{"id":"https://openalex.org/W2954036271","doi":"https://doi.org/10.1016/j.media.2019.06.009","title":"Bayesian bacterial detection using irregularly sampled optical endomicroscopy images","display_name":"Bayesian bacterial detection using irregularly sampled optical endomicroscopy images","publication_year":2019,"publication_date":"2019-06-24","ids":{"openalex":"https://openalex.org/W2954036271","doi":"https://doi.org/10.1016/j.media.2019.06.009","mag":"2954036271","pmid":"https://pubmed.ncbi.nlm.nih.gov/31261017"},"language":"en","primary_location":{"id":"doi:10.1016/j.media.2019.06.009","doi":"https://doi.org/10.1016/j.media.2019.06.009","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.media.2019.06.009","pdf_url":"https://ars.els-cdn.com/content/image/1-s2.0-S1361841519300544-fx1_lrg.jpg","source":{"id":"https://openalex.org/S116571295","display_name":"Medical Image Analysis","issn_l":"1361-8415","issn":["1361-8415","1361-8423","1361-8431"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["ccf-c","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-1","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Image Analysis","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ars.els-cdn.com/content/image/1-s2.0-S1361841519300544-fx1_lrg.jpg","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055467044","display_name":"Ahmed Karam Eldaly","orcid":"https://orcid.org/0000-0002-2266-6992","observed_orcids":["https://orcid.org/0000-0002-2266-6992"]},"institutions":[{"id":"https://openalex.org/I32062511","display_name":"Heriot-Watt University","ror":"https://ror.org/04mghma93","country_code":"GB","type":"education","lineage":["https://openalex.org/I32062511"]},{"id":"https://openalex.org/I4210151647","display_name":"Centre for Inflammation Research","ror":"https://ror.org/05wcr1b38","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210151647","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I4210164624","display_name":"The Queen's Medical Research Institute","ror":"https://ror.org/059zxg644","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210164624","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I84058292","display_name":"Helwan University","ror":"https://ror.org/00h55v928","country_code":"EG","type":"education","lineage":["https://openalex.org/I84058292"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["EG","GB"],"is_corresponding":true,"raw_author_name":"Ahmed Karam Eldaly","raw_affiliation_strings":["Electrical and Electronic Engineering Department, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, United Kingdom; MRC Centre for Inflammation Research, Queen's Medical Research Institute, The University of Edinburgh, Edinburgh, United Kingdom; Biomedical Engineering Department, Faculty of Engineering, Helwan University, Cairo, Egypt. Electronic address: ak577@hw.ac.uk","Biomedical Engineering Department, Faculty of Engineering, Helwan University, Cairo, Egypt","Electrical and Electronic Engineering Department, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, United Kingdom","MRC Centre for Inflammation Research, Queen\u2019s Medical Research Institute, The University of Edinburgh, Edinburgh, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0002-2266-6992","affiliations":[{"raw_affiliation_string":"Electrical and Electronic Engineering Department, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, United Kingdom; MRC Centre for Inflammation Research, Queen's Medical Research Institute, The University of Edinburgh, Edinburgh, United Kingdom; Biomedical Engineering Department, Faculty of Engineering, Helwan University, Cairo, Egypt. Electronic address: ak577@hw.ac.uk","institution_ids":["https://openalex.org/I32062511","https://openalex.org/I4210151647","https://openalex.org/I4210164624","https://openalex.org/I84058292","https://openalex.org/I98677209"]},{"raw_affiliation_string":"Biomedical Engineering Department, Faculty of Engineering, Helwan University, Cairo, Egypt","institution_ids":["https://openalex.org/I84058292"]},{"raw_affiliation_string":"Electrical and Electronic Engineering Department, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I32062511"]},{"raw_affiliation_string":"MRC Centre for Inflammation Research, Queen\u2019s Medical Research Institute, The University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I4210151647","https://openalex.org/I4210164624","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067973917","display_name":"Yoann Altmann","orcid":"https://orcid.org/0000-0002-3177-9884","observed_orcids":["https://orcid.org/0000-0002-3177-9884"]},"institutions":[{"id":"https://openalex.org/I32062511","display_name":"Heriot-Watt University","ror":"https://ror.org/04mghma93","country_code":"GB","type":"education","lineage":["https://openalex.org/I32062511"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Yoann Altmann","raw_affiliation_strings":["Electrical and Electronic Engineering Department, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, United Kingdom. Electronic address: Y.Altmann@hw.ac.uk","Electrical and Electronic Engineering Department, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical and Electronic Engineering Department, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, United Kingdom. Electronic address: Y.Altmann@hw.ac.uk","institution_ids":["https://openalex.org/I32062511"]},{"raw_affiliation_string":"Electrical and Electronic Engineering Department, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I32062511"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040826518","display_name":"Ahsan R. Akram","orcid":"https://orcid.org/0000-0003-4605-1682","observed_orcids":["https://orcid.org/0000-0003-4605-1682","https://orcid.org/0000-0001-7100-0233"]},"institutions":[{"id":"https://openalex.org/I4210151647","display_name":"Centre for Inflammation Research","ror":"https://ror.org/05wcr1b38","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210151647","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I4210164624","display_name":"The Queen's Medical Research Institute","ror":"https://ror.org/059zxg644","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210164624","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ahsan Akram","raw_affiliation_strings":["MRC Centre for Inflammation Research, Queen's Medical Research Institute, The University of Edinburgh, Edinburgh, United Kingdom. Electronic address: Ahsan.Akram@ed.ac.uk","MRC Centre for Inflammation Research, Queen\u2019s Medical Research Institute, The University of Edinburgh, Edinburgh, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Centre for Inflammation Research, Queen's Medical Research Institute, The University of Edinburgh, Edinburgh, United Kingdom. Electronic address: Ahsan.Akram@ed.ac.uk","institution_ids":["https://openalex.org/I4210151647","https://openalex.org/I4210164624","https://openalex.org/I98677209"]},{"raw_affiliation_string":"MRC Centre for Inflammation Research, Queen\u2019s Medical Research Institute, The University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I4210151647","https://openalex.org/I4210164624","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078195793","display_name":"Paul McCool","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I2800201399","display_name":"NHS Greater Glasgow and Clyde","ror":"https://ror.org/05kdz4d87","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2800201399"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul McCool","raw_affiliation_strings":["Medical Devices Unit, NHS Greater Glasgow & Clyde, United Kingdom. Electronic address: Paul.McCool@nhs.net","Medical Devices Unit, NHS Greater Glasgow & Clyde, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Devices Unit, NHS Greater Glasgow & Clyde, United Kingdom. Electronic address: Paul.McCool@nhs.net","institution_ids":["https://openalex.org/I2800201399"]},{"raw_affiliation_string":"Medical Devices Unit, NHS Greater Glasgow & Clyde, United Kingdom","institution_ids":["https://openalex.org/I2800201399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031813365","display_name":"Antonios Perperidis","orcid":"https://orcid.org/0000-0001-9010-9656","observed_orcids":["https://orcid.org/0000-0001-9010-9656"]},"institutions":[{"id":"https://openalex.org/I32062511","display_name":"Heriot-Watt University","ror":"https://ror.org/04mghma93","country_code":"GB","type":"education","lineage":["https://openalex.org/I32062511"]},{"id":"https://openalex.org/I4210151647","display_name":"Centre for Inflammation Research","ror":"https://ror.org/05wcr1b38","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210151647","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I4210164624","display_name":"The Queen's Medical Research Institute","ror":"https://ror.org/059zxg644","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210164624","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Antonios Perperidis","raw_affiliation_strings":["Electrical and Electronic Engineering Department, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, United Kingdom; MRC Centre for Inflammation Research, Queen's Medical Research Institute, The University of Edinburgh, Edinburgh, United Kingdom. Electronic address: A.Perperidis@hw.ac.uk","Electrical and Electronic Engineering Department, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, United Kingdom","MRC Centre for Inflammation Research, Queen\u2019s Medical Research Institute, The University of Edinburgh, Edinburgh, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0001-9010-9656","affiliations":[{"raw_affiliation_string":"Electrical and Electronic Engineering Department, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, United Kingdom; MRC Centre for Inflammation Research, Queen's Medical Research Institute, The University of Edinburgh, Edinburgh, United Kingdom. Electronic address: A.Perperidis@hw.ac.uk","institution_ids":["https://openalex.org/I32062511","https://openalex.org/I4210151647","https://openalex.org/I4210164624","https://openalex.org/I98677209"]},{"raw_affiliation_string":"Electrical and Electronic Engineering Department, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I32062511"]},{"raw_affiliation_string":"MRC Centre for Inflammation Research, Queen\u2019s Medical Research Institute, The University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I4210151647","https://openalex.org/I4210164624","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053576296","display_name":"Kevin Dhaliwal","orcid":"https://orcid.org/0000-0002-3925-3174","observed_orcids":["https://orcid.org/0000-0002-3925-3174"]},"institutions":[{"id":"https://openalex.org/I4210151647","display_name":"Centre for Inflammation Research","ror":"https://ror.org/05wcr1b38","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210151647","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I4210164624","display_name":"The Queen's Medical Research Institute","ror":"https://ror.org/059zxg644","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210164624","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kevin Dhaliwal","raw_affiliation_strings":["MRC Centre for Inflammation Research, Queen's Medical Research Institute, The University of Edinburgh, Edinburgh, United Kingdom. Electronic address: Kev.Dhaliwal@ed.ac.uk","MRC Centre for Inflammation Research, Queen\u2019s Medical Research Institute, The University of Edinburgh, Edinburgh, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Centre for Inflammation Research, Queen's Medical Research Institute, The University of Edinburgh, Edinburgh, United Kingdom. Electronic address: Kev.Dhaliwal@ed.ac.uk","institution_ids":["https://openalex.org/I4210151647","https://openalex.org/I98677209"]},{"raw_affiliation_string":"MRC Centre for Inflammation Research, Queen\u2019s Medical Research Institute, The University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I4210151647","https://openalex.org/I4210164624","https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010538525","display_name":"Stephen McLaughlin","orcid":"https://orcid.org/0000-0002-9558-8294","observed_orcids":["https://orcid.org/0000-0002-9558-8294"]},"institutions":[{"id":"https://openalex.org/I32062511","display_name":"Heriot-Watt University","ror":"https://ror.org/04mghma93","country_code":"GB","type":"education","lineage":["https://openalex.org/I32062511"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stephen McLaughlin","raw_affiliation_strings":["Electrical and Electronic Engineering Department, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, United Kingdom. Electronic address: S.McLaughlin@ac.ac.uk","Electrical and Electronic Engineering Department, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical and Electronic Engineering Department, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, United Kingdom. Electronic address: S.McLaughlin@ac.ac.uk","institution_ids":["https://openalex.org/I32062511"]},{"raw_affiliation_string":"Electrical and Electronic Engineering Department, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I32062511"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5055467044"],"corresponding_institution_ids":["https://openalex.org/I32062511","https://openalex.org/I4210151647","https://openalex.org/I4210164624","https://openalex.org/I84058292","https://openalex.org/I98677209"],"apc_list":{"value":3150,"currency":"USD","value_usd":3150},"apc_paid":{"value":3150,"currency":"USD","value_usd":3150},"fwci":0.2851,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.55646647,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":92,"max":97},"biblio":{"volume":"57","issue":null,"first_page":"18","last_page":"31"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10977","display_name":"Optical Imaging and Spectroscopy Techniques","score":0.25679999589920044,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10977","display_name":"Optical Imaging and Spectroscopy Techniques","score":0.25679999589920044,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.1574999988079071,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.07169999927282333,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bacterial-detection","display_name":"bacterial detection","score":0.9359999895095825},{"id":"https://openalex.org/keywords/bayesian-detection","display_name":"Bayesian detection","score":0.47200000286102295},{"id":"https://openalex.org/keywords/pneumonia","display_name":"pneumonia","score":0.6240000128746033},{"id":"https://openalex.org/keywords/pulmonary-infection","display_name":"pulmonary infection","score":0.5899999737739563},{"id":"https://openalex.org/keywords/fluorescence-imaging","display_name":"fluorescence imaging","score":0.5139999985694885},{"id":"https://openalex.org/keywords/markov-chain-monte-carlo","display_name":"Markov chain Monte Carlo","score":0.8230000138282776},{"id":"https://openalex.org/keywords/gram-stain","display_name":"Gram staining","score":0.35499998927116394},{"id":"https://openalex.org/keywords/image-denoising","display_name":"image denoising","score":0.4830000102519989}],"concepts":[{"id":"https://openalex.org/C111350023","wikidata":"https://www.wikidata.org/wiki/Q1191869","display_name":"Markov chain Monte Carlo","level":3,"score":0.6313104629516602},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5565798878669739},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.5495553612709045},{"id":"https://openalex.org/C57830394","wikidata":"https://www.wikidata.org/wiki/Q278079","display_name":"Posterior probability","level":3,"score":0.5209387540817261},{"id":"https://openalex.org/C17480853","wikidata":"https://www.wikidata.org/wiki/Q5376368","display_name":"Endomicroscopy","level":3,"score":0.5160114765167236},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5046254396438599},{"id":"https://openalex.org/C79337645","wikidata":"https://www.wikidata.org/wiki/Q779824","display_name":"Outlier","level":2,"score":0.5018918514251709},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4961410462856293},{"id":"https://openalex.org/C19499675","wikidata":"https://www.wikidata.org/wiki/Q232207","display_name":"Monte Carlo method","level":2,"score":0.47446566820144653},{"id":"https://openalex.org/C158424031","wikidata":"https://www.wikidata.org/wiki/Q1191905","display_name":"Gibbs sampling","level":3,"score":0.47174227237701416},{"id":"https://openalex.org/C160234255","wikidata":"https://www.wikidata.org/wiki/Q812535","display_name":"Bayesian inference","level":3,"score":0.4382427930831909},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2710658609867096},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.2638810873031616},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C136009344","wikidata":"https://www.wikidata.org/wiki/Q336201","display_name":"Confocal","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005336","descriptor_name":"Fiber Optic Technology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008168","descriptor_name":"Lung","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D008168","descriptor_name":"Lung","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019723","descriptor_name":"Endoscopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1016/j.media.2019.06.009","doi":"https://doi.org/10.1016/j.media.2019.06.009","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.media.2019.06.009","pdf_url":"https://ars.els-cdn.com/content/image/1-s2.0-S1361841519300544-fx1_lrg.jpg","source":{"id":"https://openalex.org/S116571295","display_name":"Medical Image Analysis","issn_l":"1361-8415","issn":["1361-8415","1361-8423","1361-8431"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["ccf-c","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-1","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Image Analysis","raw_type":"journal-article"},{"id":"pmid:31261017","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31261017","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical image analysis","raw_type":"Journal Article"},{"id":"pmh:oai:pure.ed.ac.uk:openaire/44988308-fb88-416f-9634-85020939a150","doi":null,"is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/44988308-fb88-416f-9634-85020939a150","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Eldaly, A K, Altmann, Y, Akram, A, McCool, P, Perperidis, A, Dhaliwal, K & McLaughlin, S 2019, 'Bayesian bacterial detection using irregularly sampled optical endomicroscopy images', Medical Image Analysis, vol. 57, pp. 18-31. https://doi.org/10.1016/j.media.2019.06.009","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"doi:10.60692/95z25-bbf56","doi":"https://doi.org/10.60692/95z25-bbf56","is_oa":true,"landing_page_url":"https://doi.org/10.60692/95z25-bbf56","pdf_url":null,"source":{"id":"https://openalex.org/S7407051682","display_name":"Greater South Information System","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.60692/bz71p-mr626","doi":"https://doi.org/10.60692/bz71p-mr626","is_oa":true,"landing_page_url":"https://doi.org/10.60692/bz71p-mr626","pdf_url":null,"source":{"id":"https://openalex.org/S7407051682","display_name":"Greater South Information System","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1016/j.media.2019.06.009","doi":"https://doi.org/10.1016/j.media.2019.06.009","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.media.2019.06.009","pdf_url":"https://ars.els-cdn.com/content/image/1-s2.0-S1361841519300544-fx1_lrg.jpg","source":{"id":"https://openalex.org/S116571295","display_name":"Medical Image Analysis","issn_l":"1361-8415","issn":["1361-8415","1361-8423","1361-8431"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["ccf-c","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-1","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Image Analysis","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.6240000128746033}],"study_designs":[],"awards":[{"id":"https://openalex.org/G2633476858","display_name":"Multiplexed 'Touch and Tell' Optical Molecular Sensing and Imaging","funder_award_id":"EP/K03197X/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G4162799881","display_name":"EPSRC IRC Proteus - Multiplexed 'Touch and Tell' Optical Molecular Sensing and Imaging - Lifetime and Beyond","funder_award_id":"EP/R005257/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G789800706","display_name":null,"funder_award_id":"EP/K03197X","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8145101974","display_name":null,"funder_award_id":"RF201617/16/31","funder_id":"https://openalex.org/F4320320005","funder_display_name":"Royal Academy of Engineering"},{"id":"https://openalex.org/G827939624","display_name":null,"funder_award_id":"RF201617","funder_id":"https://openalex.org/F4320320005","funder_display_name":"Royal Academy of Engineering"}],"funders":[{"id":"https://openalex.org/F4320320005","display_name":"Royal Academy of Engineering","ror":"https://ror.org/0526snb40"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2954036271.pdf","grobid_xml":"https://content.openalex.org/works/W2954036271.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W36820714","https://openalex.org/W75188645","https://openalex.org/W143236119","https://openalex.org/W1003853626","https://openalex.org/W1504646685","https://openalex.org/W1577802689","https://openalex.org/W1760619050","https://openalex.org/W1776742496","https://openalex.org/W1800499965","https://openalex.org/W1908908335","https://openalex.org/W1915402522","https://openalex.org/W1961730324","https://openalex.org/W1970418973","https://openalex.org/W1977330664","https://openalex.org/W1978163802","https://openalex.org/W1985093013","https://openalex.org/W1989692914","https://openalex.org/W2005314985","https://openalex.org/W2006681603","https://openalex.org/W2010785055","https://openalex.org/W2033765726","https://openalex.org/W2043723069","https://openalex.org/W2045656233","https://openalex.org/W2050272999","https://openalex.org/W2053614228","https://openalex.org/W2058501113","https://openalex.org/W2058856043","https://openalex.org/W2064931480","https://openalex.org/W2065969007","https://openalex.org/W2071338232","https://openalex.org/W2087594614","https://openalex.org/W2091300140","https://openalex.org/W2091693534","https://openalex.org/W2096675754","https://openalex.org/W2109200236","https://openalex.org/W2114371913","https://openalex.org/W2128884071","https://openalex.org/W2135526509","https://openalex.org/W2141159272","https://openalex.org/W2142907343","https://openalex.org/W2146898448","https://openalex.org/W2157659490","https://openalex.org/W2159780964","https://openalex.org/W2164969270","https://openalex.org/W2167336252","https://openalex.org/W2275711475","https://openalex.org/W2344156890","https://openalex.org/W2345215099","https://openalex.org/W2518068010","https://openalex.org/W2519354012","https://openalex.org/W2520723410","https://openalex.org/W2526643056","https://openalex.org/W2585687320","https://openalex.org/W2613832406","https://openalex.org/W2806641269","https://openalex.org/W2888946848","https://openalex.org/W2898566711","https://openalex.org/W2959879017","https://openalex.org/W2963855168","https://openalex.org/W2997720601","https://openalex.org/W3023742835","https://openalex.org/W4292403327","https://openalex.org/W4365806309","https://openalex.org/W6727040340"],"related_works":["https://openalex.org/W4391593945","https://openalex.org/W7155511500","https://openalex.org/W4412601579","https://openalex.org/W4404577189","https://openalex.org/W2898566711","https://openalex.org/W4392803239","https://openalex.org/W2585687320","https://openalex.org/W4405491562","https://openalex.org/W4206674430","https://openalex.org/W2001421232"],"abstract_inverted_index":{"Pneumonia":[0],"is":[1,40,97,131,160,174,187,190,235],"a":[2,32,79,98,134,155,218],"major":[3],"cause":[4],"of":[5,9,16,22,69,72,101,167,223,230],"morbidity":[6],"and":[7,19,48,74,116,137,221],"mortality":[8],"patients":[10],"in":[11,26,62,64,85,133,199,206],"intensive":[12],"care.":[13],"Rapid":[14],"determination":[15],"the":[17,23,27,58,70,93,102,143,164,168,207,224,231],"presence":[18],"gram":[20],"status":[21],"pathogenic":[24],"bacteria":[25,128,203,214],"distal":[28,208],"lung":[29,197],"may":[30],"enable":[31],"more":[33],"tailored":[34],"treatment":[35],"regime.":[36],"Optical":[37],"Endomicroscopy":[38],"(OEM)":[39],"an":[41,119],"emerging":[42],"medical":[43],"imaging":[44],"platform":[45],"with":[46,107],"preclinical":[47],"clinical":[49],"utility.":[50],"Pulmonary":[51],"OEM":[52,86],"via":[53],"multi-core":[54],"fibre":[55],"bundles":[56],"has":[57],"potential":[59],"to":[60,142,162],"provide":[61],"vivo,":[63],"situ,":[65],"fluorescent":[66],"molecular":[67],"signatures":[68],"causes":[71],"infection":[73],"inflammation.":[75],"This":[76],"paper":[77],"presents":[78],"Bayesian":[80,135],"approach":[81],"for":[82,183],"bacterial":[83],"detection":[84,129],"images.":[87],"The":[88,127,171],"model":[89,145],"considered":[90],"assumes":[91],"that":[92],"observed":[94],"pixel":[95],"fluorescence":[96],"linear":[99],"combination":[100],"actual":[103],"intensity":[104],"value":[105],"associated":[106],"tissues":[108],"or":[109],"background,":[110],"corrupted":[111],"by":[112,118,177,217],"additive":[113],"Gaussian":[114],"noise":[115],"potentially":[117],"additional":[120],"sparse":[121],"outlier":[122],"term":[123],"modelling":[124],"anomalies":[125],"(bacteria).":[126],"problem":[130],"formulated":[132],"framework":[136],"prior":[138],"distributions":[139],"are":[140,204],"assigned":[141],"unknown":[144,169],"parameters.":[146,170],"A":[147,210],"Markov":[148],"chain":[149],"Monte":[150],"Carlo":[151],"algorithm":[152,173],"based":[153],"on":[154],"partially":[156],"collapsed":[157],"Gibbs":[158],"sampler":[159],"used":[161],"sample":[163],"posterior":[165],"distribution":[166],"proposed":[172,225],"first":[175],"validated":[176],"simulations":[178],"conducted":[179,192],"using":[180,193],"synthetic":[181],"datasets":[182,198],"which":[184,200,227],"good":[185,211],"performance":[186],"obtained.":[188],"Analysis":[189],"then":[191],"two":[194],"ex":[195],"vivo":[196],"fluorescently":[201],"labelled":[202],"present":[205],"lung.":[209],"correlation":[212],"between":[213],"counts":[215],"identified":[216],"trained":[219],"clinician":[220],"those":[222],"method,":[226],"detects":[228],"most":[229],"manually":[232],"annotated":[233],"regions,":[234],"observed.":[236]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":2}],"updated_date":"2026-11-05T12:25:35.769452","created_date":"2019-07-12T00:00:00"}