{"id":"https://openalex.org/W2979358136","doi":"https://doi.org/10.1016/j.chom.2019.09.009","title":"The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific","display_name":"The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific","publication_year":2019,"publication_date":"2019-10-01","ids":{"openalex":"https://openalex.org/W2979358136","doi":"https://doi.org/10.1016/j.chom.2019.09.009","mag":"2979358136","pmid":"https://pubmed.ncbi.nlm.nih.gov/31600503"},"language":"en","primary_location":{"id":"doi:10.1016/j.chom.2019.09.009","doi":"https://doi.org/10.1016/j.chom.2019.09.009","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.chom.2019.09.009","pdf_url":null,"source":{"id":"https://openalex.org/S207313999","display_name":"Cell Host & Microbe","issn_l":"1931-3128","issn":["1931-3128","1934-6069"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315673","host_organization_name":"Cell Press","host_organization_lineage":["https://openalex.org/P4310315673","https://openalex.org/P4310320990"],"host_organization_lineage_names":["Cell Press","Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cell Host & Microbe","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://doi.org/10.1016/j.chom.2019.09.009","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005302718","display_name":"Andrey Nikolaevich Shkoporov","orcid":"https://orcid.org/0000-0002-5547-8672","observed_orcids":["https://orcid.org/0000-0002-5547-8672"]},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]},{"id":"https://openalex.org/I4210141138","display_name":"APC Microbiome Institute","ror":"https://ror.org/03f2ct267","country_code":"IE","type":"facility","lineage":["https://openalex.org/I4210141138"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"Andrey N. Shkoporov","raw_affiliation_strings":["APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland. Electronic address: andrey.shkoporov@ucc.ie","APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland. Electronic address: andrey.shkoporov@ucc.ie","institution_ids":["https://openalex.org/I27577105","https://openalex.org/I4210141138"]},{"raw_affiliation_string":"APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021685996","display_name":"Adam G. Clooney","orcid":"https://orcid.org/0000-0003-4881-9544","observed_orcids":["https://orcid.org/0000-0003-4881-9544"]},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Adam G. Clooney","raw_affiliation_strings":["APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016722067","display_name":"Thomas Sutton","orcid":"https://orcid.org/0000-0002-0218-4275","observed_orcids":["https://orcid.org/0000-0002-0218-4275"]},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Thomas D.S. Sutton","raw_affiliation_strings":["APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026602407","display_name":"Feargal J. Ryan","orcid":"https://orcid.org/0000-0002-1565-4598","observed_orcids":["https://orcid.org/0000-0002-1565-4598"]},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Feargal J. Ryan","raw_affiliation_strings":["APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Karen M. Daly","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Karen M. Daly","raw_affiliation_strings":["APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086933834","display_name":"James A. Nolan","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"James A. Nolan","raw_affiliation_strings":["APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Siobhan A. McDonnell","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Siobhan A. McDonnell","raw_affiliation_strings":["APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022709839","display_name":"Ekaterina V. Khokhlova","orcid":"https://orcid.org/0009-0008-5904-2009","observed_orcids":["https://orcid.org/0009-0008-5904-2009"]},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Ekaterina V. Khokhlova","raw_affiliation_strings":["APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005085411","display_name":"Lorraine A. Draper","orcid":"https://orcid.org/0000-0002-6910-9317","observed_orcids":["https://orcid.org/0000-0002-6910-9317"]},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Lorraine A. Draper","raw_affiliation_strings":["APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057228176","display_name":"Amanda Forde","orcid":"https://orcid.org/0000-0002-7940-3413","observed_orcids":["https://orcid.org/0000-0002-7940-3413","https://orcid.org/0000-0002-6005-1112"]},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Amanda Forde","raw_affiliation_strings":["APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Emma Guerin","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Emma Guerin","raw_affiliation_strings":["APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083176548","display_name":"Vimalkumar Velayudhan","orcid":"https://orcid.org/0000-0002-3307-2938","observed_orcids":["https://orcid.org/0000-0002-3307-2938"]},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Vimalkumar Velayudhan","raw_affiliation_strings":["APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048633162","display_name":"R. Paul Ross","orcid":"https://orcid.org/0000-0003-4876-8839","observed_orcids":["https://orcid.org/0000-0003-4876-8839"]},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"R. Paul Ross","raw_affiliation_strings":["APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047441756","display_name":"Colin Hill","orcid":"https://orcid.org/0000-0002-8527-1445","observed_orcids":["https://orcid.org/0000-0002-8527-1445"]},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"Colin Hill","raw_affiliation_strings":["APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland. Electronic address: c.hill@ucc.ie","APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland. Electronic address: c.hill@ucc.ie","institution_ids":["https://openalex.org/I27577105"]},{"raw_affiliation_string":"APC Microbiome Ireland & School of Microbiology, University College Cork, Cork T12 YT20, Ireland","institution_ids":["https://openalex.org/I27577105"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5005302718","https://openalex.org/A5047441756"],"corresponding_institution_ids":["https://openalex.org/I27577105","https://openalex.org/I4210141138"],"apc_list":{"value":5200,"currency":"USD","value_usd":5200},"apc_paid":null,"fwci":34.5346,"has_fulltext":false,"cited_by_count":736,"citation_normalized_percentile":{"value":0.99892531,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"4","first_page":"527","last_page":"541.e5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10976","display_name":"Viral gastroenteritis research and epidemiology","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gut-virome","display_name":"gut virome","score":0.8529999852180481},{"id":"https://openalex.org/keywords/bacteriophages","display_name":"bacteriophages","score":0.9660000205039978},{"id":"https://openalex.org/keywords/viral-metagenomics","display_name":"viral metagenomics","score":0.6010000109672546},{"id":"https://openalex.org/keywords/temporal-stability","display_name":"temporal stability","score":0.6539999842643738},{"id":"https://openalex.org/keywords/crass-like-phages","display_name":"crAss-like phages","score":0.7059999704360962},{"id":"https://openalex.org/keywords/microviridae","display_name":"Microviridae","score":0.9769999980926514},{"id":"https://openalex.org/keywords/gut-microbiota","display_name":"gut microbiota","score":0.7459999918937683},{"id":"https://openalex.org/keywords/bacteroides","display_name":"Bacteroides","score":0.9369999766349792},{"id":"https://openalex.org/keywords/prevotella","display_name":"Prevotella","score":1.0},{"id":"https://openalex.org/keywords/faecalibacterium","display_name":"Faecalibacterium","score":0.9959999918937683},{"id":"https://openalex.org/keywords/viral-community-structure","display_name":"viral community structure","score":0.43700000643730164}],"concepts":[{"id":"https://openalex.org/C190743605","wikidata":"https://www.wikidata.org/wiki/Q17027885","display_name":"Human virome","level":4,"score":0.9788494110107422},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.914255678653717},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8112785816192627},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.7098057270050049},{"id":"https://openalex.org/C539455810","wikidata":"https://www.wikidata.org/wiki/Q739734","display_name":"Gut flora","level":2,"score":0.642512857913971},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.5475248098373413},{"id":"https://openalex.org/C3019978661","wikidata":"https://www.wikidata.org/wiki/Q739734","display_name":"Gut microbiome","level":3,"score":0.528462827205658},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.495461106300354},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4755639433860779},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.47189363837242126},{"id":"https://openalex.org/C190944805","wikidata":"https://www.wikidata.org/wiki/Q3922751","display_name":"Human Microbiome Project","level":4,"score":0.43531256914138794},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3671601414680481},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12352266907691956},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.12042385339736938}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000070036","descriptor_name":"Faecalibacterium","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D000070036","descriptor_name":"Faecalibacterium","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D001439","descriptor_name":"Bacteroides","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D001439","descriptor_name":"Bacteroides","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008137","descriptor_name":"Longitudinal Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017914","descriptor_name":"Microviridae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D017914","descriptor_name":"Microviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017914","descriptor_name":"Microviridae","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D018720","descriptor_name":"Prevotella","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D018720","descriptor_name":"Prevotella","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D019562","descriptor_name":"Viral Load","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1016/j.chom.2019.09.009","doi":"https://doi.org/10.1016/j.chom.2019.09.009","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.chom.2019.09.009","pdf_url":null,"source":{"id":"https://openalex.org/S207313999","display_name":"Cell Host & Microbe","issn_l":"1931-3128","issn":["1931-3128","1934-6069"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315673","host_organization_name":"Cell Press","host_organization_lineage":["https://openalex.org/P4310315673","https://openalex.org/P4310320990"],"host_organization_lineage_names":["Cell Press","Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cell Host & Microbe","raw_type":"journal-article"},{"id":"doi:10.1101/657528","doi":"https://doi.org/10.1101/657528","is_oa":true,"landing_page_url":"https://doi.org/10.1101/657528","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2019/06/03/657528.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmid:31600503","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31600503","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cell host & microbe","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1016/j.chom.2019.09.009","doi":"https://doi.org/10.1016/j.chom.2019.09.009","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.chom.2019.09.009","pdf_url":null,"source":{"id":"https://openalex.org/S207313999","display_name":"Cell Host & Microbe","issn_l":"1931-3128","issn":["1931-3128","1934-6069"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315673","host_organization_name":"Cell Press","host_organization_lineage":["https://openalex.org/P4310315673","https://openalex.org/P4310320990"],"host_organization_lineage_names":["Cell Press","Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cell Host & Microbe","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7246000170707703}],"study_designs":[{"display_name":"Observational Study","id":"https://openalex.org/study-designs/observational-study"}],"awards":[{"id":"https://openalex.org/G1383882326","display_name":null,"funder_award_id":"SFI/12/RC/","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G2999204551","display_name":null,"funder_award_id":"SFI/14/SP APC/B3032","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G3104299471","display_name":"Alimentary Pharmabiotic Centre (APC) - Interfacing Food & Medicine","funder_award_id":"12/RC/2273","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G4937382616","display_name":null,"funder_award_id":"SFI/14/SP APC/B3032","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G5016577965","display_name":"Gut Phageomics - Phage as diagnostics and/or therapeutics in IBD","funder_award_id":"14/SP APC/B3032","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G5098725405","display_name":null,"funder_award_id":"12/RC/","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G528836942","display_name":null,"funder_award_id":"SFI/12/RC/2273.","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"}],"funders":[{"id":"https://openalex.org/F4320320847","display_name":"Science Foundation Ireland","ror":"https://ror.org/0271asj38"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320337449","display_name":"Janssen Biotech","ror":"https://ror.org/03qd7mz70"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2979358136.pdf","grobid_xml":"https://content.openalex.org/works/W2979358136.grobid-xml"},"referenced_works_count":81,"referenced_works":["https://openalex.org/W575134778","https://openalex.org/W1703384511","https://openalex.org/W1966912927","https://openalex.org/W1976313814","https://openalex.org/W1982887640","https://openalex.org/W1987487254","https://openalex.org/W1989021204","https://openalex.org/W1990330334","https://openalex.org/W2002526888","https://openalex.org/W2006259275","https://openalex.org/W2023046869","https://openalex.org/W2024597931","https://openalex.org/W2036000059","https://openalex.org/W2048237985","https://openalex.org/W2057460314","https://openalex.org/W2081319466","https://openalex.org/W2094819389","https://openalex.org/W2097146199","https://openalex.org/W2099180981","https://openalex.org/W2103088074","https://openalex.org/W2108234281","https://openalex.org/W2114104680","https://openalex.org/W2118629634","https://openalex.org/W2119859604","https://openalex.org/W2124937554","https://openalex.org/W2125826054","https://openalex.org/W2128769815","https://openalex.org/W2131271579","https://openalex.org/W2134023754","https://openalex.org/W2137195441","https://openalex.org/W2157800726","https://openalex.org/W2159954944","https://openalex.org/W2161251845","https://openalex.org/W2169899471","https://openalex.org/W2170551349","https://openalex.org/W2173732482","https://openalex.org/W2178459747","https://openalex.org/W2254157384","https://openalex.org/W2296527675","https://openalex.org/W2468409351","https://openalex.org/W2511649068","https://openalex.org/W2514235427","https://openalex.org/W2545536333","https://openalex.org/W2560014131","https://openalex.org/W2562468253","https://openalex.org/W2565692782","https://openalex.org/W2599417231","https://openalex.org/W2732496903","https://openalex.org/W2736183866","https://openalex.org/W2756958651","https://openalex.org/W2761734077","https://openalex.org/W2770269406","https://openalex.org/W2794874510","https://openalex.org/W2796529794","https://openalex.org/W2797126254","https://openalex.org/W2806336739","https://openalex.org/W2809546070","https://openalex.org/W2854109189","https://openalex.org/W2883041645","https://openalex.org/W2898996828","https://openalex.org/W2900199636","https://openalex.org/W2902131597","https://openalex.org/W2903941997","https://openalex.org/W2911614963","https://openalex.org/W2912469688","https://openalex.org/W2913714888","https://openalex.org/W2922170278","https://openalex.org/W2943223175","https://openalex.org/W2948347995","https://openalex.org/W2950060642","https://openalex.org/W2950069964","https://openalex.org/W2951371411","https://openalex.org/W2951774170","https://openalex.org/W2951852653","https://openalex.org/W2955323986","https://openalex.org/W2956144862","https://openalex.org/W2999631700","https://openalex.org/W3006022816","https://openalex.org/W3037274972","https://openalex.org/W4214754761","https://openalex.org/W6755679857"],"related_works":["https://openalex.org/W1989021204","https://openalex.org/W3159485585","https://openalex.org/W4377942519","https://openalex.org/W2979441047","https://openalex.org/W2136627381","https://openalex.org/W159495055","https://openalex.org/W3125472033","https://openalex.org/W4297154044","https://openalex.org/W7099906663","https://openalex.org/W4306970958"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":92},{"year":2025,"cited_by_count":112},{"year":2024,"cited_by_count":113},{"year":2023,"cited_by_count":103},{"year":2022,"cited_by_count":110},{"year":2021,"cited_by_count":133},{"year":2020,"cited_by_count":61},{"year":2019,"cited_by_count":8}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2019-10-18T00:00:00"}