{"id":"https://openalex.org/W2955433830","doi":"https://doi.org/10.48550/arxiv.1611.03358","title":"Evaluation of spatial trees for simulation of biological tissue","display_name":"Evaluation of spatial trees for simulation of biological tissue","publication_year":2016,"publication_date":"2016-11-09","ids":{"openalex":"https://openalex.org/W2955433830","doi":"https://doi.org/10.48550/arxiv.1611.03358","mag":"2955433830"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:1611.03358","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/abs/1611.03358","pdf_url":"https://arxiv.org/pdf/1611.03358","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1611.03358","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015774147","display_name":"Ilya Dmitrenok","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210116741","display_name":"Innopolis University","ror":"https://ror.org/02b7jh107","country_code":"RU","type":"education","lineage":["https://openalex.org/I4210116741"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Dmitrenok, Ilya","raw_affiliation_strings":["Innopolis University Innopolis , Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Innopolis University Innopolis , Russia","institution_ids":["https://openalex.org/I4210116741"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017043419","display_name":"Viktor Drobnyy","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210116741","display_name":"Innopolis University","ror":"https://ror.org/02b7jh107","country_code":"RU","type":"education","lineage":["https://openalex.org/I4210116741"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Drobnyy, Viktor","raw_affiliation_strings":["Innopolis University Innopolis , Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Innopolis University Innopolis , Russia","institution_ids":["https://openalex.org/I4210116741"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010557969","display_name":"Leonard Johard","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210116741","display_name":"Innopolis University","ror":"https://ror.org/02b7jh107","country_code":"RU","type":"education","lineage":["https://openalex.org/I4210116741"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Johard, Leonard","raw_affiliation_strings":["Innopolis University Innopolis , Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Innopolis University Innopolis , Russia","institution_ids":["https://openalex.org/I4210116741"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075175655","display_name":"Manuel Mazzara","orcid":"https://orcid.org/0000-0002-3860-4948","observed_orcids":["https://orcid.org/0000-0002-3860-4948"]},"institutions":[{"id":"https://openalex.org/I4210116741","display_name":"Innopolis University","ror":"https://ror.org/02b7jh107","country_code":"RU","type":"education","lineage":["https://openalex.org/I4210116741"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Mazzara, Manuel","raw_affiliation_strings":["Innopolis University Innopolis , Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Innopolis University Innopolis , Russia","institution_ids":["https://openalex.org/I4210116741"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210116741"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11195","display_name":"Simulation Techniques and Applications","score":0.6215999722480774,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11195","display_name":"Simulation Techniques and Applications","score":0.6215999722480774,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.06650000065565109,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10456","display_name":"Multi-Agent Systems and Negotiation","score":0.03590000048279762,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/spatial-hierarchy","display_name":"spatial hierarchy","score":0.9259999990463257},{"id":"https://openalex.org/keywords/agent-based-modeling","display_name":"agent-based modeling","score":0.9350000023841858},{"id":"https://openalex.org/keywords/spatial-search","display_name":"spatial search","score":0.8059999942779541},{"id":"https://openalex.org/keywords/performance-evaluation","display_name":"performance evaluation","score":0.5199999809265137},{"id":"https://openalex.org/keywords/spatial-data-structures","display_name":"spatial data structures","score":0.4959999918937683}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7195103168487549},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.698957085609436},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.4596083164215088},{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.42927002906799316},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3638307452201843},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35742515325546265},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3519657552242279},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.11779609322547913},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11643218994140625},{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:arXiv.org:1611.03358","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/abs/1611.03358","pdf_url":"https://arxiv.org/pdf/1611.03358","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"mag:2955433830","doi":null,"is_oa":true,"landing_page_url":"https://arxiv.org/pdf/1611.03358","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.1611.03358","doi":"https://doi.org/10.48550/arxiv.1611.03358","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1611.03358","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1611.03358","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/abs/1611.03358","pdf_url":"https://arxiv.org/pdf/1611.03358","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320330527","display_name":"Innopolis University","ror":"https://ror.org/02b7jh107"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2955433830.pdf","grobid_xml":"https://content.openalex.org/works/W2955433830.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1893942944","https://openalex.org/W1967961367","https://openalex.org/W2036011992","https://openalex.org/W2081347187","https://openalex.org/W2140054014","https://openalex.org/W2151292611","https://openalex.org/W2160135160","https://openalex.org/W2163415630","https://openalex.org/W2187933120","https://openalex.org/W2272546316","https://openalex.org/W2514480443","https://openalex.org/W2794630033"],"related_works":["https://openalex.org/W2575239939","https://openalex.org/W2038086155","https://openalex.org/W2171077829","https://openalex.org/W7095614763","https://openalex.org/W3109518866","https://openalex.org/W2144167783","https://openalex.org/W7095141706","https://openalex.org/W2505863191","https://openalex.org/W3152301385","https://openalex.org/W6925231735"],"abstract_inverted_index":{"Spatial":[0],"organization":[1],"is":[2,49],"a":[3,86],"core":[4],"challenge":[5],"for":[6,79,94,100],"all":[7],"large":[8],"agent-based":[9],"models":[10],"with":[11],"local":[12],"interactions.":[13],"In":[14,52],"biological":[15],"tissue":[16,92],"models,":[17],"spatial":[18,50,65,74],"search":[19],"and":[20,47,69],"reinsertion":[21],"are":[22,77],"frequently":[23],"reported":[24],"as":[25,97,99],"the":[26,31,35,62,89,101,104],"most":[27],"expensive":[28],"steps":[29],"of":[30,34,64,85,88,103,106],"simulation.":[32],"One":[33],"main":[36],"methods":[37],"utilized":[38],"in":[39],"order":[40],"to":[41,57,59,71],"maintain":[42],"both":[43],"favorable":[44],"algorithmic":[45],"complexity":[46],"accuracy":[48],"hierarchies.":[51],"this":[53],"paper,":[54],"we":[55],"seek":[56],"clarify":[58],"which":[60,73],"extent":[61],"choice":[63],"tree":[66,75],"affects":[67],"performance,":[68],"also":[70],"identify":[72],"families":[76],"optimal":[78],"such":[80],"scenarios.":[81],"We":[82],"make":[83],"use":[84],"prototype":[87],"new":[90],"BioDynaMo":[91],"simulator":[93],"evaluating":[95],"performances":[96],"well":[98],"implementation":[102],"characteristics":[105],"several":[107],"different":[108],"trees.":[109]},"counts_by_year":[{"year":2018,"cited_by_count":1}],"updated_date":"2026-11-03T10:50:19.383937","created_date":"2019-07-12T00:00:00"}