{"id":"https://openalex.org/W2979035906","doi":"https://doi.org/10.1371/journal.pone.0223269","title":"Genomic and metabolic differences between Pseudomonas putida populations inhabiting sugarcane rhizosphere or bulk soil","display_name":"Genomic and metabolic differences between Pseudomonas putida populations inhabiting sugarcane rhizosphere or bulk soil","publication_year":2019,"publication_date":"2019-10-03","ids":{"openalex":"https://openalex.org/W2979035906","doi":"https://doi.org/10.1371/journal.pone.0223269","mag":"2979035906","pmid":"https://pubmed.ncbi.nlm.nih.gov/31581220","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/6776310"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pone.0223269","doi":"https://doi.org/10.1371/journal.pone.0223269","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0223269","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0223269&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS ONE","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0223269&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075133620","display_name":"Lucas Dantas Lopes","orcid":"https://orcid.org/0000-0002-6355-3599","observed_orcids":["https://orcid.org/0000-0002-6355-3599"]},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]},{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR","US"],"is_corresponding":true,"raw_author_name":"Lucas Dantas Lopes","raw_affiliation_strings":["Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, United States of America","Department of Soil Science, \"Luiz de Queiroz\" College of Agriculture, University of S\u00e3o Paulo, Piracicaba, SP, Brazil"],"raw_orcid":"https://orcid.org/0000-0002-6355-3599","affiliations":[{"raw_affiliation_string":"Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, United States of America","institution_ids":["https://openalex.org/I131249849"]},{"raw_affiliation_string":"Department of Soil Science, \"Luiz de Queiroz\" College of Agriculture, University of S\u00e3o Paulo, Piracicaba, SP, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041290313","display_name":"Alexandra J. Weisberg","orcid":"https://orcid.org/0000-0002-0045-1368","observed_orcids":["https://orcid.org/0000-0002-0045-1368"]},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alexandra J. Weisberg","raw_affiliation_strings":["Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, United States of America","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028492434","display_name":"Edward W. Davis","orcid":"https://orcid.org/0000-0003-1229-4272","observed_orcids":["https://orcid.org/0000-0003-1229-4272"]},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Edward W. Davis","raw_affiliation_strings":["Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, United States of America","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053180728","display_name":"Camila de Souza Varize","orcid":"https://orcid.org/0000-0001-5312-7150","observed_orcids":["https://orcid.org/0000-0001-5312-7150"]},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Camila de S. Varize","raw_affiliation_strings":["Department of Soil Science, \"Luiz de Queiroz\" College of Agriculture, University of S\u00e3o Paulo, Piracicaba, SP, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Soil Science, \"Luiz de Queiroz\" College of Agriculture, University of S\u00e3o Paulo, Piracicaba, SP, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050560282","display_name":"Michele de C\u00e1ssia Pereira e Silva","orcid":"https://orcid.org/0000-0002-6426-8474","observed_orcids":["https://orcid.org/0000-0002-6426-8474"]},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Michele de C. Pereira e Silva","raw_affiliation_strings":["Department of Soil Science, \"Luiz de Queiroz\" College of Agriculture, University of S\u00e3o Paulo, Piracicaba, SP, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Soil Science, \"Luiz de Queiroz\" College of Agriculture, University of S\u00e3o Paulo, Piracicaba, SP, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041306627","display_name":"Jeff H. Chang","orcid":"https://orcid.org/0000-0002-1833-0695","observed_orcids":["https://orcid.org/0000-0002-1833-0695"]},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jeff H. Chang","raw_affiliation_strings":["Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, United States of America","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059220293","display_name":"Joyce E. Loper","orcid":"https://orcid.org/0000-0003-3501-5969","observed_orcids":["https://orcid.org/0000-0003-3501-5969"]},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Joyce E. Loper","raw_affiliation_strings":["Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, United States of America","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008446599","display_name":"Fernando Dini Andreote","orcid":"https://orcid.org/0000-0002-9883-9968","observed_orcids":["https://orcid.org/0000-0002-9883-9968"]},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Fernando D. Andreote","raw_affiliation_strings":["Department of Soil Science, \"Luiz de Queiroz\" College of Agriculture, University of S\u00e3o Paulo, Piracicaba, SP, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Soil Science, \"Luiz de Queiroz\" College of Agriculture, University of S\u00e3o Paulo, Piracicaba, SP, Brazil","institution_ids":["https://openalex.org/I17974374"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5008446599","https://openalex.org/A5028492434","https://openalex.org/A5041290313","https://openalex.org/A5041306627","https://openalex.org/A5050560282","https://openalex.org/A5053180728","https://openalex.org/A5059220293","https://openalex.org/A5075133620"],"corresponding_institution_ids":["https://openalex.org/I131249849","https://openalex.org/I17974374"],"apc_list":{"value":1595,"currency":"USD","value_usd":1595},"apc_paid":{"value":1595,"currency":"USD","value_usd":1595},"fwci":1.0698,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.77600602,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"14","issue":"10","first_page":"e0223269","last_page":"e0223269"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.8417999744415283,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.8417999744415283,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.11919999867677689,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.012400000356137753,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pseudomonas-putida","display_name":"Pseudomonas putida","score":1.0},{"id":"https://openalex.org/keywords/sugarcane-rhizosphere","display_name":"sugarcane rhizosphere","score":0.9860000014305115},{"id":"https://openalex.org/keywords/bulk-soil","display_name":"bulk soil","score":0.9440000057220459},{"id":"https://openalex.org/keywords/population-genomics","display_name":"population genomics","score":0.7889999747276306},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"comparative genomics","score":0.8870000243186951},{"id":"https://openalex.org/keywords/phylogenomics","display_name":"phylogenomics","score":0.9129999876022339},{"id":"https://openalex.org/keywords/cellulose-biosynthesis","display_name":"cellulose biosynthesis","score":0.953000009059906},{"id":"https://openalex.org/keywords/metabolic-profiling","display_name":"metabolite profiling","score":0.5210000276565552},{"id":"https://openalex.org/keywords/rhizosphere-bacteria","display_name":"rhizosphere bacteria","score":0.6690000295639038}],"concepts":[{"id":"https://openalex.org/C86626682","wikidata":"https://www.wikidata.org/wiki/Q1124578","display_name":"Rhizosphere","level":3,"score":0.98554527759552},{"id":"https://openalex.org/C2780543182","wikidata":"https://www.wikidata.org/wiki/Q2738168","display_name":"Pseudomonas putida","level":3,"score":0.7856680154800415},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7659115195274353},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5895668268203735},{"id":"https://openalex.org/C33411773","wikidata":"https://www.wikidata.org/wiki/Q4996488","display_name":"Bulk soil","level":4,"score":0.5424502491950989},{"id":"https://openalex.org/C172365310","wikidata":"https://www.wikidata.org/wiki/Q7554937","display_name":"Soil microbiology","level":3,"score":0.5129308700561523},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.4342300295829773},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.22252193093299866},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19135421514511108},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000898","descriptor_name":"Antibiosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012988","descriptor_name":"Soil Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016958","descriptor_name":"Pseudomonas putida","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016958","descriptor_name":"Pseudomonas putida","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D031786","descriptor_name":"Saccharum","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058441","descriptor_name":"Rhizosphere","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pone.0223269","doi":"https://doi.org/10.1371/journal.pone.0223269","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0223269","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0223269&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS ONE","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6776310","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6776310","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS One","raw_type":"Text"},{"id":"pmid:31581220","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31581220","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PloS one","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:44d73de2e1354495877cb68a4987150f","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/44d73de2e1354495877cb68a4987150f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS ONE, Vol 14, Iss 10, p e0223269 (2019)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/9935021","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Genomic_and_metabolic_differences_between_i_Pseudomonas_putida_i_populations_inhabiting_sugarcane_rhizosphere_or_bulk_soil/9935021","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pone.0223269","doi":"https://doi.org/10.1371/journal.pone.0223269","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0223269","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0223269&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS ONE","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1337698996","display_name":null,"funder_award_id":"2014-51181-22384","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G2471202540","display_name":null,"funder_award_id":"302168/2014\u20101","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G2604025436","display_name":"Microbial consortia for biowaste management: life cycle analysis of novel strategies of bioconversion (MICROWASTE)","funder_award_id":"13/50353-7","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G5215739932","display_name":null,"funder_award_id":"2011-67019-30192","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G5905040377","display_name":null,"funder_award_id":"2014-1","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G6010655152","display_name":null,"funder_award_id":"2011\u201067019\u201030192","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G7480064622","display_name":null,"funder_award_id":"2014-51181-22384","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G7760019652","display_name":null,"funder_award_id":"67019","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"}],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2979035906.pdf","grobid_xml":"https://content.openalex.org/works/W2979035906.grobid-xml"},"referenced_works_count":69,"referenced_works":["https://openalex.org/W310318812","https://openalex.org/W1476478267","https://openalex.org/W1491637723","https://openalex.org/W1509411637","https://openalex.org/W1514577840","https://openalex.org/W1798946712","https://openalex.org/W1934798267","https://openalex.org/W1948404504","https://openalex.org/W1964135138","https://openalex.org/W1967099411","https://openalex.org/W1970735026","https://openalex.org/W1977601452","https://openalex.org/W1984320817","https://openalex.org/W1984945127","https://openalex.org/W1994234791","https://openalex.org/W2008856488","https://openalex.org/W2015314066","https://openalex.org/W2019075610","https://openalex.org/W2028212995","https://openalex.org/W2030568060","https://openalex.org/W2041579725","https://openalex.org/W2043103313","https://openalex.org/W2046523632","https://openalex.org/W2060411194","https://openalex.org/W2064971934","https://openalex.org/W2070512227","https://openalex.org/W2074856830","https://openalex.org/W2081026790","https://openalex.org/W2082376470","https://openalex.org/W2095178034","https://openalex.org/W2101291993","https://openalex.org/W2102471114","https://openalex.org/W2103037419","https://openalex.org/W2105333758","https://openalex.org/W2106666964","https://openalex.org/W2108047624","https://openalex.org/W2109587810","https://openalex.org/W2110307024","https://openalex.org/W2115658273","https://openalex.org/W2116206245","https://openalex.org/W2123954384","https://openalex.org/W2138439355","https://openalex.org/W2140499464","https://openalex.org/W2141052558","https://openalex.org/W2146290595","https://openalex.org/W2149017136","https://openalex.org/W2153109441","https://openalex.org/W2155090350","https://openalex.org/W2160378127","https://openalex.org/W2160716612","https://openalex.org/W2167517017","https://openalex.org/W2179497425","https://openalex.org/W2229908198","https://openalex.org/W2266044792","https://openalex.org/W2278535118","https://openalex.org/W2293812683","https://openalex.org/W2300328684","https://openalex.org/W2336330109","https://openalex.org/W2343381601","https://openalex.org/W2498485322","https://openalex.org/W2510995018","https://openalex.org/W2515212665","https://openalex.org/W2522101239","https://openalex.org/W2564261000","https://openalex.org/W2703856046","https://openalex.org/W2762188151","https://openalex.org/W2883139302","https://openalex.org/W2884080534","https://openalex.org/W4301083018"],"related_works":["https://openalex.org/W2883139302","https://openalex.org/W7120728571","https://openalex.org/W2515212665","https://openalex.org/W2069698313","https://openalex.org/W2015497687","https://openalex.org/W3099588904","https://openalex.org/W7160020473","https://openalex.org/W1954179112","https://openalex.org/W2086671231","https://openalex.org/W2024766650"],"abstract_inverted_index":{"Pseudomonas":[0,9],"putida":[1,37,81,188],"is":[2],"one":[3],"of":[4,8,34,78,130,149,186],"13":[5],"major":[6],"groups":[7],"spp.":[10],"and":[11,18,27,55,89,123,132,167,180,189,192],"contains":[12],"numerous":[13],"species":[14],"occupying":[15],"diverse":[16],"niches":[17],"performing":[19],"many":[20],"functions":[21,101,193],"such":[22,118],"as":[23,119],"plant":[24],"growth":[25],"promotion":[26],"bioremediation.":[28],"Here":[29],"we":[30],"compared":[31],"a":[32,47],"set":[33],"19":[35],"P.":[36,80,187],"isolates":[38,92,166],"obtained":[39],"from":[40,60],"sugarcane":[41,178],"rhizosphere":[42,65,88,113,131,154,165,179],"or":[43,114],"bulk":[44,67,90,115,133,171,181],"soil":[45,68,91,116,134,172,182,198],"using":[46],"population":[48],"genomics":[49,97],"approach":[50],"aiming":[51],"to":[52],"assess":[53],"genomic":[54],"metabolic":[56,128],"differences":[57],"between":[58,105],"populations":[59,135,185],"these":[61],"habitats.":[62],"Phylogenomics":[63],"placed":[64],"versus":[66],"strains":[69,77],"in":[70,111,163,169],"separate":[71],"clades":[72],"clustering":[73],"with":[74,196],"different":[75,104,184],"type":[76],"the":[79,87,112,146,153,170],"group.":[82],"Multivariate":[83],"analyses":[84],"indicated":[85],"that":[86,177],"form":[93],"distinct":[94],"populations.":[95],"Comparative":[96],"identified":[98,190],"several":[99],"genetic":[100],"(GO-terms)":[102],"significantly":[103],"populations,":[106],"including":[107],"some":[108],"exclusively":[109],"present":[110,162],"strains,":[117],"D-galactonic":[120],"acid":[121,151],"catabolism":[122,158],"cellulose":[124],"biosynthesis,":[125],"respectively.":[126],"The":[127],"profiles":[129],"analyzed":[136],"by":[137,145,152],"Biolog":[138],"Ecoplates":[139],"also":[140],"differ":[141],"significantly,":[142],"most":[143],"notably":[144],"higher":[147],"oxidation":[148],"D-galactonic/D-galacturonic":[150],"population.":[155,173],"Accordingly,":[156],"D-galactonate":[157],"operon":[159],"(dgo)":[160],"was":[161],"all":[164],"absent":[168],"This":[174],"study":[175],"showed":[176],"harbor":[183],"genes":[191],"potentially":[194],"associated":[195],"their":[197],"niches.":[199]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1}],"updated_date":"2026-11-03T10:50:19.383937","created_date":"2019-10-10T00:00:00"}