{"id":"https://openalex.org/W2944820104","doi":"https://doi.org/10.1111/1462-2920.14679","title":"\u03c3 54 \u2010Dependent regulator DVU2956 switches Desulfovibrio vulgaris from biofilm formation to planktonic growth and regulates hydrogen sulfide production","display_name":"\u03c3 54 \u2010Dependent regulator DVU2956 switches Desulfovibrio vulgaris from biofilm formation to planktonic growth and regulates hydrogen sulfide production","publication_year":2019,"publication_date":"2019-05-14","ids":{"openalex":"https://openalex.org/W2944820104","doi":"https://doi.org/10.1111/1462-2920.14679","mag":"2944820104","pmid":"https://pubmed.ncbi.nlm.nih.gov/31087603"},"language":"en","primary_location":{"id":"doi:10.1111/1462-2920.14679","doi":"https://doi.org/10.1111/1462-2920.14679","is_oa":false,"landing_page_url":"https://doi.org/10.1111/1462-2920.14679","pdf_url":null,"source":{"id":"https://openalex.org/S6919857","display_name":"Environmental Microbiology","issn_l":"1462-2912","issn":["1462-2912","1462-2920"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Environmental Microbiology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062751124","display_name":"Lei Zhu","orcid":"https://orcid.org/0000-0002-1800-4769","observed_orcids":["https://orcid.org/0000-0002-1800-4769"]},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lei Zhu","raw_affiliation_strings":["Department of Chemical Engineering, Pennsylvania State University, University Park, State College, PA, 16802 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, Pennsylvania State University, University Park, State College, PA, 16802 USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029571869","display_name":"Ting Gong","orcid":"https://orcid.org/0000-0001-8877-9482","observed_orcids":["https://orcid.org/0000-0001-8877-9482"]},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ting Gong","raw_affiliation_strings":["Department of Chemical Engineering, Pennsylvania State University, University Park, State College, PA, 16802 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, Pennsylvania State University, University Park, State College, PA, 16802 USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103640356","display_name":"Thammajun L. Wood","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thammajun L. Wood","raw_affiliation_strings":["Department of Chemical Engineering, Pennsylvania State University, University Park, State College, PA, 16802 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, Pennsylvania State University, University Park, State College, PA, 16802 USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083551889","display_name":"Ryota Yamasaki","orcid":"https://orcid.org/0000-0003-1152-3248","observed_orcids":["https://orcid.org/0000-0003-1152-3248"]},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ryota Yamasaki","raw_affiliation_strings":["Department of Chemical Engineering, Pennsylvania State University, University Park, State College, PA, 16802 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, Pennsylvania State University, University Park, State College, PA, 16802 USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082173877","display_name":"Thomas Keith Wood","orcid":"https://orcid.org/0000-0002-6258-529X","observed_orcids":["https://orcid.org/0000-0002-6258-529X"]},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Thomas K. Wood","raw_affiliation_strings":["Department of Chemical Engineering, Pennsylvania State University, University Park, State College, PA, 16802 USA"],"raw_orcid":"https://orcid.org/0000-0002-6258-529X","affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, Pennsylvania State University, University Park, State College, PA, 16802 USA","institution_ids":["https://openalex.org/I130769515"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5082173877"],"corresponding_institution_ids":["https://openalex.org/I130769515"],"apc_list":{"value":4200,"currency":"USD","value_usd":4200},"apc_paid":null,"fwci":1.2452,"has_fulltext":false,"cited_by_count":24,"citation_normalized_percentile":{"value":0.77857102,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"21","issue":"10","first_page":"3564","last_page":"3576"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.9345999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.9345999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10310","display_name":"Corrosion Behavior and Inhibition","score":0.014499999582767487,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.013700000010430813,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/desulfovibrio-vulgaris","display_name":"Desulfovibrio vulgaris","score":0.9589999914169312},{"id":"https://openalex.org/keywords/biofilm-formation","display_name":"biofilm formation","score":0.9620000123977661},{"id":"https://openalex.org/keywords/planktonic-growth","display_name":"planktonic growth","score":0.9959999918937683},{"id":"https://openalex.org/keywords/hydrogen-sulfide-production","display_name":"hydrogen sulfide production","score":0.9829999804496765},{"id":"https://openalex.org/keywords/sulfate-reducing-bacteria","display_name":"sulfate-reducing bacteria","score":0.9900000095367432},{"id":"https://openalex.org/keywords/microbiologically-influenced-corrosion","display_name":"microbiologically influenced corrosion","score":0.9449999928474426},{"id":"https://openalex.org/keywords/cytochrome-c","display_name":"cytochrome c","score":0.8009999990463257},{"id":"https://openalex.org/keywords/fefe-hydrogenase","display_name":"[FeFe]-hydrogenase","score":0.984000027179718},{"id":"https://openalex.org/keywords/gene-expression-regulation","display_name":"gene expression regulation","score":0.7229999899864197},{"id":"https://openalex.org/keywords/transcriptome","display_name":"transcriptome","score":0.640999972820282}],"concepts":[{"id":"https://openalex.org/C58123911","wikidata":"https://www.wikidata.org/wiki/Q467410","display_name":"Biofilm","level":3,"score":0.9809432625770569},{"id":"https://openalex.org/C2781243026","wikidata":"https://www.wikidata.org/wiki/Q593811","display_name":"Desulfovibrio vulgaris","level":3,"score":0.9320375919342041},{"id":"https://openalex.org/C79115784","wikidata":"https://www.wikidata.org/wiki/Q424135","display_name":"Hydrogenase","level":3,"score":0.7805805206298828},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7719130516052246},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.7004773616790771},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.5973032712936401},{"id":"https://openalex.org/C2777107655","wikidata":"https://www.wikidata.org/wiki/Q15846377","display_name":"Desulfovibrio","level":3,"score":0.5526773929595947},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15427345037460327}],"mesh":[{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004579","descriptor_name":"Electron Transport","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006862","descriptor_name":"Hydrogen Sulfide","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016969","descriptor_name":"Desulfovibrio vulgaris","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016969","descriptor_name":"Desulfovibrio vulgaris","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018441","descriptor_name":"Biofilms","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1111/1462-2920.14679","doi":"https://doi.org/10.1111/1462-2920.14679","is_oa":false,"landing_page_url":"https://doi.org/10.1111/1462-2920.14679","pdf_url":null,"source":{"id":"https://openalex.org/S6919857","display_name":"Environmental Microbiology","issn_l":"1462-2912","issn":["1462-2912","1462-2920"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Environmental Microbiology","raw_type":"journal-article"},{"id":"pmid:31087603","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31087603","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Environmental microbiology","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320307783","display_name":"Dow Chemical Company","ror":"https://ror.org/032hx4q18"},{"id":"https://openalex.org/F4320310419","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W1443021588","https://openalex.org/W1584551792","https://openalex.org/W1976317980","https://openalex.org/W1999046178","https://openalex.org/W2006909053","https://openalex.org/W2017130803","https://openalex.org/W2050372711","https://openalex.org/W2053302061","https://openalex.org/W2065663947","https://openalex.org/W2068038054","https://openalex.org/W2096474778","https://openalex.org/W2101870905","https://openalex.org/W2104718617","https://openalex.org/W2122023734","https://openalex.org/W2126257017","https://openalex.org/W2137015675","https://openalex.org/W2142791144","https://openalex.org/W2146083096","https://openalex.org/W2146238914","https://openalex.org/W2156662689","https://openalex.org/W2158340748","https://openalex.org/W2160405880","https://openalex.org/W2162386520","https://openalex.org/W2164368007","https://openalex.org/W2168370822","https://openalex.org/W2754305293","https://openalex.org/W2792369013","https://openalex.org/W2799524357","https://openalex.org/W6719529052"],"related_works":["https://openalex.org/W7015947592","https://openalex.org/W2050372711","https://openalex.org/W2343751765","https://openalex.org/W4317565073","https://openalex.org/W2158340748","https://openalex.org/W3210858440","https://openalex.org/W4388923607","https://openalex.org/W2980748005","https://openalex.org/W2008798676","https://openalex.org/W2563365982"],"abstract_inverted_index":{"Summary":[0],"Microbiologically":[1],"influenced":[2],"corrosion":[3],"causes":[4],"$100":[5],"billion":[6],"in":[7,63,73,106,177,200,213],"damage":[8],"per":[9],"year,":[10],"and":[11,47,50,96,115,152,161,197,217],"biofilms":[12,74,107,178],"formed":[13],"by":[14,86,111,147,157,184,193],"sulfate\u2010reducing":[15],"bacteria":[16],"(SRB)":[17],"are":[18],"the":[19,27,43,53,130,153,201,214],"major":[20],"culprit.":[21],"However,":[22],"little":[23],"is":[24,61,70],"known":[25],"about":[26],"regulation":[28],"of":[29,45,81,127,132],"SRB":[30,39,212],"biofilm":[31,46,84,94,98,118],"formation.":[32,222],"Using":[33],"Desulfovibrio":[34],"vulgaris":[35],"as":[36],"a":[37,66],"model":[38],"organism,":[40],"we":[41,78],"compared":[42],"transcriptomes":[44],"planktonic":[48,215],"cells":[49],"identified":[51],"that":[52,69],"gene":[54],"for":[55,129],"\u03c3":[56],"54":[57],"\u2010dependent":[58],"regulator":[59],"DVU2956":[60,82,112,133,135,176,199,210],"repressed":[62],"biofilms.":[64],"Utilizing":[65],"novel":[67],"promoter":[68],"primarily":[71],"transcribed":[72],"(P":[75],"dvu0304":[76],"),":[77,117],"found":[79],"production":[80,131,183,192],"inhibits":[83],"formation":[85,119],"70%.":[87],"Corroborating":[88,172],"this":[89,97],"result,":[90],"deleting":[91,186],"dvu2956":[92,187,202],"increased":[93,188],"formation,":[95],"phenotype":[99],"could":[100],"be":[101],"complemented.":[102],"By":[103],"producing":[104,175,198],"proteins":[105],"from":[108],"genes":[109],"controlled":[110],"(":[113],"dvu2960":[114],"dvu2962":[116],"was":[120],"inhibited":[121],"almost":[122],"completely.":[123],"A":[124],"second":[125],"round":[126],"RNA\u2010seq":[128],"revealed":[134],"influences":[136],"electron":[137],"transport":[138],"via":[139],"an":[140],"Hmc":[141],"complex":[142],"(high\u2010molecular\u2010weight":[143],"cytochrome":[144],"c":[145],"encoded":[146],"dvu0531":[148],"\u2013":[149],"dvu0536":[150],")":[151,165],"Fe\u2010only":[154],"hydrogenase":[155],"(encoded":[156],"dvu1769":[158],",":[159,163],"hydA":[160],"dvu1770":[162],"hydB":[164],"to":[166],"control":[167],"H":[168,180,189,205,219],"2":[169,181,190,206,220],"S":[170,182,191,207,221],"production.":[171,208],"these":[173],"results,":[174],"decreased":[179],"half,":[185],"131":[194],"\u00b1":[195],"5%,":[196],"strain":[203],"reduced":[204],"Therefore,":[209],"maintains":[211],"state":[216],"reduces":[218]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2019-05-29T00:00:00"}
