{"id":"https://openalex.org/W2954876467","doi":"https://doi.org/10.1074/mcp.tir118.001251","title":"MOGSA: Integrative Single Sample Gene-set Analysis of Multiple Omics Data","display_name":"MOGSA: Integrative Single Sample Gene-set Analysis of Multiple Omics Data","publication_year":2019,"publication_date":"2019-06-26","ids":{"openalex":"https://openalex.org/W2954876467","doi":"https://doi.org/10.1074/mcp.tir118.001251","mag":"2954876467","pmid":"https://pubmed.ncbi.nlm.nih.gov/31243065","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/6692785"},"language":"en","primary_location":{"id":"doi:10.1074/mcp.tir118.001251","doi":"https://doi.org/10.1074/mcp.tir118.001251","is_oa":true,"landing_page_url":"https://doi.org/10.1074/mcp.tir118.001251","pdf_url":null,"source":{"id":"https://openalex.org/S104550190","display_name":"Molecular & Cellular Proteomics","issn_l":"1535-9476","issn":["1535-9476","1535-9484"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-140","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular &amp; Cellular Proteomics","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1074/mcp.tir118.001251","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009094417","display_name":"Chen Meng","orcid":"https://orcid.org/0000-0002-5968-6719","observed_orcids":["https://orcid.org/0000-0002-5968-6719"]},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Chen Meng","raw_affiliation_strings":["Chair of Proteomics and Bioanalytics, Technische Universit\u00e4t M\u00fcnchen, Freising, Germany; Bavarian Biomolecular Mass Spectrometry Center (BayBioMS), TUM, Freising, Germany","Bavarian Biomolecular Mass Spectrometry Center (BayBioMS), TUM, Freising, Germany","Chair of Proteomics and Bioanalytics, Technische Universit\u00e4t M\u00fcnchen, Freising, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Proteomics and Bioanalytics, Technische Universit\u00e4t M\u00fcnchen, Freising, Germany; Bavarian Biomolecular Mass Spectrometry Center (BayBioMS), TUM, Freising, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Bavarian Biomolecular Mass Spectrometry Center (BayBioMS), TUM, Freising, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Chair of Proteomics and Bioanalytics, Technische Universit\u00e4t M\u00fcnchen, Freising, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019892104","display_name":"Azfar Basunia","orcid":"https://orcid.org/0000-0002-5180-619X","observed_orcids":["https://orcid.org/0000-0002-5180-619X"]},"institutions":[{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Azfar Basunia","raw_affiliation_strings":["Department of Data Science, Division of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Data Science, Division of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215","institution_ids":["https://openalex.org/I4210117453"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023547268","display_name":"Bjoern Peters","orcid":"https://orcid.org/0000-0002-8457-6693","observed_orcids":["https://orcid.org/0000-0002-8457-6693"]},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bjoern Peters","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, 9420 Athena Circle, La Jolla, California 92037"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, 9420 Athena Circle, La Jolla, California 92037","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053991514","display_name":"Amin Moghaddas Gholami","orcid":"https://orcid.org/0000-0002-5924-219X","observed_orcids":["https://orcid.org/0000-0002-5924-219X"]},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Amin Moghaddas Gholami","raw_affiliation_strings":["Chair of Proteomics and Bioanalytics, Technische Universit\u00e4t M\u00fcnchen, Freising, Germany. Electronic address: amin.gholami@roche.com","Chair of Proteomics and Bioanalytics, Technische Universit\u00e4t M\u00fcnchen, Freising, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Proteomics and Bioanalytics, Technische Universit\u00e4t M\u00fcnchen, Freising, Germany. Electronic address: amin.gholami@roche.com","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Chair of Proteomics and Bioanalytics, Technische Universit\u00e4t M\u00fcnchen, Freising, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058082024","display_name":"Bernhard K\u00fcster","orcid":"https://orcid.org/0000-0002-9094-1677","observed_orcids":["https://orcid.org/0000-0002-9094-1677"]},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Bernhard Kuster","raw_affiliation_strings":["Chair of Proteomics and Bioanalytics, Technische Universit\u00e4t M\u00fcnchen, Freising, Germany; Bavarian Biomolecular Mass Spectrometry Center (BayBioMS), TUM, Freising, Germany. Electronic address: kuster@tum.de","Bavarian Biomolecular Mass Spectrometry Center (BayBioMS), TUM, Freising, Germany","Chair of Proteomics and Bioanalytics, Technische Universit\u00e4t M\u00fcnchen, Freising, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Proteomics and Bioanalytics, Technische Universit\u00e4t M\u00fcnchen, Freising, Germany; Bavarian Biomolecular Mass Spectrometry Center (BayBioMS), TUM, Freising, Germany. Electronic address: kuster@tum.de","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Bavarian Biomolecular Mass Spectrometry Center (BayBioMS), TUM, Freising, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Chair of Proteomics and Bioanalytics, Technische Universit\u00e4t M\u00fcnchen, Freising, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082180580","display_name":"Aed\u00edn C. Culhane","orcid":"https://orcid.org/0000-0002-1395-9734","observed_orcids":["https://orcid.org/0000-0002-1395-9734"]},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]},{"id":"https://openalex.org/I4210134579","display_name":"Dana-Farber/Harvard Cancer Center","ror":"https://ror.org/03pvyf116","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210117453","https://openalex.org/I4210134579"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Aed\u00edn C. Culhane","raw_affiliation_strings":["Department of Data Science, Division of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02215. Electronic address: aedin@jimmy.harvard.edu","Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02215","Department of Data Science, Division of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Data Science, Division of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02215. Electronic address: aedin@jimmy.harvard.edu","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210117453","https://openalex.org/I4210134579"]},{"raw_affiliation_string":"Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02215","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Department of Data Science, Division of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215","institution_ids":["https://openalex.org/I4210117453"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5053991514","https://openalex.org/A5058082024","https://openalex.org/A5082180580"],"corresponding_institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210117453","https://openalex.org/I4210134579","https://openalex.org/I62916508"],"apc_list":{"value":3430,"currency":"USD","value_usd":3430},"apc_paid":{"value":3430,"currency":"USD","value_usd":3430},"fwci":2.7835,"has_fulltext":false,"cited_by_count":79,"citation_normalized_percentile":{"value":0.92256319,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"18","issue":"8","first_page":"S153","last_page":"S168"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multi-omics-integration","display_name":"multi-omics integration","score":0.7599999904632568},{"id":"https://openalex.org/keywords/pathway-enrichment-analysis","display_name":"pathway enrichment","score":0.6309999823570251},{"id":"https://openalex.org/keywords/low-dimensional-features","display_name":"low-dimensional feature representation","score":0.7139999866485596},{"id":"https://openalex.org/keywords/transcriptome-proteome-integration","display_name":"transcriptome-proteome integration","score":0.7250000238418579},{"id":"https://openalex.org/keywords/noise-reduction","display_name":"noise reduction","score":0.6660000085830688},{"id":"https://openalex.org/keywords/stem-cell-lines","display_name":"stem cell lines","score":0.765999972820282},{"id":"https://openalex.org/keywords/copy-number-variation","display_name":"copy number variation","score":0.9700000286102295},{"id":"https://openalex.org/keywords/mrna-expression","display_name":"mRNA expression","score":0.5490000247955322}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.635238528251648},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.5472251772880554},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.5327838659286499},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4546816647052765},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.4368603825569153},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3821678161621094},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35032913088798523},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3223422169685364},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3020104169845581},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1854686737060547},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0821695327758789},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0818815529346466},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001749","descriptor_name":"Urinary Bladder Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1074/mcp.tir118.001251","doi":"https://doi.org/10.1074/mcp.tir118.001251","is_oa":true,"landing_page_url":"https://doi.org/10.1074/mcp.tir118.001251","pdf_url":null,"source":{"id":"https://openalex.org/S104550190","display_name":"Molecular & Cellular Proteomics","issn_l":"1535-9476","issn":["1535-9476","1535-9484"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-140","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular &amp; Cellular Proteomics","raw_type":"journal-article"},{"id":"doi:10.1101/046904","doi":"https://doi.org/10.1101/046904","is_oa":true,"landing_page_url":"https://doi.org/10.1101/046904","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2018/12/21/046904.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmh:oai:europepmc.org:5644693","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6692785","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6692785","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6692785","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mol Cell Proteomics","raw_type":"Text"},{"id":"pmid:31243065","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31243065","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular & cellular proteomics : MCP","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1074/mcp.tir118.001251","doi":"https://doi.org/10.1074/mcp.tir118.001251","is_oa":true,"landing_page_url":"https://doi.org/10.1074/mcp.tir118.001251","pdf_url":null,"source":{"id":"https://openalex.org/S104550190","display_name":"Molecular & Cellular Proteomics","issn_l":"1535-9476","issn":["1535-9476","1535-9484"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-140","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular &amp; Cellular Proteomics","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G2800195642","display_name":null,"funder_award_id":"W81XWH-15\u20131-","funder_id":"https://openalex.org/F4320306078","funder_display_name":"U.S. Department of Defense"},{"id":"https://openalex.org/G3693587112","display_name":"Metabolic factors that control the spectrum of human tuberculosis","funder_award_id":"U19AI111224","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G4119534169","display_name":null,"funder_award_id":"W81XWH","funder_id":"https://openalex.org/F4320306078","funder_display_name":"U.S. Department of Defense"},{"id":"https://openalex.org/G4927837899","display_name":"DF/HCC Kidney Cancer SPORE","funder_award_id":"P50CA101942","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G529768537","display_name":"Integrated discovery and development of innovative TB Diagnostics","funder_award_id":"U19AI109755","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G5299753823","display_name":"THERAPEUTIC TARGETING OF NONMALIGNANT \"ACCESSORY\" CELLS IN BONE METASTASES OF HORMONE-RESISTANT ER-POSITIVE BREAST CANCER","funder_award_id":"W81XWH1510013","funder_id":"https://openalex.org/F4320306078","funder_display_name":"U.S. Department of Defense"},{"id":"https://openalex.org/G5850682332","display_name":null,"funder_award_id":"W81XWH","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7381081061","display_name":null,"funder_award_id":"CA101942","funder_id":"https://openalex.org/F4320310151","funder_display_name":"Dana-Farber Cancer Institute"},{"id":"https://openalex.org/G7442516968","display_name":"Accelerating Cancer Genomics with Cloud-scale Bioconductor","funder_award_id":"U01CA214846","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320306078","display_name":"U.S. Department of Defense","ror":"https://ror.org/0447fe631"},{"id":"https://openalex.org/F4320310151","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2954876467.pdf","grobid_xml":"https://content.openalex.org/works/W2954876467.grobid-xml"},"referenced_works_count":77,"referenced_works":["https://openalex.org/W109865423","https://openalex.org/W201784232","https://openalex.org/W1548779692","https://openalex.org/W1774711529","https://openalex.org/W1968206427","https://openalex.org/W1989654707","https://openalex.org/W1992014004","https://openalex.org/W1992045522","https://openalex.org/W1994018858","https://openalex.org/W2010457001","https://openalex.org/W2017071524","https://openalex.org/W2018821242","https://openalex.org/W2025303952","https://openalex.org/W2026096252","https://openalex.org/W2033775272","https://openalex.org/W2035297454","https://openalex.org/W2043795468","https://openalex.org/W2050357198","https://openalex.org/W2056571799","https://openalex.org/W2060842569","https://openalex.org/W2067964015","https://openalex.org/W2069860553","https://openalex.org/W2081043824","https://openalex.org/W2082253757","https://openalex.org/W2094013107","https://openalex.org/W2095463689","https://openalex.org/W2096192437","https://openalex.org/W2096217402","https://openalex.org/W2097453652","https://openalex.org/W2097553067","https://openalex.org/W2100980426","https://openalex.org/W2103017472","https://openalex.org/W2107564978","https://openalex.org/W2110687686","https://openalex.org/W2112662632","https://openalex.org/W2113387206","https://openalex.org/W2115462905","https://openalex.org/W2118526609","https://openalex.org/W2118827995","https://openalex.org/W2123879591","https://openalex.org/W2124614719","https://openalex.org/W2126144698","https://openalex.org/W2128551987","https://openalex.org/W2129256542","https://openalex.org/W2130410032","https://openalex.org/W2132688955","https://openalex.org/W2133174470","https://openalex.org/W2133465414","https://openalex.org/W2137499573","https://openalex.org/W2139036189","https://openalex.org/W2148541040","https://openalex.org/W2155320075","https://openalex.org/W2157852151","https://openalex.org/W2158384363","https://openalex.org/W2158485828","https://openalex.org/W2159707944","https://openalex.org/W2160866940","https://openalex.org/W2164222385","https://openalex.org/W2169622100","https://openalex.org/W2170376772","https://openalex.org/W2185207072","https://openalex.org/W2187089797","https://openalex.org/W2218734540","https://openalex.org/W2247766769","https://openalex.org/W2307267906","https://openalex.org/W2410823939","https://openalex.org/W2617515964","https://openalex.org/W2739492614","https://openalex.org/W2740163983","https://openalex.org/W2752426001","https://openalex.org/W2763670669","https://openalex.org/W2767092306","https://openalex.org/W2808845633","https://openalex.org/W2884724578","https://openalex.org/W2904372598","https://openalex.org/W2913710075","https://openalex.org/W2950245999"],"related_works":["https://openalex.org/W2790857455","https://openalex.org/W2808845633","https://openalex.org/W3112351970","https://openalex.org/W4312096896","https://openalex.org/W4409330844","https://openalex.org/W2994283242","https://openalex.org/W4380989752","https://openalex.org/W3199417889","https://openalex.org/W6941125436","https://openalex.org/W2170376772"],"abstract_inverted_index":{"Gene-set":[0],"analysis":[1,33,48,55,253],"(GSA)":[2],"summarizes":[3],"individual":[4],"molecular":[5,62,129,153,258],"measurements":[6],"to":[7,31,120,158,191,213,251],"more":[8],"interpretable":[9],"pathways":[10],"or":[11,198,240],"gene-sets":[12,163],"and":[13,61,99,164,206,216,221,232,254,267],"has":[14],"become":[15],"an":[16,101],"indispensable":[17],"step":[18],"in":[19,110,139,162,172,200,218,286],"the":[20,32,67,93,96,106,121,140,156,167,234,243,287],"interpretation":[21],"of":[22,34,70,79,123,152,169,185,195,203,224,228,236,270],"large-scale":[23],"omics":[24,36,89],"data.":[25,37,208],"However,":[26],"GSA":[27],"methods":[28],"are":[29,260,279],"limited":[30],"single":[35,52,174],"Here,":[38],"we":[39,145,181,188,210,248],"introduce":[40],"a":[41,50,75,193,225],"new":[42],"computation":[43],"method":[44,56,73],"termed":[45],"multi-omics":[46],"gene-set":[47,54,103,245],"(MOGSA),":[49],"multivariate":[51],"sample":[53],"that":[57,133,147,256],"integrates":[58],"multiple":[59,88,149],"experimental":[60,179],"data":[63,90,112,119,154,175,238,269],"types":[64],"measured":[65],"over":[66],"same":[68,97],"set":[69],"samples.":[71],"The":[72,275],"learns":[74],"low":[76],"dimensional":[77],"representation":[78],"most":[80,107],"variant":[81],"correlated":[82],"features":[83,94,109,124],"(genes,":[84],"proteins,":[85],"etc.)":[86],"across":[87],"sets,":[91],"transforms":[92],"onto":[95],"scale":[98],"calculates":[100],"integrated":[102,280],"score":[104],"from":[105,274],"informative":[108],"each":[111,237],"type.":[113,176],"MOGSA":[114,202,212,250,283],"does":[115],"not":[116],"require":[117],"filtering":[118],"intersection":[122],"(gene":[125],"IDs),":[126],"therefore,":[127],"all":[128],"features,":[130],"including":[131],"those":[132],"lack":[134],"annotation":[135],"may":[136,165],"be":[137],"included":[138],"analysis.":[141],"Using":[142,177],"simulated":[143],"data,":[144,180],"demonstrate":[146,182],"integrating":[148],"diverse":[150],"sources":[151],"increases":[155],"power":[157],"discover":[159,214],"subtle":[160],"changes":[161],"reduce":[166],"impact":[168],"unreliable":[170],"information":[171],"any":[173],"real":[178],"three":[183,257],"use-cases":[184],"MOGSA.":[186,282],"First,":[187],"show":[189,255],"how":[190],"remove":[192],"source":[194],"noise":[196],"(technical":[197],"biological)":[199],"integrative":[201],"NCI60":[204],"transcriptome":[205],"proteome":[207],"Second,":[209],"apply":[211,249],"similarities":[215],"differences":[217],"mRNA,":[219],"protein":[220],"phosphorylation":[222],"profiles":[223],"small":[226],"study":[227],"stem":[229],"cell":[230],"lines":[231],"assess":[233],"influence":[235],"type":[239],"feature":[241],"on":[242],"total":[244],"score.":[246],"Finally,":[247],"cluster":[252],"subtypes":[259],"robustly":[261],"discovered":[262],"when":[263],"copy":[264],"number":[265],"variation":[266],"mRNA":[268],"308":[271],"bladder":[272],"cancers":[273],"Cancer":[276],"Genome":[277],"Atlas":[278],"using":[281],"is":[284],"available":[285],"Bioconductor":[288],"R":[289],"package":[290],"\"mogsa.\"":[291]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2}],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2019-07-12T00:00:00"}
