{"id":"https://openalex.org/W2977360892","doi":"https://doi.org/10.1002/prot.25819","title":"Assessing the accuracy of contact predictions in CASP13","display_name":"Assessing the accuracy of contact predictions in CASP13","publication_year":2019,"publication_date":"2019-10-06","ids":{"openalex":"https://openalex.org/W2977360892","doi":"https://doi.org/10.1002/prot.25819","mag":"2977360892","pmid":"https://pubmed.ncbi.nlm.nih.gov/31587357","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/6851495"},"language":"en","primary_location":{"id":"doi:10.1002/prot.25819","doi":"https://doi.org/10.1002/prot.25819","is_oa":false,"landing_page_url":"https://doi.org/10.1002/prot.25819","pdf_url":null,"source":{"id":"https://openalex.org/S121161810","display_name":"Proteins Structure Function and Bioinformatics","issn_l":"0887-3585","issn":["0887-3585","1097-0134"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proteins: Structure, Function, and Bioinformatics","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6851495","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071209946","display_name":"Rojan Shrestha","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I129975664","display_name":"Albert Einstein College of Medicine","ror":"https://ror.org/05cf8a891","country_code":"US","type":"education","lineage":["https://openalex.org/I129975664","https://openalex.org/I4210112371"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rojan Shrestha","raw_affiliation_strings":["Department of Systems and Computational Biology, and Department of Biochemistry Albert Einstein College of Medicine Bronx New York"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Systems and Computational Biology, and Department of Biochemistry Albert Einstein College of Medicine Bronx New York","institution_ids":["https://openalex.org/I129975664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061268807","display_name":"Eduardo J. Fajardo","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I129975664","display_name":"Albert Einstein College of Medicine","ror":"https://ror.org/05cf8a891","country_code":"US","type":"education","lineage":["https://openalex.org/I129975664","https://openalex.org/I4210112371"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eduardo Fajardo","raw_affiliation_strings":["Department of Systems and Computational Biology, and Department of Biochemistry Albert Einstein College of Medicine Bronx New York"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Systems and Computational Biology, and Department of Biochemistry Albert Einstein College of Medicine Bronx New York","institution_ids":["https://openalex.org/I129975664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027391620","display_name":"Nelson Gil","orcid":"https://orcid.org/0000-0002-0771-2292","observed_orcids":["https://orcid.org/0000-0002-0771-2292"]},"institutions":[{"id":"https://openalex.org/I129975664","display_name":"Albert Einstein College of Medicine","ror":"https://ror.org/05cf8a891","country_code":"US","type":"education","lineage":["https://openalex.org/I129975664","https://openalex.org/I4210112371"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nelson Gil","raw_affiliation_strings":["Department of Systems and Computational Biology, and Department of Biochemistry Albert Einstein College of Medicine Bronx New York"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Systems and Computational Biology, and Department of Biochemistry Albert Einstein College of Medicine Bronx New York","institution_ids":["https://openalex.org/I129975664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074974770","display_name":"Krzysztof A. Fidelis","orcid":"https://orcid.org/0000-0002-8061-412X","observed_orcids":["https://orcid.org/0000-0002-8061-412X"]},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Krzysztof Fidelis","raw_affiliation_strings":["Genome Center University of California Davis California"],"raw_orcid":"https://orcid.org/0000-0002-8061-412X","affiliations":[{"raw_affiliation_string":"Genome Center University of California Davis California","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046112262","display_name":"Andriy Kryshtafovych","orcid":"https://orcid.org/0000-0001-5066-7178","observed_orcids":["https://orcid.org/0000-0001-5066-7178"]},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andriy Kryshtafovych","raw_affiliation_strings":["Genome Center University of California Davis California"],"raw_orcid":"https://orcid.org/0000-0001-5066-7178","affiliations":[{"raw_affiliation_string":"Genome Center University of California Davis California","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063408550","display_name":"Bohdan Monastyrskyy","orcid":"https://orcid.org/0000-0002-4803-0378","observed_orcids":["https://orcid.org/0000-0002-4803-0378"]},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bohdan Monastyrskyy","raw_affiliation_strings":["Genome Center University of California Davis California"],"raw_orcid":"https://orcid.org/0000-0002-4803-0378","affiliations":[{"raw_affiliation_string":"Genome Center University of California Davis California","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040379692","display_name":"Andr\u00e1s Fiser","orcid":"https://orcid.org/0000-0003-0085-5335","observed_orcids":["https://orcid.org/0000-0003-0085-5335"]},"institutions":[{"id":"https://openalex.org/I129975664","display_name":"Albert Einstein College of Medicine","ror":"https://ror.org/05cf8a891","country_code":"US","type":"education","lineage":["https://openalex.org/I129975664","https://openalex.org/I4210112371"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andras Fiser","raw_affiliation_strings":["Department of Systems and Computational Biology, and Department of Biochemistry Albert Einstein College of Medicine Bronx New York"],"raw_orcid":"https://orcid.org/0000-0003-0085-5335","affiliations":[{"raw_affiliation_string":"Department of Systems and Computational Biology, and Department of Biochemistry Albert Einstein College of Medicine Bronx New York","institution_ids":["https://openalex.org/I129975664"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5040379692"],"corresponding_institution_ids":["https://openalex.org/I129975664"],"apc_list":{"value":3800,"currency":"USD","value_usd":3800},"apc_paid":null,"fwci":4.7131,"has_fulltext":true,"cited_by_count":62,"citation_normalized_percentile":{"value":0.96568322,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"87","issue":"12","first_page":"1058","last_page":"1068"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9735999703407288,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9735999703407288,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.014600000344216824,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.002899999963119626,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-tertiary-structure-prediction","display_name":"protein tertiary structure prediction","score":0.7630000114440918},{"id":"https://openalex.org/keywords/contact-prediction","display_name":"contact prediction","score":0.7369999885559082},{"id":"https://openalex.org/keywords/casp13","display_name":"CASP13","score":0.9430000185966492},{"id":"https://openalex.org/keywords/deep-neural-network","display_name":"deep neural network","score":0.8619999885559082},{"id":"https://openalex.org/keywords/sequence-based-structure-prediction","display_name":"sequence-based structure prediction","score":0.5440000295639038},{"id":"https://openalex.org/keywords/f-score","display_name":"F-score","score":0.5450000166893005},{"id":"https://openalex.org/keywords/structure-modeling","display_name":"structure modeling","score":0.414000004529953}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6422032713890076},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5715610980987549},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5113043785095215},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4911286532878876},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.42020317912101746},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.41639959812164307},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.39938583970069885},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35089194774627686},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3248615264892578},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.24138182401657104},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15879565477371216},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003226","descriptor_name":"Congresses as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003226","descriptor_name":"Congresses as Topic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1002/prot.25819","doi":"https://doi.org/10.1002/prot.25819","is_oa":false,"landing_page_url":"https://doi.org/10.1002/prot.25819","pdf_url":null,"source":{"id":"https://openalex.org/S121161810","display_name":"Proteins Structure Function and Bioinformatics","issn_l":"0887-3585","issn":["0887-3585","1097-0134"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proteins: Structure, Function, and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31587357","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31587357","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proteins","raw_type":"Conference Proceedings"},{"id":"pmh:oai:pubmedcentral.nih.gov:6851495","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6851495","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Proteins","raw_type":"Text"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt27n019dx","doi":null,"is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/27n019dx","pdf_url":"https://escholarship.org/content/qt27n019dx/qt27n019dx.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proteins Structure Function and Bioinformatics, vol 87, iss 12","raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:6851495","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6851495","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Proteins","raw_type":"Text"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G3177227261","display_name":null,"funder_award_id":"GM118709","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4358409836","display_name":"Molecular basis of receptor-ligand recognition in the Immunological Synapse","funder_award_id":"R01GM118709","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5725321218","display_name":"Interdisciplinary protein engineering approach to design high affinity antibodies for flaviviruses","funder_award_id":"R01AI141816","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G7409299585","display_name":null,"funder_award_id":"GM100482","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G868020568","display_name":null,"funder_award_id":"AI141816","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G9000920723","display_name":"Center for Critical Assessment of Structure Prediction (CASP)","funder_award_id":"R01GM100482","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":66,"referenced_works":["https://openalex.org/W1557587996","https://openalex.org/W1871470604","https://openalex.org/W1906125546","https://openalex.org/W1979275705","https://openalex.org/W1979762151","https://openalex.org/W1985546344","https://openalex.org/W1986049071","https://openalex.org/W2002129624","https://openalex.org/W2006796203","https://openalex.org/W2008545402","https://openalex.org/W2008708467","https://openalex.org/W2013425283","https://openalex.org/W2015208937","https://openalex.org/W2032443627","https://openalex.org/W2033806446","https://openalex.org/W2034177352","https://openalex.org/W2036634847","https://openalex.org/W2039890138","https://openalex.org/W2051210555","https://openalex.org/W2066757437","https://openalex.org/W2075756833","https://openalex.org/W2080810808","https://openalex.org/W2093769098","https://openalex.org/W2096569410","https://openalex.org/W2099715859","https://openalex.org/W2101414350","https://openalex.org/W2104467962","https://openalex.org/W2109766743","https://openalex.org/W2112012991","https://openalex.org/W2113178668","https://openalex.org/W2113358325","https://openalex.org/W2122520496","https://openalex.org/W2130883613","https://openalex.org/W2133549024","https://openalex.org/W2136799255","https://openalex.org/W2141988096","https://openalex.org/W2143035592","https://openalex.org/W2144152753","https://openalex.org/W2150926737","https://openalex.org/W2158714788","https://openalex.org/W2163176800","https://openalex.org/W2166701319","https://openalex.org/W2171641243","https://openalex.org/W2176135968","https://openalex.org/W2228548487","https://openalex.org/W2395745621","https://openalex.org/W2555451376","https://openalex.org/W2615785200","https://openalex.org/W2620385970","https://openalex.org/W2625681382","https://openalex.org/W2742834898","https://openalex.org/W2754054476","https://openalex.org/W2765298570","https://openalex.org/W2765742208","https://openalex.org/W2780845733","https://openalex.org/W2801109052","https://openalex.org/W2810846340","https://openalex.org/W2919115771","https://openalex.org/W2944535254","https://openalex.org/W2944959599","https://openalex.org/W2949867299","https://openalex.org/W2951621517","https://openalex.org/W2951639995","https://openalex.org/W2960589734","https://openalex.org/W3198971594","https://openalex.org/W4230638849"],"related_works":["https://openalex.org/W4205367107","https://openalex.org/W6977203344","https://openalex.org/W3174929568","https://openalex.org/W2765742208","https://openalex.org/W2951639995","https://openalex.org/W2971003495","https://openalex.org/W2950334474","https://openalex.org/W2759105798","https://openalex.org/W2765298570","https://openalex.org/W2970594786"],"abstract_inverted_index":{"The":[0,40],"accuracy":[1],"of":[2,21,42,59,86,117,130],"sequence-based":[3],"tertiary":[4],"contact":[5],"predictions":[6],"was":[7,35],"assessed":[8],"in":[9,24,48,62,127,161],"a":[10,68,76],"blind":[11],"prediction":[12,25],"experiment":[13],"at":[14,73],"the":[15,44,49,56,60,70,83,87,97,128,138,156],"CASP13":[16,88],"meeting.":[17],"After":[18],"4":[19],"years":[20,38],"significant":[22],"improvements":[23],"accuracy,":[26],"another":[27],"dramatic":[28],"advance":[29,160],"has":[30,64],"taken":[31],"place":[32],"since":[33],"CASP12":[34,74],"held":[36],"2":[37],"ago.":[39],"precision":[41,78],"predicting":[43],"top":[45,84,98],"L/5":[46],"contacts":[47],"free":[50],"modeling":[51],"category,":[52],"where":[53],"L":[54,146],"is":[55,141,172],"corresponding":[57],"length":[58],"protein":[61],"residues,":[63],"exceeded":[65],"70%.":[66],"As":[67],"comparison,":[69],"best-performing":[71],"group":[72],"with":[75],"47%":[77],"would":[79],"have":[80],"finished":[81],"below":[82],"1/3":[85],"groups.":[89],"Extensively":[90],"trained":[91],"deep":[92],"neural":[93],"network":[94],"approaches":[95],"dominate":[96],"performing":[99],"algorithms,":[100],"which":[101],"appear":[102],"to":[103],"efficiently":[104],"integrate":[105],"information":[106],"on":[107,145],"coevolving":[108],"residues":[109],"and":[110,120,159],"interacting":[111],"fragments":[112],"or":[113],"possibly":[114],"utilize":[115],"memories":[116],"sequence":[118],"similarities":[119],"sometimes":[121],"can":[122],"deliver":[123],"accurate":[124],"results":[125],"even":[126],"absence":[129],"virtually":[131],"any":[132],"target":[133],"specific":[134],"evolutionary":[135],"information.":[136],"If":[137],"current":[139],"performance":[140],"evaluated":[142],"by":[143],"F-score":[144],"contacts,":[147],"it":[148],"stands":[149],"around":[150],"24%":[151],"right":[152],"now,":[153],"which,":[154],"despite":[155],"tremendous":[157],"impact":[158],"improving":[162],"its":[163],"utility":[164],"for":[165,176],"structure":[166],"modeling,":[167],"also":[168],"suggests":[169],"that":[170],"there":[171],"much":[173],"room":[174],"left":[175],"further":[177],"improvement.":[178]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":28},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":3}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2019-10-10T00:00:00"}