalex.org/W2965912277","https://openalex.org/W2980913608","https://openalex.org/W2987266449","https://openalex.org/W2998067431","https://openalex.org/W3039974409","https://openalex.org/W3043238460","https://openalex.org/W3174993126","https://openalex.org/W3181056682","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2091937575","https://openalex.org/W1224781434","https://openalex.org/W2808770581","https://openalex.org/W2511915499","https://openalex.org/W2930143154","https://openalex.org/W7135971655","https://openalex.org/W1802677345","https://openalex.org/W3119856315","https://openalex.org/W4416913032","https://openalex.org/W2361205925"],"abstract_inverted_index":{"Abstract":[0],"The":[1],"interiors":[2,219],"of":[3,69,85,107,121,213,220,250,277],"plants":[4],"are":[5,11],"colonized":[6],"by":[7,74],"diverse":[8],"microorganisms":[9],"that":[10,88,93,143,216,254,265,308],"referred":[12],"to":[13,38,45,132,189,205,228,299,302],"as":[14],"endophytes.":[15],"Endophytes":[16],"have":[17,113,256],"received":[18],"much":[19],"attention":[20],"over":[21],"the":[22,70,86,158,167,191,209,214,218,251,283,292,304],"past":[23],"few":[24],"decades,":[25],"yet":[26],"many":[27],"questions":[28],"remain":[29],"unanswered":[30],"regarding":[31,208],"patterns":[32,136],"in":[33,65,100,116,145,148,161,170,179,193,231,248,267,286,295,306],"their":[34],"biodiversity":[35,210],"at":[36,101],"local":[37],"global":[39,58],"scales.":[40],"To":[41],"characterize":[42,229],"research":[43,59,252,301],"effort":[44],"date,":[46],"we":[47,89,174,195,223,259,309],"synthesized":[48,260],"results":[49,262],"from":[50,105,118],"\u223c600":[51],"published":[52,261],"studies.":[53,184],"Our":[54],"survey":[55,126],"revealed":[56],"a":[57,128,235,275],"interest":[60,253],"and":[61,80,197,211,233,245,263],"highlighted":[62],"several":[63],"gaps":[64,192,230,305],"knowledge.":[66],"For":[67,172],"instance,":[68],"seventeen":[71],"biomes":[72],"encompassed":[73],"our":[75,125],"survey,":[76],"seven":[77],"were":[78,157,166,282,291],"understudied":[79],"together":[81],"composed":[82],"only":[83,119],"7%":[84],"studies":[87],"considered.":[90],"We":[91,123,141,185,240,297],"found":[92,142,175],"fungal":[94],"endophyte":[95,134,146,268],"diversity":[96],"has":[97],"been":[98,114],"characterized":[99],"least":[102],"one":[103],"host":[104,153,278],"30%":[106],"embryophyte":[108],"families,":[109,244],"while":[110],"bacterial":[111],"endophytes":[112],"surveyed":[115,224],"hosts":[117],"10.5%":[120],"families.":[122],"complimented":[124],"with":[127,152],"vote":[129],"counting":[130],"procedure":[131],"determine":[133],"richness":[135,182,269],"among":[137,183,270],"plant":[138,243,271],"tissue":[139,160,169,181,272,285,294],"types.":[140],"variation":[144,266],"assemblages":[147],"above-ground":[149],"tissues":[150],"varied":[151],"growth":[154,279],"habit.":[155,280],"Stems":[156,281],"richest":[159,168,284,293],"woody":[162,287],"plants,":[163,288],"whereas":[164,289],"roots":[165,290],"graminoids.":[171,296],"forbs,":[173],"no":[176],"consistent":[177],"differences":[178],"relative":[180],"propose":[186],"future":[187,238],"directions":[188],"fill":[190,303],"knowledge":[194,232,307],"uncovered":[196],"inspire":[198,300],"further":[199],"research.":[200,239],"Originality-Significance":[201],"Statement":[202],"Much":[203],"remains":[204],"be":[206],"learned":[207],"distribution":[212],"microbes":[215],"colonize":[217],"plants.":[221],"Here,":[222],"approximately":[225],"600":[226],"publications":[227],"provide":[234],"roadmap":[236],"for":[237],"compared":[241],"biomes,":[242],"geographical":[246],"regions":[247],"terms":[249],"they":[255],"garnered.":[257],"Additionally,":[258],"report":[264],"types":[273],"is":[274],"function":[276],"hope":[298],"uncovered.":[310]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2019-10-18T00:00:00"}