{"id":"https://openalex.org/W2965570643","doi":"https://doi.org/10.1134/s0026261719030172","title":"Diversity of the bphA1 Genes in a Microbial Community from Anthropogenically Contaminated Soil and Isolation of New Pseudomonads Degrading Biphenyl/Chlorinated Biphenyls","display_name":"Diversity of the bphA1 Genes in a Microbial Community from Anthropogenically Contaminated Soil and Isolation of New Pseudomonads Degrading Biphenyl/Chlorinated Biphenyls","publication_year":2019,"publication_date":"2019-07-01","ids":{"openalex":"https://openalex.org/W2965570643","doi":"https://doi.org/10.1134/s0026261719030172","mag":"2965570643"},"language":"en","primary_location":{"id":"doi:10.1134/s0026261719030172","doi":"https://doi.org/10.1134/s0026261719030172","is_oa":false,"landing_page_url":"https://doi.org/10.1134/s0026261719030172","pdf_url":null,"source":{"id":"https://openalex.org/S4210199608","display_name":"Microbiology","issn_l":"0026-2617","issn":["0026-2617","1608-3237","3034-5464"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","jufo-1","norway-1","poland-40","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320267","host_organization_name":"Pleiades Publishing","host_organization_lineage":["https://openalex.org/P4310320267","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Pleiades Publishing","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083045490","display_name":"\u0410. \u041e. \u0412\u043e\u0440\u043e\u043d\u0438\u043d\u0430","orcid":"https://orcid.org/0000-0002-7295-1337","observed_orcids":["https://orcid.org/0000-0002-7295-1337"]},"institutions":[{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I4210119369","display_name":"Ural Branch of the Russian Academy of Sciences","ror":"https://ror.org/02s4h3z39","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210119369"]},{"id":"https://openalex.org/I4210144800","display_name":"Institute of Ecology and Genetics of Microorganisms","ror":"https://ror.org/04e09qg36","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210144800"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"A. O. Voronina","raw_affiliation_strings":["Institute of Ecology and Genetics of Microorganisms, Ural Branch, Russian Academy of Sciences, 614990, Perm, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Ecology and Genetics of Microorganisms, Ural Branch, Russian Academy of Sciences, 614990, Perm, Russia","institution_ids":["https://openalex.org/I1313323035","https://openalex.org/I4210119369","https://openalex.org/I4210144800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036340397","display_name":"\u0415\u0433\u043e\u0440\u043e\u0432\u0430 \u0414\u0430\u0440\u044c\u044f \u041e\u043b\u0435\u0433\u043e\u0432\u043d\u0430","orcid":"https://orcid.org/0000-0001-8018-4687","observed_orcids":["https://orcid.org/0000-0001-8018-4687"]},"institutions":[{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I4210119369","display_name":"Ural Branch of the Russian Academy of Sciences","ror":"https://ror.org/02s4h3z39","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210119369"]},{"id":"https://openalex.org/I4210144800","display_name":"Institute of Ecology and Genetics of Microorganisms","ror":"https://ror.org/04e09qg36","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210144800"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"D. O. Egorova","raw_affiliation_strings":["Institute of Ecology and Genetics of Microorganisms, Ural Branch, Russian Academy of Sciences, 614990, Perm, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Ecology and Genetics of Microorganisms, Ural Branch, Russian Academy of Sciences, 614990, Perm, Russia","institution_ids":["https://openalex.org/I1313323035","https://openalex.org/I4210119369","https://openalex.org/I4210144800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048140210","display_name":"\u0415. \u0421. \u041a\u043e\u0440\u0441\u0430\u043a\u043e\u0432\u0430","orcid":"https://orcid.org/0000-0002-6907-7562","observed_orcids":["https://orcid.org/0000-0002-6907-7562"]},"institutions":[{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I4210119369","display_name":"Ural Branch of the Russian Academy of Sciences","ror":"https://ror.org/02s4h3z39","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210119369"]},{"id":"https://openalex.org/I4210144800","display_name":"Institute of Ecology and Genetics of Microorganisms","ror":"https://ror.org/04e09qg36","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210144800"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"E. S. Korsakova","raw_affiliation_strings":["Institute of Ecology and Genetics of Microorganisms, Ural Branch, Russian Academy of Sciences, 614990, Perm, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Ecology and Genetics of Microorganisms, Ural Branch, Russian Academy of Sciences, 614990, Perm, Russia","institution_ids":["https://openalex.org/I1313323035","https://openalex.org/I4210119369","https://openalex.org/I4210144800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053638119","display_name":"\u0415. \u0413. \u041f\u043b\u043e\u0442\u043d\u0438\u043a\u043e\u0432\u0430","orcid":"https://orcid.org/0000-0002-0107-0719","observed_orcids":["https://orcid.org/0000-0002-0107-0719"]},"institutions":[{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I4210119369","display_name":"Ural Branch of the Russian Academy of Sciences","ror":"https://ror.org/02s4h3z39","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210119369"]},{"id":"https://openalex.org/I4210144800","display_name":"Institute of Ecology and Genetics of Microorganisms","ror":"https://ror.org/04e09qg36","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210144800"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"E. G. Plotnikova","raw_affiliation_strings":["Institute of Ecology and Genetics of Microorganisms, Ural Branch, Russian Academy of Sciences, 614990, Perm, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Ecology and Genetics of Microorganisms, Ural Branch, Russian Academy of Sciences, 614990, Perm, Russia","institution_ids":["https://openalex.org/I1313323035","https://openalex.org/I4210119369","https://openalex.org/I4210144800"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5053638119"],"corresponding_institution_ids":["https://openalex.org/I1313323035","https://openalex.org/I4210119369","https://openalex.org/I4210144800"],"apc_list":null,"apc_paid":null,"fwci":0.3799,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.55796797,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":96},"biblio":{"volume":"88","issue":"4","first_page":"433","last_page":"443"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10324","display_name":"Microbial bioremediation and biosurfactants","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2310","display_name":"Pollution"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10324","display_name":"Microbial bioremediation and biosurfactants","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2310","display_name":"Pollution"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13736","display_name":"Steroid Chemistry and Biochemistry","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11136","display_name":"Enzyme-mediated dye degradation","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2402","display_name":"Applied Microbiology and Biotechnology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biphenyl-degradation","display_name":"biphenyl degradation","score":0.7770000100135803},{"id":"https://openalex.org/keywords/polychlorinated-biphenyls","display_name":"polychlorinated biphenyls","score":0.949999988079071},{"id":"https://openalex.org/keywords/pseudomonas","display_name":"Pseudomonas","score":0.8209999799728394},{"id":"https://openalex.org/keywords/pseudomonas-taiwanensis","display_name":"Pseudomonas taiwanensis","score":0.8009999990463257},{"id":"https://openalex.org/keywords/pseudomonas-alcaligenes","display_name":"Pseudomonas alcaligenes","score":0.9959999918937683},{"id":"https://openalex.org/keywords/chlorinated-aromatic-compounds","display_name":"chlorinated aromatic compounds","score":0.5809999704360962},{"id":"https://openalex.org/keywords/contaminated-soil","display_name":"contaminated soil","score":0.6930000185966492},{"id":"https://openalex.org/keywords/bioremediation","display_name":"bioremediation","score":0.8259999752044678},{"id":"https://openalex.org/keywords/microbial-community-diversity","display_name":"microbial community diversity","score":0.5440000295639038}],"concepts":[{"id":"https://openalex.org/C2775941552","wikidata":"https://www.wikidata.org/wiki/Q25212305","display_name":"Isolation (microbiology)","level":2,"score":0.7639449834823608},{"id":"https://openalex.org/C2780591471","wikidata":"https://www.wikidata.org/wiki/Q410915","display_name":"Biphenyl","level":2,"score":0.7186425924301147},{"id":"https://openalex.org/C2124996","wikidata":"https://www.wikidata.org/wiki/Q816441","display_name":"Bioremediation","level":3,"score":0.5292103886604309},{"id":"https://openalex.org/C107872376","wikidata":"https://www.wikidata.org/wiki/Q321355","display_name":"Environmental chemistry","level":1,"score":0.46188443899154663},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45864373445510864},{"id":"https://openalex.org/C112570922","wikidata":"https://www.wikidata.org/wiki/Q60528603","display_name":"Contamination","level":2,"score":0.4566033184528351},{"id":"https://openalex.org/C2781463711","wikidata":"https://www.wikidata.org/wiki/Q131143","display_name":"Pseudomonas","level":3,"score":0.4298696517944336},{"id":"https://openalex.org/C65580899","wikidata":"https://www.wikidata.org/wiki/Q212734","display_name":"Soil contamination","level":3,"score":0.41103029251098633},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.3233254551887512},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.3131360411643982},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.28130555152893066},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.26545944809913635},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07655757665634155},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.05565163493156433}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1134/s0026261719030172","doi":"https://doi.org/10.1134/s0026261719030172","is_oa":false,"landing_page_url":"https://doi.org/10.1134/s0026261719030172","pdf_url":null,"source":{"id":"https://openalex.org/S4210199608","display_name":"Microbiology","issn_l":"0026-2617","issn":["0026-2617","1608-3237","3034-5464"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","jufo-1","norway-1","poland-40","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320267","host_organization_name":"Pleiades Publishing","host_organization_lineage":["https://openalex.org/P4310320267","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Pleiades Publishing","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/6","display_name":"Clean water and sanitation","score":0.53329998254776}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W124932162","https://openalex.org/W1187626354","https://openalex.org/W1491053390","https://openalex.org/W1537423632","https://openalex.org/W1569833668","https://openalex.org/W1821758722","https://openalex.org/W1965840820","https://openalex.org/W1967018889","https://openalex.org/W1969392928","https://openalex.org/W1987056595","https://openalex.org/W1997042153","https://openalex.org/W2042990962","https://openalex.org/W2058554769","https://openalex.org/W2058624522","https://openalex.org/W2082604431","https://openalex.org/W2083172909","https://openalex.org/W2085227264","https://openalex.org/W2100482675","https://openalex.org/W2108914075","https://openalex.org/W2116708135","https://openalex.org/W2133308090","https://openalex.org/W2138819983","https://openalex.org/W2142061577","https://openalex.org/W2145465690","https://openalex.org/W2154086974","https://openalex.org/W2287553938","https://openalex.org/W2290125927","https://openalex.org/W2330583201","https://openalex.org/W2408448482","https://openalex.org/W2608351237","https://openalex.org/W2612566120","https://openalex.org/W2628865644","https://openalex.org/W2793098806","https://openalex.org/W2795117344","https://openalex.org/W4236405639"],"related_works":["https://openalex.org/W2385584654","https://openalex.org/W2168049923","https://openalex.org/W95560602","https://openalex.org/W2023320288","https://openalex.org/W7134717255","https://openalex.org/W2162718103","https://openalex.org/W7125402342","https://openalex.org/W4236405639","https://openalex.org/W4390272071","https://openalex.org/W4243293547"],"abstract_inverted_index":{"Abstract\u2014":[0],"Molecular":[1],"biological":[2],"and":[3,41,64,123,145,158,179,182,190,211],"cultivation-based":[4],"approaches":[5],"were":[6,47,118],"used":[7],"to":[8,67,89,126,137,163],"investigate":[9],"the":[10,26,29,33,51,56,65,68,78,85,90,93,134,138,152,161,166,188,194],"microbial":[11],"community":[12],"of":[13,25,35,45,50,77,80,96,111,141,151,155,165,193,202,206,213],"tehnogenic":[14],"soil":[15,60,113],"contaminated":[16],"with":[17,84,116],"poorly":[18],"degradable":[19],"toxic":[20],"(chlorinated)":[21],"aromatic":[22,81],"compounds.":[23],"Diversity":[24],"bphA1":[27,153],"genes,":[28],"key":[30],"genes":[31,79,91],"for":[32,204],"degradation":[34],"biphenyl/polychlorinated":[36],"biphenyls":[37,181],"(PCB)":[38],"was":[39],"assessed,":[40],"new":[42],"bacterial":[43],"degraders":[44],"biphemyl/PCB":[46],"isolated.":[48],"Cloning":[49],"PCR":[52],"product":[53],"obtained":[54,106],"using":[55],"DNA":[57],"isolated":[58],"from":[59,100,107],"as":[61,120],"a":[62,112],"template":[63],"primers":[66],"biphenyl":[69,117,185,195],"2,3-dioxygenase":[70],"\u03b1-subunit":[71],"gene":[72,130],"(bphA1)":[73,99],"revealed":[74,160],"two":[75],"types":[76],"dioxygenases":[82],"(DO)":[83],"highest":[86,135],"similarity":[87,136,162],"(97.8\u201299.5%)":[88],"encoding":[92],"Rieske":[94],"cluster":[95],"DO":[97],"\u03b1-subunits":[98],"uncultured":[101],"bacteria.":[102],"Two":[103],"biphenyl-degrading":[104,168],"isolates":[105],"an":[108],"enrichment":[109],"culture":[110],"sample":[114],"incubated":[115],"identified":[119],"Pseudomonas":[121],"(VRP2-6":[122],"VRP2-2).":[124],"According":[125],"their":[127],"16S":[128],"rRNA":[129],"sequences,":[131],"they":[132],"exhibited":[133],"type":[139],"strain":[140],"P.":[142,146],"taiwanensis":[143],"(99%)":[144],"alcaligenes":[147],"(100%),":[148],"respectively.":[149],"Analysis":[150],"sequences":[154],"strains":[156,199],"VRP2-6":[157,175],"VRP2-2":[159],"those":[164],"known":[167],"pseudomonads":[169],"not":[170],"exceeding":[171],"97.3%.":[172],"The":[173],"isolate":[174],"efficiently":[176],"utilized":[177],"ortho-":[178,189],"para-monochlorinated":[180],"degraded":[183],"dichlorinated":[184],"oxidizing":[186],"both":[187],"para-chlorinated":[191],"rings":[192],"molecule.":[196],"New":[197],"pseudomonad":[198],"may":[200],"be":[201],"interest":[203],"development":[205],"biotechnologies":[207],"aimed":[208],"at":[209],"monitoring":[210],"remediation":[212],"biphenyl/PCB-contaminated":[214],"soils.":[215]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-11-06T12:05:46.655746","created_date":"2019-08-13T00:00:00"}
