{"id":"https://openalex.org/W2963010472","doi":"https://doi.org/10.1111/pbi.13215","title":"Towards a deeper haplotype mining of complex traits in rice with RFGB v2.0","display_name":"Towards a deeper haplotype mining of complex traits in rice with RFGB v2.0","publication_year":2019,"publication_date":"2019-07-23","ids":{"openalex":"https://openalex.org/W2963010472","doi":"https://doi.org/10.1111/pbi.13215","mag":"2963010472","pmid":"https://pubmed.ncbi.nlm.nih.gov/31336017","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/6920129"},"language":"en","primary_location":{"id":"doi:10.1111/pbi.13215","doi":"https://doi.org/10.1111/pbi.13215","is_oa":true,"landing_page_url":"https://doi.org/10.1111/pbi.13215","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/pbi.13215","source":{"id":"https://openalex.org/S36510773","display_name":"Plant Biotechnology Journal","issn_l":"1467-7644","issn":["1467-7644","1467-7652"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-b","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Biotechnology Journal","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/pbi.13215","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084905623","display_name":"Chunchao Wang","orcid":"https://orcid.org/0009-0005-3987-1078","observed_orcids":["https://orcid.org/0009-0005-3987-1078"]},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210158190","display_name":"Institute of Crop Sciences","ror":"https://ror.org/051abs833","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210158190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chun\u2010Chao Wang","raw_affiliation_strings":["Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210158190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034667645","display_name":"Hong Jun Yu","orcid":"https://orcid.org/0000-0002-1748-8693","observed_orcids":["https://orcid.org/0000-0002-1748-8693"]},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112230","display_name":"State Key Laboratory of Plant Genomics","ror":"https://ror.org/0205xz563","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210112230"]},{"id":"https://openalex.org/I4210124606","display_name":"Institute of Genetics and Developmental Biology","ror":"https://ror.org/02aee5m12","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210124606"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hong Yu","raw_affiliation_strings":["State Key Laboratory of Plant Genomics and National Center for Plant Gene Research (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0002-1748-8693","affiliations":[{"raw_affiliation_string":"State Key Laboratory of Plant Genomics and National Center for Plant Gene Research (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210112230","https://openalex.org/I4210124606"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068129873","display_name":"Ji Huang","orcid":"https://orcid.org/0000-0002-9057-4299","observed_orcids":["https://orcid.org/0000-0002-9057-4299"]},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ji Huang","raw_affiliation_strings":["National Key Lab of Crop Genetics and Germplasm Enhancement, College of Agriculture, Nanjing Agricultural University, Nanjing, China"],"raw_orcid":"https://orcid.org/0000-0002-9057-4299","affiliations":[{"raw_affiliation_string":"National Key Lab of Crop Genetics and Germplasm Enhancement, College of Agriculture, Nanjing Agricultural University, Nanjing, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115694788","display_name":"Wensheng Wang","orcid":"https://orcid.org/0009-0009-7561-2494","observed_orcids":["https://orcid.org/0009-0009-7561-2494"]},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210158190","display_name":"Institute of Crop Sciences","ror":"https://ror.org/051abs833","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210158190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wen\u2010Sheng Wang","raw_affiliation_strings":["Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210158190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108122317","display_name":"Muhiuddin Faruquee","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210158190","display_name":"Institute of Crop Sciences","ror":"https://ror.org/051abs833","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210158190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Muhiuddin Faruquee","raw_affiliation_strings":["Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210158190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081225705","display_name":"Fan Zhang","orcid":"https://orcid.org/0000-0003-0305-8761","observed_orcids":["https://orcid.org/0000-0003-0305-8761"]},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210158190","display_name":"Institute of Crop Sciences","ror":"https://ror.org/051abs833","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210158190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fan Zhang","raw_affiliation_strings":["Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210158190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103056879","display_name":"Xiuqin Zhao","orcid":"https://orcid.org/0000-0003-0331-6492","observed_orcids":["https://orcid.org/0000-0003-0331-6492"]},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210158190","display_name":"Institute of Crop Sciences","ror":"https://ror.org/051abs833","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210158190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiu\u2010Qin Zhao","raw_affiliation_strings":["Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210158190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062603887","display_name":"Binying Fu","orcid":"https://orcid.org/0000-0001-9931-0487","observed_orcids":["https://orcid.org/0000-0001-9931-0487"]},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210158190","display_name":"Institute of Crop Sciences","ror":"https://ror.org/051abs833","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210158190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin\u2010Ying Fu","raw_affiliation_strings":["Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210158190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100437991","display_name":"Kai Chen","orcid":"https://orcid.org/0000-0002-9943-0806","observed_orcids":["https://orcid.org/0000-0002-9943-0806"]},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Chen","raw_affiliation_strings":["Shenzhen Institute of Breeding for Innovation, Chinese Academy of Agricultural Sciences, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Institute of Breeding for Innovation, Chinese Academy of Agricultural Sciences, Shenzhen, China","institution_ids":["https://openalex.org/I4210138501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108046749","display_name":"Hongliang Zhang","orcid":"https://orcid.org/0000-0001-9205-5559","observed_orcids":["https://orcid.org/0000-0001-9205-5559","https://orcid.org/0000-0002-4184-896X"]},"institutions":[{"id":"https://openalex.org/I52158045","display_name":"China Agricultural University","ror":"https://ror.org/04v3ywz14","country_code":"CN","type":"education","lineage":["https://openalex.org/I52158045"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hong\u2010Liang Zhang","raw_affiliation_strings":["Beijing Key Laboratory of Crop Genetic Improvement / College of Agronomy and Biotechnology, China Agricultural University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Key Laboratory of Crop Genetic Improvement / College of Agronomy and Biotechnology, China Agricultural University, Beijing, China","institution_ids":["https://openalex.org/I52158045"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045946121","display_name":"Shuaishuai Tai","orcid":"https://orcid.org/0000-0001-8204-6982","observed_orcids":["https://orcid.org/0000-0001-8204-6982","https://orcid.org/0000-0001-5241-1782"]},"institutions":[{"id":"https://openalex.org/I4387152444","display_name":"BGI Genomics","ror":"https://ror.org/0155ctq43","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387152444"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuai\u2010Shuai Tai","raw_affiliation_strings":["BGI Genomics, BGI-Shenzhen, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Genomics, BGI-Shenzhen, Shenzhen, China","institution_ids":["https://openalex.org/I4387152444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010368404","display_name":"Chaochun Wei","orcid":"https://orcid.org/0000-0002-1031-034X","observed_orcids":["https://orcid.org/0000-0002-1031-034X"]},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chaochun Wei","raw_affiliation_strings":["Department of Bioinformatics and Biostatistics, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Biostatistics, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Kenneth L. McNally","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Kenneth L. McNally","raw_affiliation_strings":["International Rice Research Institute, Metro Manila, The Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Rice Research Institute, Metro Manila, The Philippines","institution_ids":["https://openalex.org/I162210093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103076451","display_name":"Nickolai N. Alexandrov","orcid":"https://orcid.org/0000-0002-5419-2197","observed_orcids":["https://orcid.org/0000-0002-5419-2197"]},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Nickolai Alexandrov","raw_affiliation_strings":["International Rice Research Institute, Metro Manila, The Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Rice Research Institute, Metro Manila, The Philippines","institution_ids":["https://openalex.org/I162210093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013644411","display_name":"Xiuying Gao","orcid":"https://orcid.org/0000-0001-8468-3846","observed_orcids":["https://orcid.org/0000-0001-8468-3846"]},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiu\u2010Ying Gao","raw_affiliation_strings":["National Key Lab of Crop Genetics and Germplasm Enhancement, College of Agriculture, Nanjing Agricultural University, Nanjing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Key Lab of Crop Genetics and Germplasm Enhancement, College of Agriculture, Nanjing Agricultural University, Nanjing, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100769533","display_name":"Jiayang Li","orcid":"https://orcid.org/0000-0002-0487-6574","observed_orcids":["https://orcid.org/0000-0002-0487-6574","https://orcid.org/0000-0001-9245-0209","https://orcid.org/0009-0005-5930-3457"]},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112230","display_name":"State Key Laboratory of Plant Genomics","ror":"https://ror.org/0205xz563","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210112230"]},{"id":"https://openalex.org/I4210124606","display_name":"Institute of Genetics and Developmental Biology","ror":"https://ror.org/02aee5m12","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210124606"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiayang Li","raw_affiliation_strings":["State Key Laboratory of Plant Genomics and National Center for Plant Gene Research (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China","University of Chinese Academy of Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Plant Genomics and National Center for Plant Gene Research (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210112230","https://openalex.org/I4210124606"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101696407","display_name":"Zhikang Li","orcid":"https://orcid.org/0000-0001-8116-2981","observed_orcids":["https://orcid.org/0000-0001-8116-2981"]},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210158190","display_name":"Institute of Crop Sciences","ror":"https://ror.org/051abs833","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210158190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhi\u2010Kang Li","raw_affiliation_strings":["Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China","Shenzhen Institute of Breeding for Innovation, Chinese Academy of Agricultural Sciences, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210158190"]},{"raw_affiliation_string":"Shenzhen Institute of Breeding for Innovation, Chinese Academy of Agricultural Sciences, Shenzhen, China","institution_ids":["https://openalex.org/I4210138501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021169111","display_name":"Jianlong Xu","orcid":"https://orcid.org/0000-0001-6623-1256","observed_orcids":["https://orcid.org/0000-0001-6623-1256"]},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210158190","display_name":"Institute of Crop Sciences","ror":"https://ror.org/051abs833","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210158190"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jian\u2010Long Xu","raw_affiliation_strings":["Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China","Shenzhen Institute of Breeding for Innovation, Chinese Academy of Agricultural Sciences, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210158190"]},{"raw_affiliation_string":"Shenzhen Institute of Breeding for Innovation, Chinese Academy of Agricultural Sciences, Shenzhen, China","institution_ids":["https://openalex.org/I4210138501"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004580158","display_name":"Tianqing Zheng","orcid":"https://orcid.org/0000-0002-6313-3068","observed_orcids":["https://orcid.org/0000-0002-6313-3068","https://orcid.org/0009-0002-9455-222X"]},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210158190","display_name":"Institute of Crop Sciences","ror":"https://ror.org/051abs833","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210158190"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tian\u2010Qing Zheng","raw_affiliation_strings":["Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0002-6313-3068","affiliations":[{"raw_affiliation_string":"Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210158190"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5004580158","https://openalex.org/A5021169111"],"corresponding_institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210158190"],"apc_list":{"value":2800,"currency":"USD","value_usd":2800},"apc_paid":{"value":981,"currency":"EUR","value_usd":1058},"fwci":7.8497,"has_fulltext":true,"cited_by_count":148,"citation_normalized_percentile":{"value":0.98400385,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":100},"biblio":{"volume":"18","issue":"1","first_page":"14","last_page":"16"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.002899999963119626,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12045","display_name":"Rice Cultivation and Yield Improvement","score":0.002300000051036477,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rice","display_name":"rice","score":0.5830000042915344},{"id":"https://openalex.org/keywords/complex-traits","display_name":"complex traits","score":0.8050000071525574},{"id":"https://openalex.org/keywords/web-services","display_name":"web services","score":0.5329999923706055},{"id":"https://openalex.org/keywords/nonsynonymous-snps","display_name":"non-synonymous SNPs","score":0.8500000238418579},{"id":"https://openalex.org/keywords/allele-frequency","display_name":"allele frequency","score":0.47200000286102295},{"id":"https://openalex.org/keywords/rice-breeding","display_name":"rice breeding","score":0.4300000071525574}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7866157293319702},{"id":"https://openalex.org/C119054055","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"Indel","level":5,"score":0.7589384913444519},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.6414183974266052},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6150379180908203},{"id":"https://openalex.org/C2777461220","wikidata":"https://www.wikidata.org/wiki/Q589029","display_name":"Germplasm","level":2,"score":0.6125745177268982},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5638395547866821},{"id":"https://openalex.org/C2778543611","wikidata":"https://www.wikidata.org/wiki/Q161426","display_name":"Oryza sativa","level":3,"score":0.49683621525764465},{"id":"https://openalex.org/C2910714999","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"INDEL Mutation","level":5,"score":0.48470354080200195},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.4799237847328186},{"id":"https://openalex.org/C130073038","wikidata":"https://www.wikidata.org/wiki/Q1211967","display_name":"Phenotypic trait","level":4,"score":0.4357418417930603},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.40102100372314453},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.38488078117370605},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3476448059082031},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.30689573287963867},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.27950939536094666},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.2758311629295349},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16282010078430176},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020412","descriptor_name":"Multifactorial Inheritance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1111/pbi.13215","doi":"https://doi.org/10.1111/pbi.13215","is_oa":true,"landing_page_url":"https://doi.org/10.1111/pbi.13215","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/pbi.13215","source":{"id":"https://openalex.org/S36510773","display_name":"Plant Biotechnology Journal","issn_l":"1467-7644","issn":["1467-7644","1467-7652"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-b","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Biotechnology Journal","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:5882924","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6920129","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmid:31336017","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31336017","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant biotechnology journal","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6920129","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC6920129/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Biotechnol J","raw_type":"Text"},{"id":"pmh:oai:cgspace.cgiar.org:10568/164642","doi":null,"is_oa":true,"landing_page_url":"https://hdl.handle.net/10568/164642","pdf_url":null,"source":{"id":"https://openalex.org/S4306402055","display_name":"CGSPace A Repository of Agricultural Research Outputs (Consultative Group for International Agricultural Research)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1286583668","host_organization_name":"CGIAR","host_organization_lineage":["https://openalex.org/I1286583668"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Wang, Chun\u2010Chao, Yu, Hong, Huang, Ji, Wang, Wen\u2010Sheng, Faruquee, Muhiuddin, Zhang, Fan, Zhao, Xiu\u2010Qin, Fu, Bin\u2010Ying, Chen, Kai, Zhang, Hong\u2010Liang, Tai, Shuai\u2010Shuai, Wei, Chaochun, McNally, K.L., Alexandrov, N., Gao, Xiu\u2010Ying, Li, Jiayang, Li, Zhi\u2010Kang, Xu, Jian\u2010Long and Zheng, Tian\u2010Qing. 2020. Towards a deeper haplotype mining of complex traits in rice with RFGB v2.0. Plant Biotechnology Journal, Volume 18 no. 1 p. 14-16","raw_type":"Journal Article"},{"id":"doi:10.60692/th14n-0we36","doi":"https://doi.org/10.60692/th14n-0we36","is_oa":true,"landing_page_url":"https://doi.org/10.60692/th14n-0we36","pdf_url":null,"source":{"id":"https://openalex.org/S7407051682","display_name":"Greater South Information System","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.60692/z2g0h-x3637","doi":"https://doi.org/10.60692/z2g0h-x3637","is_oa":true,"landing_page_url":"https://doi.org/10.60692/z2g0h-x3637","pdf_url":null,"source":{"id":"https://openalex.org/S7407051682","display_name":"Greater South Information System","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1111/pbi.13215","doi":"https://doi.org/10.1111/pbi.13215","is_oa":true,"landing_page_url":"https://doi.org/10.1111/pbi.13215","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/pbi.13215","source":{"id":"https://openalex.org/S36510773","display_name":"Plant Biotechnology Journal","issn_l":"1467-7644","issn":["1467-7644","1467-7652"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-b","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Biotechnology Journal","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.9208999872207642,"display_name":"Zero hunger"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1301728424","display_name":null,"funder_award_id":"XTCX2016009","funder_id":"https://openalex.org/F4320323155","funder_display_name":"Chinese Academy of Agricultural Sciences"},{"id":"https://openalex.org/G2028700718","display_name":null,"funder_award_id":"CAAS-ZDXT2018001","funder_id":"https://openalex.org/F4320335848","funder_display_name":"Agricultural Science and Technology Innovation Program"},{"id":"https://openalex.org/G2803750917","display_name":null,"funder_award_id":"31871715","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2909841314","display_name":null,"funder_award_id":"20130415095710361","funder_id":"https://openalex.org/F4320335790","funder_display_name":"Shenzhen Peacock Plan"},{"id":"https://openalex.org/G3032356174","display_name":null,"funder_award_id":"Y201900029","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G3103455026","display_name":null,"funder_award_id":"OPP1130530","funder_id":"https://openalex.org/F4320306137","funder_display_name":"Bill and Melinda Gates Foundation"},{"id":"https://openalex.org/G4631356355","display_name":null,"funder_award_id":"CAAS\u2010XTCX2016009","funder_id":"https://openalex.org/F4320323155","funder_display_name":"Chinese Academy of Agricultural Sciences"},{"id":"https://openalex.org/G4824201474","display_name":null,"funder_award_id":"CAAS-ZDXT2018001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5870503099","display_name":null,"funder_award_id":"OPP1130530","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8586804310","display_name":null,"funder_award_id":"CAAS-ZDXT2018001","funder_id":"https://openalex.org/F4320323155","funder_display_name":"Chinese Academy of Agricultural Sciences"},{"id":"https://openalex.org/G8809318846","display_name":null,"funder_award_id":"2016YFD0101801","funder_id":"https://openalex.org/F4320323155","funder_display_name":"Chinese Academy of Agricultural Sciences"}],"funders":[{"id":"https://openalex.org/F4320306137","display_name":"Bill and Melinda Gates Foundation","ror":"https://ror.org/0456r8d26"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323155","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750"},{"id":"https://openalex.org/F4320329854","display_name":"Jiangsu Collaborative Innovation Center for Modern Crop Production","ror":"https://ror.org/02wwsr002"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null},{"id":"https://openalex.org/F4320335790","display_name":"Shenzhen Peacock Plan","ror":null},{"id":"https://openalex.org/F4320335848","display_name":"Agricultural Science and Technology Innovation Program","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2963010472.pdf","grobid_xml":"https://content.openalex.org/works/W2963010472.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1580492967","https://openalex.org/W2043116503","https://openalex.org/W2130774313","https://openalex.org/W2303542186","https://openalex.org/W2581212852","https://openalex.org/W2765284763","https://openalex.org/W2796877733","https://openalex.org/W2800434159"],"related_works":["https://openalex.org/W2560165052","https://openalex.org/W1580492967","https://openalex.org/W2128676219","https://openalex.org/W2130774313","https://openalex.org/W2004462963","https://openalex.org/W6892621200","https://openalex.org/W2980744026","https://openalex.org/W2043116503","https://openalex.org/W7213332334","https://openalex.org/W3134008084"],"abstract_inverted_index":{"Rice":[0,111,1175,1191],"(Oryza":[1],"sativa":[2],"L.)":[3],"not":[4],"only":[5,1149],"provides":[6],"insurance":[7],"covering":[8],"global":[9],"food":[10],"security":[11],"but":[12],"also":[13,246,854],"works":[14],"as":[15,405,478,832],"a":[16,210,256,406,485,515,527,563,692,748,754,778,866,883,932,947,965,1021,1040,1065,1163],"model":[17],"for":[18,31,97,119,188,484,500,517,544,554,575,606,694,708,737,793,801,836,868,886,924,946,1043,1118,1156,1174,1230,1241,1263],"plant":[19,770],"research.":[20],"Currently,":[21,197],"with":[22,215,263,319,378,402,433,471,521,536,631,679,698,726,804,871,889,903,938,940,1000,1083],"overwhelmingly":[23],"accumulated":[24],"sequencing":[25],"data,":[26],"various":[27],"databases":[28],"were":[29,191,233,350,443,603,610,623,673,853,985],"constructed":[30],"different":[32,428,615,1048],"target":[33,546,590,738,884,901,933],"users,":[34],"including":[35,175],"the":[36,133,194,208,223,228,249,274,279,311,315,327,414,421,431,434,440,482,501,507,545,555,572,582,589,596,632,652,659,670,684,709,712,774,809,825,857,863,875,893,900,904,912,916,920,955,960,990,993,1001,1025,1044,1051,1096,1113,1150,1166,1178,1186,1196,1204,1214,1226,1231,1236,1257,1276,1280],"Genome":[37],"Variation":[38],"Map":[39],"(Song":[40],"et":[41,46,52,57,123,291,399],"al.,":[42,47,53,58,124,292,400],"2018),":[43],"RiceVarMap":[44],"(Zhao":[45],"2015),":[48,54],"SNP-Seek":[49],"database":[50],"(Alexandrov":[51],"RPAN":[55],"(Sun":[56],"2017)":[59],"and":[60,66,89,113,149,182,242,331,365,369,455,557,579,600,729,769,828,909,1033,1053,1193,1198,1203,1207,1235,1259,1273,1278,1283,1298,1310,1317,1322],"MBK":[61],"V1":[62],"(Institute":[63],"of":[64,73,81,87,92,100,110,153,199,212,237,255,278,314,322,391,430,439,565,588,620,655,716,734,817,846,968,982,1036,1050,1068,1080,1165,1183,1190],"Genetics":[65,1192],"Developmental":[67],"Biology,":[68],"C.A.S.,":[69],"2018).":[70,293],"However,":[71],"none":[72],"them":[74],"is":[75,103,164,220,259,1104,1125],"designed":[76,158],"to":[77,143,286,300,413,445,561,612,675,822,862,989,997,1063,1095,1111,1129,1140,1144,1286,1290,1296,1313,1320],"meet":[78],"increasing":[79],"demands":[80],"correlation":[82],"mining":[83,99,362,695,870,967,1079],"between":[84,147,427,593,1027],"huge":[85,145],"sets":[86,152,1031],"phenotypic":[88,148,186,218,1138,1299],"genotypic":[90,150,1034],"data":[91,131,151,187,198,219,296,302,389,412,634,647,806,1030,1128,1139,1152,1292,1300],"re-sequenced":[93],"genome.":[94],"Online":[95],"tool":[96],"deeper":[98,966,1066,1078],"favourable":[101,355,363,696,732,791],"allele/haplotypes":[102],"in":[104,193,227,310,382,394,512,616,637,689,856,959,972,1056,1088],"urgent":[105],"need.":[106],"In":[107,141,222,248,273,595,740,860,928],"2015,":[108],"prototype":[109],"Functional":[112],"Genomic":[114],"Breeding":[115,1173,1194],"(RFGB)":[116],"was":[117,298,524,663,752,936,978,1160],"developed":[118],"breeding":[120,460,479,487,839],"application":[121],"(Zheng":[122],"2015)":[125],"based":[126,585,1013],"on":[127,463,531,586,1014,1024,1077,1170,1267],"SNP":[128,178,250,905,961,1002],"&":[129,179,251,906,962,1003,1221],"InDel":[130,252,907,963,1004],"from":[132,346,468,490,683,711,892,1219],"3000":[134],"rice":[135,782,794,837],"genome":[136,994,998,1085],"(3K-RG)":[137],"project":[138,1218],"(The-3K-rice-genomes-project,":[139],"2014).":[140],"order":[142,1089],"bridge":[144],"gaps":[146],"sequenced":[154,1037,1084],"genome,":[155,1038],"our":[156,287,337,347,387,798,929],"newly":[157],"web":[159,348],"service":[160],"named":[161],"RFGB":[162,169,328,522,638,699,872,1017,1057],"v2.0":[163,170,329,523,700,873,1018],"now":[165,1101],"formally":[166],"online":[167,338],"(http://www.rmbreeding.cn/Index/).":[168],"contains":[171],"five":[172],"major":[173,703],"modules,":[174],"Phenotype,":[176],"Haplotype,":[177],"InDel,":[180],"Germplasm":[181,275,508],"Restore":[183,316,921,980],"Sequence.":[184],"The":[185,235,294,1123,1245],"3K":[189,280],"accession":[190],"embedded":[192,226,636,958,1055],"Phenotype":[195,415],"module.":[196,509,686,811,859,1005],"12":[200],"traits":[201,1082],"are":[202,245,334,451,504,1100,1153],"already":[203],"publicly":[204],"accessible.":[205],"To":[206],"improve":[207,301],"adaptivity,":[209],"function":[211,225],"real-time":[213,1041],"analysis":[214,224,553,630,800,1042],"user":[216,343,417,528,930,1314],"uploaded":[217,807],"provided.":[221],"Haplotype":[229,573,685,810,858],"module,":[230,253,276,416,964],"non-synonym":[231],"SNPs":[232],"considered.":[234],"functions":[236,1054,1099],"allelic":[238],"frequency":[239],"(MAF)":[240],"screening":[241],"sample":[243,407],"definition":[244,715],"available.":[247,1102],"information":[254],"gene":[257,661,756],"query":[258],"accessible":[260,335,505,855],"by":[261,410,526,665,719,743,1162],"searching":[262],"either":[264],"locus":[265],"ID,":[266],"chromosome":[267],"region":[268,885,902],"or":[269],"even":[270],"key":[271],"words.":[272],"grouping":[277],"germplasms":[281,442,710,849,984],"has":[282,641,1019],"been":[283],"updated":[284],"according":[285,988,996],"recent":[288],"report":[289],"(Wang":[290],"germplasm":[295,467,977],"set":[297,390,549,635,1090],"re-organized":[299],"efficiency.":[303],"Additionally,":[304],"we":[305,385,626,746,796],"have":[306,1064,1250],"corrected":[307],"calculation":[308],"errors":[309],"trial":[312],"version":[313],"Sequence":[317,922],"module":[318,574,908,923],"full":[320],"consideration":[321],"InDel.":[323],"More":[324],"details":[325,499],"about":[326],"construction":[330],"utility":[332],"methodologies":[333],"through":[336],"materials":[339],"(http://www.rmbreeding.cn/Index/manual).":[340],"Four":[341],"typical":[342,373],"cases":[344],"picked":[345],"tests":[349],"presented":[351],"here:":[352],"1)":[353,539,705,881],"exploring":[354],"donors,":[356],"2)":[357,548,714,895],"shortlisting":[358,518],"candidate":[359,519,660,717,724,735,833],"genes,":[360],"3)":[361,570,722,910],"haplotypes":[364,697,733,827,835],"4)":[366,580,730],"seeking":[367],"variations":[368,898,918,969,995],"restore":[370,913],"sequences.":[371],"A":[372,618,843],"pre-breeding/forward":[374],"genetics":[375],"work":[376,1008,1159],"begins":[377],"phenotyping.":[379],"As":[380,510,687],"shown":[381,511,688],"Figure":[383,513,690],"1a,":[384],"adopted":[386,831],"published":[388,1151],"zinc":[392],"concentration":[393],"milled":[395],"grains":[396],"(Zn)":[397],"(Zhang":[398],"2018)":[401],"normal":[403],"distribution":[404],"case.":[408],"Interestingly,":[409],"uploading":[411],"found":[418,444,611,674,747,813],"that":[419,814,1248],"Zn,":[420],"custom":[422],"trait":[423,591,706,792,888],"(uploaded":[424],"data),":[425],"varied":[426],"groups":[429,438],"3K-RG":[432,441,848,1114],"box-plot":[435],"viewer.":[436],"Three":[437],"present":[446],"top":[447],"Zn":[448,473],"values,":[449],"which":[450,609,640,672,751,1108,1132],"Geng/japonica":[452,464],"(GJ),":[453],"Aus":[454,491],"Basmati":[456],"(Bas)":[457],"groups.":[458],"For":[459],"schemes":[461],"working":[462,530],"cultivar":[465],"development,":[466],"GJ":[469],"group":[470,494],"higher":[472,787],"values":[474],"would":[475,495,789,1009],"be":[476,496,613,676,790,830,1010],"recommended":[477],"donors.":[480],"On":[481],"contrary,":[483],"Xian/indica":[486],"scheme,":[488],"donors":[489,503],"and/or":[492],"Bas":[493],"favourable.":[497],"Further":[498,1006],"above":[502,864],"using":[506,808,919],"1b,":[514],"route":[516,693,867],"genes":[520,568,668,725,736],"supported":[525,1161],"case":[529],"grain":[532],"length":[533],"(GL)":[534],"dissection":[535],"four":[537,702],"steps:":[538,704],"construct":[540],"near-isogenic":[541],"lines":[542],"(NIL)":[543],"locus;":[547],"up":[550,1091],"multiple":[551,727],"omics":[552],"NIL":[556],"recurrent":[558],"parent":[559],"(RP)":[560],"get":[562],"list":[564,584,662,671,845],"differentially":[566],"expressed":[567],"(DEGs);":[569],"use":[571],"haplotype\u2013phenotype":[576],"association":[577],"analysis;":[578],"shortlist":[581,723],"DEG":[583],"comparisons":[587],"differences":[592],"haplotypes.":[594],"GL":[597,633,646,678],"case,":[598,742,931],"transcriptomic":[599],"phosphoproteomic":[601],"analyses":[602],"carried":[604,627,797,1011],"out":[605,628,1012],"NILqgl3and":[607],"RP,":[608],"significantly":[614],"GL.":[617],"total":[619],"22":[621],"DEGs":[622],"found.":[624],"Then,":[625],"haplotype":[629,799],"v2.0,":[639,1058],"more":[642,821,897,942,973,1075,1116],"than":[643,824,943,974],"2,000":[644],"valid":[645],"points":[648],"at":[649,773,1147],"present.":[650],"With":[651,954,1047,1142],"parameter":[653],"setting":[654],"MAF":[656],"=":[657],"non-filtered,":[658],"shortened":[664],"dropping":[666],"31.8%":[667],"off":[669],"non-related":[677],"intuitive":[680],"supporting":[681],"evidences":[682],"1c,":[691],"includes":[701,874],"evaluation":[707],"3K-RG;":[713],"regions":[718],"GWAS/linkage":[720],"mapping;":[721],"evidences;":[728],"explore":[731],"traits.":[739],"this":[741],"GWAS":[744,939],"mapping,":[745],"loci":[749],"qSV3e,":[750],"harbouring":[753,915,992],"known":[755],"Os03":[757,802,818],"g0856700":[758,803,819],"coding":[759],"Gibberellin":[760],"20":[761],"oxidase":[762],"1":[763],"affecting":[764],"both":[765],"tiller":[766],"number":[767],"(TN)":[768],"height":[771],"(PH)":[772],"seedling":[775],"stage":[776],"under":[777,840],"paddy":[779],"direct":[780],"seeding":[781],"(PDSR)":[783],"system.":[784,842],"Since":[785],"relatively":[786],"TN":[788,805,823],"breeders,":[795],"We":[812],"Hap":[815,851],"7":[816,852],"contributed":[820,1285,1289,1295,1312,1319],"other":[826,1124],"could":[829],"elite":[834,983],"molecular":[838],"PDSR":[841],"donor":[844],"16":[847],"carrying":[850],"addition":[861],"explorations,":[865],"variation":[869],"following":[876],"three":[877],"steps":[878],"(Figure":[879],"1d):":[880],"define":[882],"targeting":[887,917,948,1069],"partial":[890],"accessions":[891,945],"3K-RG,":[894],"access":[896,911,1112],"within":[899,970],"sequences":[914,981],"further":[925],"wet-lab":[926,1007],"confirmation.":[927],"region,":[934],"qRl4-2,":[935],"defined":[937],"no":[941,1251],"1000":[944],"trait,":[949],"leaf":[950],"rolling":[951],"index":[952],"(LRI).":[953],"JBrowse":[956],"engine":[957],"qRl4-2":[971],"2000":[975],"additional":[976],"feasible.":[979],"then":[986],"downloaded":[987],"sub-region":[991],"browsing":[999],"these":[1015],"results.":[1016],"offered":[1020],"unique":[1022],"view":[1023,1067],"relationships":[1026],"two":[1028,1098,1260],"big":[1029],"(phenotypic":[1032],"data)":[1035],"especially":[1039],"phenotype\u2013haplotype":[1045],"associations.":[1046],"combinations":[1049],"modules":[1052],"users":[1059,1110,1134],"may":[1060,1073],"feel":[1061],"free":[1062],"complex":[1070,1081],"trait.":[1071],"This":[1072,1158],"inspire":[1074],"ideas":[1076],"data.":[1086],"Finally,":[1087],"an":[1092],"open":[1093,1155],"platform":[1094],"public,":[1097],"One":[1103],"'Seed":[1105],"request'":[1106],"(http://www.rmbreeding.cn/public/request_germplasm)":[1107],"helps":[1109,1133],"seeds":[1115],"easily":[1117],"their":[1119,1136,1264],"own":[1120,1137],"phenotyping":[1121],"works.":[1122],"'contribute":[1126],"your":[1127],"RFGB'":[1130],"(http://www.rmbreeding.cn/Phenotype/contribute_phenotype)":[1131],"upload":[1135],"RFGB.":[1141],"respect":[1143],"intellectual":[1145],"property,":[1146],"present,":[1148],"fully":[1154],"download.":[1157],"subprogram":[1164],"Key":[1167,1188],"Special":[1168],"Project":[1169],"Molecular":[1171],"Design":[1172],"(2016YFD0101801,":[1176],"2016YFD0100904),":[1177],"National":[1179],"Natural":[1180],"Science":[1181,1206],"Foundation":[1182,1224],"China":[1184],"(31871715),":[1185],"Guangxi":[1187],"Laboratory":[1189],"(2018-05-Z06-KF01),":[1195],"Cooperation":[1197],"Innovation":[1199,1209,1239],"Mission":[1200],"(CAAS-XTCX2016009,":[1201],"CAAS-ZDXT2018001)":[1202],"Agricultural":[1205],"Technology":[1208],"Program,":[1210],"Shenzhen":[1211],"Peacock":[1212],"Plan(20130415095710361),":[1213],"'Green":[1215],"Super":[1216],"Rice'":[1217],"Bill":[1220],"Melinda":[1222],"Gates'":[1223],"(OPP1130530),":[1225],"Fundamental":[1227],"Research":[1228],"Funds":[1229],"Central":[1232],"Universities":[1233],"(Y201900029)":[1234],"Jiangsu":[1237],"Collaborative":[1238],"Center":[1240],"Modern":[1242],"Crop":[1243],"Production.":[1244],"authors":[1246],"declare":[1247],"they":[1249],"competing":[1252],"interests.":[1253],"They":[1254],"greatly":[1255],"appreciate":[1256],"Editors":[1258],"anonymous":[1261],"reviewers":[1262],"valuable":[1265],"comments":[1266],"manuscript":[1268],"improvement.":[1269],"ZKL,":[1270],"JYL,":[1271],"JLX":[1272],"TQZ":[1274],"conceived":[1275],"study":[1277],"draft":[1279],"manuscript.":[1281],"CCW":[1282],"HY":[1284],"coding.":[1287],"JH":[1288],"experimental":[1291],"share.":[1293,1301],"WSW":[1294],"seed":[1297],"MF,":[1302],"ZF,":[1303],"XQZ,":[1304],"BYF,":[1305],"KC,":[1306],"HLZ,":[1307],"KLM,":[1308],"NA":[1309],"XYG":[1311],"cases.":[1315],"SST":[1316],"CW":[1318],"writing":[1321],"revision.":[1323]},"counts_by_year":[{"year":2026,"cited_by_count":15},{"year":2025,"cited_by_count":22},{"year":2024,"cited_by_count":34},{"year":2023,"cited_by_count":26},{"year":2022,"cited_by_count":25},{"year":2021,"cited_by_count":19},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":1}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2019-07-30T00:00:00"}
