{"id":"https://openalex.org/W2966470689","doi":"https://doi.org/10.1093/gigascience/giz093","title":"An integrated respiratory microbial gene catalogue to better understand the microbial aetiology of Mycoplasma pneumoniae pneumonia","display_name":"An integrated respiratory microbial gene catalogue to better understand the microbial aetiology of Mycoplasma pneumoniae pneumonia","publication_year":2019,"publication_date":"2019-07-31","ids":{"openalex":"https://openalex.org/W2966470689","doi":"https://doi.org/10.1093/gigascience/giz093","mag":"2966470689","pmid":"https://pubmed.ncbi.nlm.nih.gov/31367746","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/6669060"},"language":"en","primary_location":{"id":"doi:10.1093/gigascience/giz093","doi":"https://doi.org/10.1093/gigascience/giz093","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gigascience/giz093","pdf_url":"https://academic.oup.com/gigascience/article-pdf/8/8/giz093/29025748/giz093.pdf","source":{"id":"https://openalex.org/S2735135405","display_name":"GigaScience","issn_l":"2047-217X","issn":["2047-217X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"GigaScience","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/gigascience/article-pdf/8/8/giz093/29025748/giz093.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015324472","display_name":"Wenkui Dai","orcid":"https://orcid.org/0000-0002-9723-1416","observed_orcids":["https://orcid.org/0000-0002-9723-1416"]},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Wenkui Dai","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong, Hong Kong 999077, China"],"raw_orcid":"https://orcid.org/0000-0002-9723-1416","affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong, Hong Kong 999077, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100764917","display_name":"Heping Wang","orcid":"https://orcid.org/0000-0002-9527-1334","observed_orcids":["https://orcid.org/0000-0002-9527-1334"]},"institutions":[{"id":"https://openalex.org/I4210152664","display_name":"Shenzhen Children's Hospital","ror":"https://ror.org/0409k5a27","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210152664"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Heping Wang","raw_affiliation_strings":["Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China"],"raw_orcid":"https://orcid.org/0000-0002-9527-1334","affiliations":[{"raw_affiliation_string":"Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China","institution_ids":["https://openalex.org/I4210152664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022871374","display_name":"Qian Zhou","orcid":"https://orcid.org/0000-0002-8433-2875","observed_orcids":["https://orcid.org/0000-0002-8433-2875"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Qian Zhou","raw_affiliation_strings":["Department of Microbial Research, WeHealthGene Institute, Shenzhen 518000, China"],"raw_orcid":"https://orcid.org/0000-0002-8433-2875","affiliations":[{"raw_affiliation_string":"Department of Microbial Research, WeHealthGene Institute, Shenzhen 518000, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100365827","display_name":"Dongfang Li","orcid":"https://orcid.org/0000-0002-6587-2892","observed_orcids":["https://orcid.org/0000-0002-6587-2892"]},"institutions":[{"id":"https://openalex.org/I4210138186","display_name":"Wuhan National Laboratory for Optoelectronics","ror":"https://ror.org/03c9ncn37","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210138186"]},{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dongfang Li","raw_affiliation_strings":["Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, No. 1037 Luoyu Road, Wuhan 430074, China"],"raw_orcid":"https://orcid.org/0000-0002-6587-2892","affiliations":[{"raw_affiliation_string":"Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, No. 1037 Luoyu Road, Wuhan 430074, China","institution_ids":["https://openalex.org/I4210138186","https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101522765","display_name":"Xin Feng","orcid":"https://orcid.org/0000-0003-1853-7255","observed_orcids":["https://orcid.org/0000-0003-1853-7255"]},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Xin Feng","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong, Hong Kong 999077, China","Department of Microbial Research, WeHealthGene Institute, Shenzhen 518000, China"],"raw_orcid":"https://orcid.org/0000-0003-1853-7255","affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong, Hong Kong 999077, China","institution_ids":["https://openalex.org/I168719708"]},{"raw_affiliation_string":"Department of Microbial Research, WeHealthGene Institute, Shenzhen 518000, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100630909","display_name":"Zhenyu Yang","orcid":"https://orcid.org/0000-0001-7699-5743","observed_orcids":["https://orcid.org/0000-0001-7699-5743"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhenyu Yang","raw_affiliation_strings":["Department of Microbial Research, WeHealthGene Institute, Shenzhen 518000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbial Research, WeHealthGene Institute, Shenzhen 518000, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100773702","display_name":"Wenjian Wang","orcid":"https://orcid.org/0000-0001-9459-3764","observed_orcids":["https://orcid.org/0000-0001-9459-3764"]},"institutions":[{"id":"https://openalex.org/I4210152664","display_name":"Shenzhen Children's Hospital","ror":"https://ror.org/0409k5a27","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210152664"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenjian Wang","raw_affiliation_strings":["Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China"],"raw_orcid":"https://orcid.org/0000-0001-9459-3764","affiliations":[{"raw_affiliation_string":"Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China","institution_ids":["https://openalex.org/I4210152664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082679175","display_name":"Chuangzhao Qiu","orcid":"https://orcid.org/0000-0001-5560-0992","observed_orcids":["https://orcid.org/0000-0001-5560-0992"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chuangzhao Qiu","raw_affiliation_strings":["Department of Microbial Research, WeHealthGene Institute, Shenzhen 518000, China"],"raw_orcid":"https://orcid.org/0000-0001-5560-0992","affiliations":[{"raw_affiliation_string":"Department of Microbial Research, WeHealthGene Institute, Shenzhen 518000, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025322442","display_name":"Zhiwei Lu","orcid":"https://orcid.org/0000-0002-3982-3085","observed_orcids":["https://orcid.org/0000-0002-3982-3085"]},"institutions":[{"id":"https://openalex.org/I4210152664","display_name":"Shenzhen Children's Hospital","ror":"https://ror.org/0409k5a27","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210152664"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiwei Lu","raw_affiliation_strings":["Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China","institution_ids":["https://openalex.org/I4210152664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078761894","display_name":"Ximing Xu","orcid":"https://orcid.org/0000-0001-7094-0514","observed_orcids":["https://orcid.org/0000-0001-7094-0514"]},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ximing Xu","raw_affiliation_strings":["Institute of Statistics, Nankai University, No. 94 Weijin Road, Tianjin 300071, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Statistics, Nankai University, No. 94 Weijin Road, Tianjin 300071, China","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046400445","display_name":"Mengxuan Lyu","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Mengxuan Lyu","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong, Hong Kong 999077, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong, Hong Kong 999077, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060970004","display_name":"Gan Xie","orcid":"https://orcid.org/0000-0001-6041-2523","observed_orcids":["https://orcid.org/0000-0001-6041-2523"]},"institutions":[{"id":"https://openalex.org/I4210152664","display_name":"Shenzhen Children's Hospital","ror":"https://ror.org/0409k5a27","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210152664"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Gan Xie","raw_affiliation_strings":["Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China"],"raw_orcid":"https://orcid.org/0000-0001-6041-2523","affiliations":[{"raw_affiliation_string":"Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China","institution_ids":["https://openalex.org/I4210152664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036917855","display_name":"Yinhu Li","orcid":"https://orcid.org/0000-0001-6378-6571","observed_orcids":["https://orcid.org/0000-0001-6378-6571"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yinhu Li","raw_affiliation_strings":["Department of Microbial Research, WeHealthGene Institute, Shenzhen 518000, China"],"raw_orcid":"https://orcid.org/0000-0001-6378-6571","affiliations":[{"raw_affiliation_string":"Department of Microbial Research, WeHealthGene Institute, Shenzhen 518000, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087739194","display_name":"Yanmin Bao","orcid":"https://orcid.org/0000-0003-2610-2542","observed_orcids":["https://orcid.org/0000-0003-2610-2542"]},"institutions":[{"id":"https://openalex.org/I4210152664","display_name":"Shenzhen Children's Hospital","ror":"https://ror.org/0409k5a27","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210152664"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanmin Bao","raw_affiliation_strings":["Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China","institution_ids":["https://openalex.org/I4210152664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100649504","display_name":"Yanhong Liu","orcid":"https://orcid.org/0000-0003-0749-2602","observed_orcids":["https://orcid.org/0000-0003-0749-2602"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yanhong Liu","raw_affiliation_strings":["Department of Microbial Research, WeHealthGene Institute, Shenzhen 518000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbial Research, WeHealthGene Institute, Shenzhen 518000, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047690253","display_name":"Kunling Shen","orcid":"https://orcid.org/0000-0001-7191-9442","observed_orcids":["https://orcid.org/0000-0001-7191-9442"]},"institutions":[{"id":"https://openalex.org/I4210144404","display_name":"Beijing Children\u2019s Hospital","ror":"https://ror.org/04skmn292","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210144404"]},{"id":"https://openalex.org/I4210152664","display_name":"Shenzhen Children's Hospital","ror":"https://ror.org/0409k5a27","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210152664"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kunling Shen","raw_affiliation_strings":["Department of Respiratory Diseases, Beijing Children's Hospital, Beijing 100045, China","Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Respiratory Diseases, Beijing Children's Hospital, Beijing 100045, China","institution_ids":["https://openalex.org/I4210144404"]},{"raw_affiliation_string":"Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China","institution_ids":["https://openalex.org/I4210152664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073767435","display_name":"Kaihu Yao","orcid":"https://orcid.org/0000-0003-1548-8670","observed_orcids":["https://orcid.org/0000-0003-1548-8670"]},"institutions":[{"id":"https://openalex.org/I4210144404","display_name":"Beijing Children\u2019s Hospital","ror":"https://ror.org/04skmn292","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210144404"]},{"id":"https://openalex.org/I4210152664","display_name":"Shenzhen Children's Hospital","ror":"https://ror.org/0409k5a27","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210152664"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kaihu Yao","raw_affiliation_strings":["Department of Respiratory Diseases, Beijing Children's Hospital, Beijing 100045, China","Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Respiratory Diseases, Beijing Children's Hospital, Beijing 100045, China","institution_ids":["https://openalex.org/I4210144404"]},{"raw_affiliation_string":"Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China","institution_ids":["https://openalex.org/I4210152664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100599551","display_name":"Xikang Feng","orcid":"https://orcid.org/0000-0003-4029-3795","observed_orcids":["https://orcid.org/0000-0003-4029-3795"]},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Xikang Feng","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong, Hong Kong 999077, China","Department of Microbial Research, WeHealthGene Institute, Shenzhen 518000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong, Hong Kong 999077, China","institution_ids":["https://openalex.org/I168719708"]},{"raw_affiliation_string":"Department of Microbial Research, WeHealthGene Institute, Shenzhen 518000, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101433340","display_name":"Yonghong Yang","orcid":"https://orcid.org/0000-0002-8423-1652","observed_orcids":["https://orcid.org/0000-0002-8423-1652"]},"institutions":[{"id":"https://openalex.org/I4210144404","display_name":"Beijing Children\u2019s Hospital","ror":"https://ror.org/04skmn292","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210144404"]},{"id":"https://openalex.org/I4210152664","display_name":"Shenzhen Children's Hospital","ror":"https://ror.org/0409k5a27","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210152664"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yonghong Yang","raw_affiliation_strings":["Department of Microbial Research, WeHealthGene Institute, Shenzhen 518000, China","Department of Respiratory Diseases, Beijing Children's Hospital, Beijing 100045, China","Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China"],"raw_orcid":"https://orcid.org/0000-0002-8423-1652","affiliations":[{"raw_affiliation_string":"Department of Microbial Research, WeHealthGene Institute, Shenzhen 518000, China","institution_ids":[]},{"raw_affiliation_string":"Department of Respiratory Diseases, Beijing Children's Hospital, Beijing 100045, China","institution_ids":["https://openalex.org/I4210144404"]},{"raw_affiliation_string":"Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China","institution_ids":["https://openalex.org/I4210152664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015061573","display_name":"Ke Zhou","orcid":"https://orcid.org/0000-0002-2161-8796","observed_orcids":["https://orcid.org/0000-0002-2161-8796","https://orcid.org/0000-0003-3346-2749"]},"institutions":[{"id":"https://openalex.org/I4210138186","display_name":"Wuhan National Laboratory for Optoelectronics","ror":"https://ror.org/03c9ncn37","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210138186"]},{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ke Zhou","raw_affiliation_strings":["Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, No. 1037 Luoyu Road, Wuhan 430074, China"],"raw_orcid":"https://orcid.org/0000-0002-2161-8796","affiliations":[{"raw_affiliation_string":"Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, No. 1037 Luoyu Road, Wuhan 430074, China","institution_ids":["https://openalex.org/I4210138186","https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083428910","display_name":"Shuai Cheng Li","orcid":"https://orcid.org/0000-0001-6246-6349","observed_orcids":["https://orcid.org/0000-0001-6246-6349","https://orcid.org/0000-0002-0620-9353"]},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Shuaicheng Li","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong, Hong Kong 999077, China"],"raw_orcid":"https://orcid.org/0000-0001-6246-6349","affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong, Hong Kong 999077, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023909153","display_name":"Yuejie Zheng","orcid":"https://orcid.org/0000-0003-1094-2395","observed_orcids":["https://orcid.org/0000-0003-1094-2395"]},"institutions":[{"id":"https://openalex.org/I4210152664","display_name":"Shenzhen Children's Hospital","ror":"https://ror.org/0409k5a27","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210152664"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yuejie Zheng","raw_affiliation_strings":["Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China"],"raw_orcid":"https://orcid.org/0000-0003-1094-2395","affiliations":[{"raw_affiliation_string":"Department of Respiratory Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China","institution_ids":["https://openalex.org/I4210152664"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5023909153","https://openalex.org/A5083428910"],"corresponding_institution_ids":["https://openalex.org/I168719708","https://openalex.org/I4210152664"],"apc_list":{"value":2638,"currency":"USD","value_usd":2638},"apc_paid":{"value":2638,"currency":"USD","value_usd":2638},"fwci":1.6389,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.79340314,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"8","issue":"8","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11688","display_name":"Microbial infections and disease research","score":0.9541000127792358,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11688","display_name":"Microbial infections and disease research","score":0.9541000127792358,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10654","display_name":"Pneumonia and Respiratory Infections","score":0.023600000888109207,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.00419999985024333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mycoplasma-pneumoniae-pneumonia","display_name":"Mycoplasma pneumoniae pneumonia","score":0.9629999995231628},{"id":"https://openalex.org/keywords/respiratory-microbiome","display_name":"airway microbiome","score":0.8840000033378601},{"id":"https://openalex.org/keywords/oropharyngeal-microbiota","display_name":"oropharyngeal microbiota","score":0.890999972820282},{"id":"https://openalex.org/keywords/childhood-pneumonia","display_name":"pediatric pneumonia","score":0.6470000147819519},{"id":"https://openalex.org/keywords/microbial-co-occurrence-networks","display_name":"microbial co-occurrence networks","score":0.7820000052452087},{"id":"https://openalex.org/keywords/antibiotic-resistance-genes","display_name":"antibiotic resistance genes","score":0.6869999766349792},{"id":"https://openalex.org/keywords/virulence-genes","display_name":"virulence genes","score":0.9380000233650208},{"id":"https://openalex.org/keywords/macrolide-resistance","display_name":"macrolide resistance","score":0.9559999704360962},{"id":"https://openalex.org/keywords/23s-rrna-gene","display_name":"23S rRNA gene","score":0.8529999852180481},{"id":"https://openalex.org/keywords/host-microbe-interactions","display_name":"host-microbe interactions","score":0.8389999866485596},{"id":"https://openalex.org/keywords/metagenome-assembled-genomes","display_name":"metagenome-assembled genomes","score":0.6769999861717224},{"id":"https://openalex.org/keywords/prevotella","display_name":"Prevotella","score":0.7089999914169312},{"id":"https://openalex.org/keywords/streptococcus","display_name":"Streptococcus","score":0.9300000071525574},{"id":"https://openalex.org/keywords/staphylococcus","display_name":"Staphylococcus","score":0.9909999966621399}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7986075282096863},{"id":"https://openalex.org/C2779215961","wikidata":"https://www.wikidata.org/wiki/Q310904","display_name":"Mycoplasma pneumoniae","level":3,"score":0.7414453625679016},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7028135657310486},{"id":"https://openalex.org/C2781253189","wikidata":"https://www.wikidata.org/wiki/Q221179","display_name":"Streptococcus pneumoniae","level":3,"score":0.6745617389678955},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.6505115032196045},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.5753671526908875},{"id":"https://openalex.org/C40749294","wikidata":"https://www.wikidata.org/wiki/Q4631553","display_name":"23S ribosomal RNA","level":5,"score":0.5685634613037109},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.47362110018730164},{"id":"https://openalex.org/C2777914695","wikidata":"https://www.wikidata.org/wiki/Q12192","display_name":"Pneumonia","level":2,"score":0.4725101888179779},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3218751549720764},{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.2214651107788086},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.126267671585083},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.06382843852043152},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0},{"id":"https://openalex.org/C88478588","wikidata":"https://www.wikidata.org/wiki/Q42244","display_name":"Ribosome","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D002648","descriptor_name":"Child","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002675","descriptor_name":"Child, Preschool","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007223","descriptor_name":"Infant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009177","descriptor_name":"Mycoplasma pneumoniae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D009177","descriptor_name":"Mycoplasma pneumoniae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011019","descriptor_name":"Pneumonia, Mycoplasma","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064351","descriptor_name":"Genes, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/gigascience/giz093","doi":"https://doi.org/10.1093/gigascience/giz093","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gigascience/giz093","pdf_url":"https://academic.oup.com/gigascience/article-pdf/8/8/giz093/29025748/giz093.pdf","source":{"id":"https://openalex.org/S2735135405","display_name":"GigaScience","issn_l":"2047-217X","issn":["2047-217X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"GigaScience","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:5627775","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6669060","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmid:31367746","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31367746","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"GigaScience","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6669060","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC6669060/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Gigascience","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/d98c8cec-969d-4f53-b03b-080978b278b9","doi":null,"is_oa":true,"landing_page_url":"https://scholars.cityu.edu.hk/en/publications/d98c8cec-969d-4f53-b03b-080978b278b9","pdf_url":null,"source":{"id":"https://openalex.org/S7407055387","display_name":"CityU Scholars","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Dai, W, Wang, H, Zhou, Q, Li, D, Feng, X, Yang, Z, Wang, W, Qiu, C, Lu, Z, Xu, X, Lyu, M, Xie, G, Li, Y, Bao, Y, Liu, Y, Shen, K, Yao, K, Feng, X, Yang, Y, Zhou, K, Li, S & Zheng, Y 2019, 'An integrated respiratory microbial gene catalogue to better understand the microbial aetiology of Mycoplasma pneumoniae pneumonia', GigaScience, vol. 8, no. 8, giz093. https://doi.org/10.1093/gigascience/giz093","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/gigascience/giz093","doi":"https://doi.org/10.1093/gigascience/giz093","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gigascience/giz093","pdf_url":"https://academic.oup.com/gigascience/article-pdf/8/8/giz093/29025748/giz093.pdf","source":{"id":"https://openalex.org/S2735135405","display_name":"GigaScience","issn_l":"2047-217X","issn":["2047-217X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"GigaScience","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.98580002784729,"id":"https://metadata.un.org/sdg/3"}],"study_designs":[{"display_name":"Observational Study","id":"https://openalex.org/study-designs/observational-study"}],"awards":[{"id":"https://openalex.org/G4610257391","display_name":null,"funder_award_id":"SZSM201512030","funder_id":"https://openalex.org/F4320335767","funder_display_name":"Sanming Project of Medicine in Shenzhen"},{"id":"https://openalex.org/G6675936527","display_name":null,"funder_award_id":"JCYJ20170303155012371","funder_id":"https://openalex.org/F4320335767","funder_display_name":"Sanming Project of Medicine in Shenzhen"}],"funders":[{"id":"https://openalex.org/F4320324095","display_name":"Chinese Medical Association","ror":"https://ror.org/044fynn32"},{"id":"https://openalex.org/F4320335767","display_name":"Sanming Project of Medicine in Shenzhen","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2966470689.pdf","grobid_xml":"https://content.openalex.org/works/W2966470689.grobid-xml"},"referenced_works_count":75,"referenced_works":["https://openalex.org/W1588999779","https://openalex.org/W1769504474","https://openalex.org/W1803443273","https://openalex.org/W1998405590","https://openalex.org/W2001561488","https://openalex.org/W2003977878","https://openalex.org/W2007439698","https://openalex.org/W2010558602","https://openalex.org/W2021181933","https://openalex.org/W2022030111","https://openalex.org/W2023689593","https://openalex.org/W2028017608","https://openalex.org/W2029869659","https://openalex.org/W2041457600","https://openalex.org/W2048673910","https://openalex.org/W2062435090","https://openalex.org/W2065880938","https://openalex.org/W2071841602","https://openalex.org/W2073578515","https://openalex.org/W2074840046","https://openalex.org/W2080554049","https://openalex.org/W2083862479","https://openalex.org/W2097124003","https://openalex.org/W2104399201","https://openalex.org/W2105199251","https://openalex.org/W2106197985","https://openalex.org/W2115084050","https://openalex.org/W2116581803","https://openalex.org/W2124166542","https://openalex.org/W2125826054","https://openalex.org/W2129933858","https://openalex.org/W2141980700","https://openalex.org/W2142898494","https://openalex.org/W2147634646","https://openalex.org/W2150069228","https://openalex.org/W2150258411","https://openalex.org/W2156125289","https://openalex.org/W2159675211","https://openalex.org/W2160969485","https://openalex.org/W2164063072","https://openalex.org/W2167552783","https://openalex.org/W2168748486","https://openalex.org/W2173913502","https://openalex.org/W2326340858","https://openalex.org/W2343030398","https://openalex.org/W2346069395","https://openalex.org/W2403190663","https://openalex.org/W2470254941","https://openalex.org/W2529454491","https://openalex.org/W2544493586","https://openalex.org/W2559974100","https://openalex.org/W2566587016","https://openalex.org/W2581142702","https://openalex.org/W2601068128","https://openalex.org/W2607289612","https://openalex.org/W2614636468","https://openalex.org/W2710205933","https://openalex.org/W2727392759","https://openalex.org/W2736920791","https://openalex.org/W2745006471","https://openalex.org/W2756958651","https://openalex.org/W2759413496","https://openalex.org/W2766169585","https://openalex.org/W2771296805","https://openalex.org/W2774267806","https://openalex.org/W2787374601","https://openalex.org/W2792021903","https://openalex.org/W2797330238","https://openalex.org/W2804472922","https://openalex.org/W2806674978","https://openalex.org/W2889019390","https://openalex.org/W3145041166","https://openalex.org/W3148781898","https://openalex.org/W4251574851","https://openalex.org/W6681606515"],"related_works":["https://openalex.org/W2988317908","https://openalex.org/W2806674978","https://openalex.org/W4367834026","https://openalex.org/W2771296805","https://openalex.org/W3139043210","https://openalex.org/W7166301022","https://openalex.org/W7054426494","https://openalex.org/W4390964126","https://openalex.org/W4412686006","https://openalex.org/W7165571935"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,49,67,101,197],"imbalanced":[2],"respiratory":[3,37,50,216],"microbiota":[4],"observed":[5],"in":[6,13,73,107,133,151,174,190,212],"pneumonia":[7,85],"causes":[8],"high":[9],"morbidity":[10],"and":[11,44,78,90,113,129,145,157,209],"mortality":[12],"childhood.":[14],"Respiratory":[15],"metagenomic":[16,163],"analysis":[17],"demands":[18],"a":[19,180,191],"comprehensive":[20],"microbial":[21,38,51,60,70,88,207,226],"gene":[22,52,92],"catalogue,":[23],"which":[24,118],"will":[25,202,219],"significantly":[26],"advance":[27],"our":[28],"understanding":[29],"of":[30,64,98,104,124,137,154,199,205,214,228],"host-microorganism":[31,210],"interactions.":[32],"RESULTS:":[33],"We":[34],"collected":[35],"334":[36],"samples":[39],"from":[40],"171":[41],"healthy":[42,74,99],"children":[43,46,75,81,138],"76":[45],"with":[47,82,96,121,139],"pneumonia.":[48,140],"catalogue":[53],"we":[54],"established":[55],"comprised":[56],"2.25":[57],"million":[58],"non-redundant":[59],"genes,":[61],"covering":[62],"90.52%":[63],"prevalent":[65],"genes.":[66],"major":[68],"oropharyngeal":[69,87,105,135],"species":[71],"found":[72],"were":[76,149,171],"Prevotella":[77],"Streptococcus.":[79],"In":[80],"Mycoplasma":[83],"pneumoniae":[84,156,178],"(MPP),":[86],"diversity":[89],"associated":[91,120],"numbers":[93],"decreased":[94],"compared":[95],"those":[97],"children.":[100],"concurrence":[102],"network":[103],"microorganisms":[106,160],"patients":[108],"predominantly":[109],"featured":[110],"Staphylococcus":[111],"spp.":[112],"M.":[114,155,177],"pneumoniae.":[115],"Functional":[116],"orthologues,":[117],"are":[119],"the":[122,134,152,166,175,215,225],"metabolism":[123],"various":[125],"lipids,":[126],"membrane":[127],"transport,":[128],"signal":[130],"transduction,":[131],"accumulated":[132],"microbiome":[136],"Several":[141],"antibiotic":[142],"resistance":[143,169,187],"genes":[144,148,170],"virulence":[146],"factor":[147],"identified":[150,173,189],"genomes":[153],"13":[158],"other":[159],"reconstructed":[161],"via":[162],"data.":[164],"Although":[165],"common":[167],"macrolide/\u03b2-lactam":[168],"not":[172],"assembled":[176],"genome,":[179],"single-nucleotide":[181],"polymorphism":[182],"(A2063G)":[183],"related":[184],"to":[185],"macrolide":[186],"was":[188],"23S":[192],"ribosomal":[193],"RNA":[194],"gene.":[195],"CONCLUSIONS:":[196],"results":[198],"this":[200],"study":[201],"facilitate":[203],"exploration":[204],"unknown":[206],"components":[208],"interactions":[211],"studies":[213],"microbiome.":[217],"They":[218],"also":[220],"yield":[221],"further":[222],"insights":[223],"into":[224],"aetiology":[227],"MPP.":[229]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-11-12T12:28:57.059296","created_date":"2019-08-13T00:00:00"}
