{"id":"https://openalex.org/W2952835014","doi":"https://doi.org/10.1093/nar/gkz418","title":"FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences","display_name":"FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences","publication_year":2019,"publication_date":"2019-05-07","ids":{"openalex":"https://openalex.org/W2952835014","doi":"https://doi.org/10.1093/nar/gkz418","mag":"2952835014","pmid":"https://pubmed.ncbi.nlm.nih.gov/31114866","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/6698650"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz418","doi":"https://doi.org/10.1093/nar/gkz418","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz418","pdf_url":"https://academic.oup.com/nar/article-pdf/47/14/e83/29184794/gkz418.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/47/14/e83/29184794/gkz418.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077279843","display_name":"Jenai Quan","orcid":"https://orcid.org/0000-0002-2311-249X","observed_orcids":["https://orcid.org/0000-0002-2311-249X"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I4210100286","display_name":"Chan Zuckerberg Biohub San Francisco","ror":"https://ror.org/00knt4f32","country_code":"US","type":"facility","lineage":["https://openalex.org/I180670191","https://openalex.org/I4210100286","https://openalex.org/I4210121800","https://openalex.org/I95457486","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jenai Quan","raw_affiliation_strings":["Chan Zuckerberg Biohub, San Francisco, CA 94158, USA","Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA\u00a094158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Biohub, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I4210100286"]},{"raw_affiliation_string":"Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA\u00a094158, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001223291","display_name":"Charles Langelier","orcid":"https://orcid.org/0000-0002-6708-4646","observed_orcids":["https://orcid.org/0000-0002-6708-4646"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles Langelier","raw_affiliation_strings":["Division of Infectious Diseases, Department of Medicine, University of California San Francisco, San Francisco, CA\u00a094158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Infectious Diseases, Department of Medicine, University of California San Francisco, San Francisco, CA\u00a094158, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083620330","display_name":"Alison L. Kuchta","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alison Kuchta","raw_affiliation_strings":["Department of Pediatrics, University of California San Francisco, San Francisco, CA 94158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, University of California San Francisco, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029631340","display_name":"Joshua Batson","orcid":"https://orcid.org/0000-0002-9244-2142","observed_orcids":["https://orcid.org/0000-0002-9244-2142"]},"institutions":[{"id":"https://openalex.org/I4210100286","display_name":"Chan Zuckerberg Biohub San Francisco","ror":"https://ror.org/00knt4f32","country_code":"US","type":"facility","lineage":["https://openalex.org/I180670191","https://openalex.org/I4210100286","https://openalex.org/I4210121800","https://openalex.org/I95457486","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua Batson","raw_affiliation_strings":["Chan Zuckerberg Biohub, San Francisco, CA 94158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Biohub, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I4210100286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046009741","display_name":"Noam Teyssier","orcid":"https://orcid.org/0000-0003-4001-6296","observed_orcids":["https://orcid.org/0000-0003-4001-6296"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Noam Teyssier","raw_affiliation_strings":["Division of Infectious Diseases, Department of Medicine, University of California San Francisco, San Francisco, CA\u00a094158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Infectious Diseases, Department of Medicine, University of California San Francisco, San Francisco, CA\u00a094158, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074459759","display_name":"Amy Lyden","orcid":"https://orcid.org/0000-0002-5909-9995","observed_orcids":["https://orcid.org/0000-0002-5909-9995"]},"institutions":[{"id":"https://openalex.org/I4210100286","display_name":"Chan Zuckerberg Biohub San Francisco","ror":"https://ror.org/00knt4f32","country_code":"US","type":"facility","lineage":["https://openalex.org/I180670191","https://openalex.org/I4210100286","https://openalex.org/I4210121800","https://openalex.org/I95457486","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amy Lyden","raw_affiliation_strings":["Chan Zuckerberg Biohub, San Francisco, CA 94158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Biohub, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I4210100286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090610459","display_name":"Saharai Caldera","orcid":"https://orcid.org/0000-0001-5057-9186","observed_orcids":["https://orcid.org/0000-0001-5057-9186"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Saharai Caldera","raw_affiliation_strings":["Division of Infectious Diseases, Department of Medicine, University of California San Francisco, San Francisco, CA\u00a094158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Infectious Diseases, Department of Medicine, University of California San Francisco, San Francisco, CA\u00a094158, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051586699","display_name":"Aaron McGeever","orcid":"https://orcid.org/0000-0003-1596-207X","observed_orcids":["https://orcid.org/0000-0003-1596-207X"]},"institutions":[{"id":"https://openalex.org/I4210100286","display_name":"Chan Zuckerberg Biohub San Francisco","ror":"https://ror.org/00knt4f32","country_code":"US","type":"facility","lineage":["https://openalex.org/I180670191","https://openalex.org/I4210100286","https://openalex.org/I4210121800","https://openalex.org/I95457486","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aaron McGeever","raw_affiliation_strings":["Chan Zuckerberg Biohub, San Francisco, CA 94158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Biohub, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I4210100286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067607254","display_name":"Boris Dimitrov","orcid":"https://orcid.org/0000-0002-0018-1775","observed_orcids":["https://orcid.org/0000-0002-0018-1775"]},"institutions":[{"id":"https://openalex.org/I4210121800","display_name":"Chan Zuckerberg Initiative (United States)","ror":"https://ror.org/02qenvm24","country_code":"US","type":"company","lineage":["https://openalex.org/I4210121800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Boris Dimitrov","raw_affiliation_strings":["Chan Zuckerberg Initiative, Redwood City, CA 94063, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Initiative, Redwood City, CA 94063, USA","institution_ids":["https://openalex.org/I4210121800"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Ryan King","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210121800","display_name":"Chan Zuckerberg Initiative (United States)","ror":"https://ror.org/02qenvm24","country_code":"US","type":"company","lineage":["https://openalex.org/I4210121800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ryan King","raw_affiliation_strings":["Chan Zuckerberg Initiative, Redwood City, CA 94063, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Initiative, Redwood City, CA 94063, USA","institution_ids":["https://openalex.org/I4210121800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003544258","display_name":"Jordan Wilheim","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jordan Wilheim","raw_affiliation_strings":["Division of HIV, Infectious Diseases and Global Medicine, Department of Medicine, University of California San Francisco, San Francisco, CA 94143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of HIV, Infectious Diseases and Global Medicine, Department of Medicine, University of California San Francisco, San Francisco, CA 94143, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059518162","display_name":"Maxwell Murphy","orcid":"https://orcid.org/0000-0003-0332-4388","observed_orcids":["https://orcid.org/0000-0003-0332-4388"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maxwell Murphy","raw_affiliation_strings":["Division of HIV, Infectious Diseases and Global Medicine, Department of Medicine, University of California San Francisco, San Francisco, CA 94143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of HIV, Infectious Diseases and Global Medicine, Department of Medicine, University of California San Francisco, San Francisco, CA 94143, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005329141","display_name":"Lara Pesce-Ares","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210100286","display_name":"Chan Zuckerberg Biohub San Francisco","ror":"https://ror.org/00knt4f32","country_code":"US","type":"facility","lineage":["https://openalex.org/I180670191","https://openalex.org/I4210100286","https://openalex.org/I4210121800","https://openalex.org/I95457486","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lara Pesce Ares","raw_affiliation_strings":["Chan Zuckerberg Biohub, San Francisco, CA 94158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Biohub, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I4210100286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067146249","display_name":"Katherine A. Travisano","orcid":"https://orcid.org/0000-0002-4371-8958","observed_orcids":["https://orcid.org/0000-0002-4371-8958"]},"institutions":[{"id":"https://openalex.org/I4210100286","display_name":"Chan Zuckerberg Biohub San Francisco","ror":"https://ror.org/00knt4f32","country_code":"US","type":"facility","lineage":["https://openalex.org/I180670191","https://openalex.org/I4210100286","https://openalex.org/I4210121800","https://openalex.org/I95457486","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Katherine A Travisano","raw_affiliation_strings":["Chan Zuckerberg Biohub, San Francisco, CA 94158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Biohub, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I4210100286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060329649","display_name":"Rene V. Sit","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210100286","display_name":"Chan Zuckerberg Biohub San Francisco","ror":"https://ror.org/00knt4f32","country_code":"US","type":"facility","lineage":["https://openalex.org/I180670191","https://openalex.org/I4210100286","https://openalex.org/I4210121800","https://openalex.org/I95457486","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rene Sit","raw_affiliation_strings":["Chan Zuckerberg Biohub, San Francisco, CA 94158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Biohub, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I4210100286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075993058","display_name":"Roberto Amato","orcid":"https://orcid.org/0000-0001-8633-9221","observed_orcids":["https://orcid.org/0000-0001-8633-9221"]},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Roberto Amato","raw_affiliation_strings":["Wellcome Sanger Institute, Hinxton CB10 1SA, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Sanger Institute, Hinxton CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001472356","display_name":"Davis Ropafadzo Mumbengegwi","orcid":"https://orcid.org/0000-0001-9176-904X","observed_orcids":["https://orcid.org/0000-0001-9176-904X"]},"institutions":[{"id":"https://openalex.org/I217085601","display_name":"University of Namibia","ror":"https://ror.org/016xje988","country_code":"NA","type":"education","lineage":["https://openalex.org/I217085601"]}],"countries":["NA"],"is_corresponding":false,"raw_author_name":"Davis R Mumbengegwi","raw_affiliation_strings":["Multidisciplinary Research Centre, University of Namibia, Windhoek\u00a093Q5+48, Namibia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Multidisciplinary Research Centre, University of Namibia, Windhoek\u00a093Q5+48, Namibia","institution_ids":["https://openalex.org/I217085601"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101915316","display_name":"Jennifer L. Smith","orcid":"https://orcid.org/0000-0002-9244-4412","observed_orcids":["https://orcid.org/0000-0002-9244-4412"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer L Smith","raw_affiliation_strings":["Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA 94158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063755421","display_name":"Adam F. Bennett","orcid":"https://orcid.org/0000-0002-7028-311X","observed_orcids":["https://orcid.org/0000-0002-7028-311X"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Bennett","raw_affiliation_strings":["Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA 94158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046328079","display_name":"Roly Daniel Gosling","orcid":"https://orcid.org/0000-0001-6291-0024","observed_orcids":["https://orcid.org/0000-0001-6291-0024"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roly Gosling","raw_affiliation_strings":["Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA 94158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006357599","display_name":"Peter M. Mourani","orcid":"https://orcid.org/0000-0002-1829-3775","observed_orcids":["https://orcid.org/0000-0002-1829-3775"]},"institutions":[{"id":"https://openalex.org/I4210096275","display_name":"Children's Hospital Colorado","ror":"https://ror.org/00mj9k629","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210096275"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter M Mourani","raw_affiliation_strings":["Section of Critical Care Medicine, Department of Pediatrics, University of Colorado School of Medicine and Children's Hospital Colorado, Aurora, CO 80045, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Section of Critical Care Medicine, Department of Pediatrics, University of Colorado School of Medicine and Children's Hospital Colorado, Aurora, CO 80045, USA","institution_ids":["https://openalex.org/I4210096275","https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062212651","display_name":"Carolyn S. Calfee","orcid":"https://orcid.org/0000-0001-9208-6865","observed_orcids":["https://orcid.org/0000-0001-9208-6865"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carolyn S Calfee","raw_affiliation_strings":["Division of Pulmonary and Critical Care Medicine, Department of Medicine, University of California San Francisco, San Francisco, CA 94158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Pulmonary and Critical Care Medicine, Department of Medicine, University of California San Francisco, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057844463","display_name":"Norma F Neff","orcid":"https://orcid.org/0000-0001-7141-5420","observed_orcids":["https://orcid.org/0000-0001-7141-5420"]},"institutions":[{"id":"https://openalex.org/I4210100286","display_name":"Chan Zuckerberg Biohub San Francisco","ror":"https://ror.org/00knt4f32","country_code":"US","type":"facility","lineage":["https://openalex.org/I180670191","https://openalex.org/I4210100286","https://openalex.org/I4210121800","https://openalex.org/I95457486","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Norma F Neff","raw_affiliation_strings":["Chan Zuckerberg Biohub, San Francisco, CA 94158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Biohub, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I4210100286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091824858","display_name":"Eric D. Chow","orcid":"https://orcid.org/0000-0001-8079-918X","observed_orcids":["https://orcid.org/0000-0001-8079-918X"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric D Chow","raw_affiliation_strings":["Center for Advanced Technology, University of California San Francisco, San Francisco, CA\u00a094158, USA","Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA\u00a094158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Advanced Technology, University of California San Francisco, San Francisco, CA\u00a094158, USA","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA\u00a094158, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100672880","display_name":"Peter S. Kim","orcid":"https://orcid.org/0000-0001-6503-4541","observed_orcids":["https://orcid.org/0000-0001-6503-4541"]},"institutions":[{"id":"https://openalex.org/I4210100286","display_name":"Chan Zuckerberg Biohub San Francisco","ror":"https://ror.org/00knt4f32","country_code":"US","type":"facility","lineage":["https://openalex.org/I180670191","https://openalex.org/I4210100286","https://openalex.org/I4210121800","https://openalex.org/I95457486","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter S Kim","raw_affiliation_strings":["Chan Zuckerberg Biohub, San Francisco, CA 94158, USA","Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305, USA","Stanford ChEM-H, Stanford, CA 94305, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Biohub, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I4210100286"]},{"raw_affiliation_string":"Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford ChEM-H, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054207126","display_name":"Bryan Greenhouse","orcid":"https://orcid.org/0000-0003-0287-9111","observed_orcids":["https://orcid.org/0000-0003-0287-9111"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I4210100286","display_name":"Chan Zuckerberg Biohub San Francisco","ror":"https://ror.org/00knt4f32","country_code":"US","type":"facility","lineage":["https://openalex.org/I180670191","https://openalex.org/I4210100286","https://openalex.org/I4210121800","https://openalex.org/I95457486","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryan Greenhouse","raw_affiliation_strings":["Chan Zuckerberg Biohub, San Francisco, CA 94158, USA","Division of HIV, Infectious Diseases and Global Medicine, Department of Medicine, University of California San Francisco, San Francisco, CA 94143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Biohub, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I4210100286"]},{"raw_affiliation_string":"Division of HIV, Infectious Diseases and Global Medicine, Department of Medicine, University of California San Francisco, San Francisco, CA 94143, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039824565","display_name":"Joseph L. DeRisi","orcid":"https://orcid.org/0000-0002-4611-9205","observed_orcids":["https://orcid.org/0000-0002-4611-9205"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I4210100286","display_name":"Chan Zuckerberg Biohub San Francisco","ror":"https://ror.org/00knt4f32","country_code":"US","type":"facility","lineage":["https://openalex.org/I180670191","https://openalex.org/I4210100286","https://openalex.org/I4210121800","https://openalex.org/I95457486","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph L DeRisi","raw_affiliation_strings":["Chan Zuckerberg Biohub, San Francisco, CA 94158, USA","Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA\u00a094158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Biohub, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I4210100286"]},{"raw_affiliation_string":"Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA\u00a094158, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022467705","display_name":"Emily D. Crawford","orcid":"https://orcid.org/0000-0003-4182-2337","observed_orcids":["https://orcid.org/0000-0003-4182-2337"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I4210100286","display_name":"Chan Zuckerberg Biohub San Francisco","ror":"https://ror.org/00knt4f32","country_code":"US","type":"facility","lineage":["https://openalex.org/I180670191","https://openalex.org/I4210100286","https://openalex.org/I4210121800","https://openalex.org/I95457486","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Emily D Crawford","raw_affiliation_strings":["Chan Zuckerberg Biohub, San Francisco, CA 94158, USA","Department of Microbiology and Immunology, University of California San Francisco, San Francisco, CA 94158, USA"],"raw_orcid":"https://orcid.org/0000-0003-4182-2337","affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Biohub, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I4210100286"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, University of California San Francisco, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I180670191"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5022467705"],"corresponding_institution_ids":["https://openalex.org/I180670191","https://openalex.org/I4210100286"],"apc_list":{"value":3992,"currency":"USD","value_usd":3992},"apc_paid":{"value":3992,"currency":"USD","value_usd":3992},"fwci":9.1456,"has_fulltext":true,"cited_by_count":258,"citation_normalized_percentile":{"value":0.98994483,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"47","issue":"14","first_page":"e83","last_page":"e83"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9721999764442444,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9721999764442444,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11393","display_name":"Biosensors and Analytical Detection","score":0.004399999976158142,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.0020000000949949026,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antimicrobial-resistance-genes","display_name":"antimicrobial resistance genes","score":0.8730000257492065},{"id":"https://openalex.org/keywords/metagenomic-sequencing","display_name":"metagenomic sequencing","score":0.5820000171661377},{"id":"https://openalex.org/keywords/guide-rna-design","display_name":"guide RNA design","score":0.9010000228881836},{"id":"https://openalex.org/keywords/dried-blood-spots","display_name":"dried blood spots","score":0.9980000257492065},{"id":"https://openalex.org/keywords/multiplex-pcr","display_name":"multiplex PCR","score":0.7020000219345093},{"id":"https://openalex.org/keywords/multiplexed-detection","display_name":"multiplexed detection","score":0.4740000069141388}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9451122879981995},{"id":"https://openalex.org/C98108389","wikidata":"https://www.wikidata.org/wiki/Q412563","display_name":"CRISPR","level":3,"score":0.7574367523193359},{"id":"https://openalex.org/C2777526259","wikidata":"https://www.wikidata.org/wiki/Q221836","display_name":"Flash (photography)","level":2,"score":0.5638735890388489},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49955320358276367},{"id":"https://openalex.org/C94665300","wikidata":"https://www.wikidata.org/wiki/Q63391344","display_name":"Antibiotic resistance","level":3,"score":0.4410071074962616},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4289875626564026},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.2360658347606659},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1826942265033722},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D024881","descriptor_name":"Drug Resistance, Bacterial","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":true},{"descriptor_ui":"D024881","descriptor_name":"Drug Resistance, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gkz418","doi":"https://doi.org/10.1093/nar/gkz418","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz418","pdf_url":"https://academic.oup.com/nar/article-pdf/47/14/e83/29184794/gkz418.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"doi:10.1101/426338","doi":"https://doi.org/10.1101/426338","is_oa":true,"landing_page_url":"https://doi.org/10.1101/426338","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2019/05/12/426338.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmh:oai:pubmedcentral.nih.gov:6698650","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6698650","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmid:31114866","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31114866","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"Journal Article"},{"id":"pmh:oai:researchonline.lshtm.ac.uk:4666771","doi":null,"is_oa":false,"landing_page_url":"https://researchonline.lshtm.ac.uk/view/creators/lshrg11.html>;","pdf_url":null,"source":{"id":"https://openalex.org/S4306402527","display_name":"LSHTM Research Online (London School of Hygiene and Tropical Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210089966","host_organization_name":"London School of Hygiene & Tropical Medicine","host_organization_lineage":["https://openalex.org/I4210089966"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt5dj8h8nq","doi":null,"is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/5dj8h8nq","pdf_url":"https://escholarship.org/content/qt5dj8h8nq/qt5dj8h8nq.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, vol 47, iss 14","raw_type":"article"},{"id":"pmh:oai:repository.unam.edu.na:11070/2687","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/11070/2687","pdf_url":"http://hdl.handle.net/11070/2687","source":{"id":"https://openalex.org/S4377196611","display_name":"UNAM Scholarly Repository (University of Namibia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I217085601","host_organization_name":"University of Namibia","host_organization_lineage":["https://openalex.org/I217085601"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt5dj8h8nq","doi":null,"is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/5dj8h8nq","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic acids research, vol 47, iss 14","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz418","doi":"https://doi.org/10.1093/nar/gkz418","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz418","pdf_url":"https://academic.oup.com/nar/article-pdf/47/14/e83/29184794/gkz418.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.5683000087738037,"id":"https://metadata.un.org/sdg/3"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G3335243318","display_name":"ARDS Endotypes: Expanded Analysis of Clinical and Biological Phenotypes and Evolution Over Time","funder_award_id":"K24HL133390","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G4000727960","display_name":"Resource centre for genomic epidemiology of malaria.","funder_award_id":"090770","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G504283021","display_name":"The Microbiome, Virome and Host Responses Preceding Ventilator-Associated Pneumon","funder_award_id":"R01HL124103","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G749329918","display_name":"Precision Medicine in the Acute Respiratory Distress Syndrome","funder_award_id":"R35HL140026","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G7595298251","display_name":null,"funder_award_id":"C27552C-01-135119","funder_id":"https://openalex.org/F4320337659","funder_display_name":"Claude D. Pepper Older Americans Independence Center, University of California San Francisco"},{"id":"https://openalex.org/G8540099568","display_name":"Cigarette Smoke Exposure and Acute Lung Injury After Severe Blunt Trauma","funder_award_id":"R01HL110969","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G8666890344","display_name":"Wellcome Trust Sanger Institute - generic account for deposition of all core- funded research papers","funder_award_id":"098051","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G8763554137","display_name":"Profiling the Lung Transcriptome for Precision Diagnosis of Respiratory Infections using Host/Pathogen Metagenomic Sequencing","funder_award_id":"K23HL138461","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G9000860041","display_name":"Clinical Pharmacology, Drug Action and Pharmacogenetics","funder_award_id":"T32GM007546","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320315474","display_name":"Chan Zuckerberg Initiative","ror":"https://ror.org/02qenvm24"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337659","display_name":"Claude D. Pepper Older Americans Independence Center, University of California San Francisco","ror":"https://ror.org/043mz5j54"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2952835014.pdf","grobid_xml":"https://content.openalex.org/works/W2952835014.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1506494596","https://openalex.org/W1838568970","https://openalex.org/W1964931574","https://openalex.org/W1996639554","https://openalex.org/W2017422039","https://openalex.org/W2032866129","https://openalex.org/W2045435533","https://openalex.org/W2057436895","https://openalex.org/W2083280521","https://openalex.org/W2091490176","https://openalex.org/W2101134401","https://openalex.org/W2106780559","https://openalex.org/W2108234281","https://openalex.org/W2108981909","https://openalex.org/W2114539533","https://openalex.org/W2124648649","https://openalex.org/W2128880918","https://openalex.org/W2134852597","https://openalex.org/W2136430672","https://openalex.org/W2170551349","https://openalex.org/W2233603983","https://openalex.org/W2291953138","https://openalex.org/W2309804881","https://openalex.org/W2461013690","https://openalex.org/W2467614481","https://openalex.org/W2522085729","https://openalex.org/W2544493586","https://openalex.org/W2606915822","https://openalex.org/W2612451420","https://openalex.org/W2726960688","https://openalex.org/W2765137312","https://openalex.org/W2775244680","https://openalex.org/W2782551527","https://openalex.org/W2782741879","https://openalex.org/W2785904295","https://openalex.org/W2786619358","https://openalex.org/W2787024379","https://openalex.org/W2805442283","https://openalex.org/W2951816935"],"related_works":["https://openalex.org/W3170511581","https://openalex.org/W4226372101","https://openalex.org/W4411179749","https://openalex.org/W3041832074","https://openalex.org/W3162536431","https://openalex.org/W4407860844","https://openalex.org/W6904950669","https://openalex.org/W4306776622","https://openalex.org/W7134196929","https://openalex.org/W4392183869"],"abstract_inverted_index":{"The":[0],"growing":[1],"prevalence":[2],"of":[3,21,52,58,66,74,76,102],"deadly":[4],"microbes":[5],"with":[6,82],"resistance":[7,104],"to":[8,17,60,71,100,117],"previously":[9],"life-saving":[10],"drug":[11],"therapies":[12],"is":[13,115],"a":[14,27,44,63],"dire":[15],"threat":[16],"human":[18],"health.":[19],"Detection":[20],"low":[22],"abundance":[23],"pathogen":[24],"sequences":[25],"remains":[26],"challenge":[28],"for":[29,62,92],"metagenomic":[30],"Next":[31],"Generation":[32],"Sequencing":[33],"(NGS).":[34],"We":[35,85],"introduce":[36],"FLASH":[37],"(Finding":[38],"Low":[39],"Abundance":[40],"Sequences":[41],"by":[42],"Hybridization),":[43],"next-generation":[45],"CRISPR/Cas9":[46],"diagnostic":[47],"method":[48],"that":[49,120],"takes":[50],"advantage":[51],"the":[53],"efficiency,":[54],"specificity":[55],"and":[56,78,109],"flexibility":[57],"Cas9":[59],"enrich":[61],"programmed":[64],"set":[65],"sequences.":[67],"FLASH-NGS":[68,114],"achieves":[69],"up":[70],"5":[72],"orders":[73],"magnitude":[75],"enrichment":[77],"sub-attomolar":[79],"gene":[80],"detection":[81,101],"minimal":[83],"background.":[84],"provide":[86],"an":[87],"open-source":[88],"software":[89],"tool":[90],"(FLASHit)":[91],"guide":[93],"RNA":[94],"design.":[95],"Here":[96],"we":[97],"applied":[98],"it":[99],"antimicrobial":[103],"genes":[105],"in":[106],"respiratory":[107],"fluid":[108],"dried":[110],"blood":[111],"spots,":[112],"but":[113],"applicable":[116],"all":[118],"areas":[119],"rely":[121],"on":[122],"multiplex":[123],"PCR.":[124]},"counts_by_year":[{"year":2026,"cited_by_count":27},{"year":2025,"cited_by_count":32},{"year":2024,"cited_by_count":42},{"year":2023,"cited_by_count":34},{"year":2022,"cited_by_count":50},{"year":2021,"cited_by_count":32},{"year":2020,"cited_by_count":30},{"year":2019,"cited_by_count":11}],"updated_date":"2026-11-06T12:05:46.655746","created_date":"2019-06-27T00:00:00"}
