{"id":"https://openalex.org/W2944758129","doi":"https://doi.org/10.1109/aipr.2018.8707387","title":"Patch-Based Semantic Segmentation for Detecting Arterioles and Venules in Epifluorescence Imagery","display_name":"Patch-Based Semantic Segmentation for Detecting Arterioles and Venules in Epifluorescence Imagery","publication_year":2018,"publication_date":"2018-10-01","ids":{"openalex":"https://openalex.org/W2944758129","doi":"https://doi.org/10.1109/aipr.2018.8707387","mag":"2944758129","pmid":"https://pubmed.ncbi.nlm.nih.gov/32123642","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/7050272"},"language":"en","primary_location":{"id":"doi:10.1109/aipr.2018.8707387","doi":"https://doi.org/10.1109/aipr.2018.8707387","is_oa":false,"landing_page_url":"https://doi.org/10.1109/aipr.2018.8707387","pdf_url":null,"source":{"id":"https://openalex.org/S4393918249","display_name":"IEEE Applied Imagery Pattern Recognition Workshop","issn_l":"2164-2516","issn":["2164-2516"],"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":["norway-1"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE Applied Imagery Pattern Recognition Workshop (AIPR)","raw_type":"proceedings-article"},"volume":null,"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7050272","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049242522","display_name":"Yasmin M. Kassim","orcid":"https://orcid.org/0000-0001-5339-8081","observed_orcids":["https://orcid.org/0000-0001-5339-8081"]},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yasmin M. Kassim","raw_affiliation_strings":["Computational Imaging and VisAnalysis (CIVA) Lab, Department of Electrical Engineering and Computer Science, University of Missouri-Columbia, Columbia, MO 65211 USA","Computational Imaging and VisAnalysis (CIVA) Lab, University of Missouri-Columbia, Columbia, MO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Imaging and VisAnalysis (CIVA) Lab, Department of Electrical Engineering and Computer Science, University of Missouri-Columbia, Columbia, MO 65211 USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Computational Imaging and VisAnalysis (CIVA) Lab, University of Missouri-Columbia, Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049385022","display_name":"Olga V. Glinskii","orcid":"https://orcid.org/0000-0002-8302-0597","observed_orcids":["https://orcid.org/0000-0002-8302-0597"]},"institutions":[{"id":"https://openalex.org/I4210107726","display_name":"Harry S. Truman Memorial Veterans' Hospital","ror":"https://ror.org/01a4gqp27","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210107726","https://openalex.org/I4210165236"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Olga V. Glinskii","raw_affiliation_strings":["Department of Medical Pharmacology and Physiology, University of Missouri-Columbia, Columbia, MO 65211 USA","Research Service, Harry S. Truman Memorial Veterans Hospital, Columbia, MO 65201 USA","Research Service, Harry S. Truman Memorial Veterans Hospital, Columbia, MO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Pharmacology and Physiology, University of Missouri-Columbia, Columbia, MO 65211 USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Research Service, Harry S. Truman Memorial Veterans Hospital, Columbia, MO 65201 USA","institution_ids":["https://openalex.org/I4210107726"]},{"raw_affiliation_string":"Research Service, Harry S. Truman Memorial Veterans Hospital, Columbia, MO, USA","institution_ids":["https://openalex.org/I4210107726"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059418355","display_name":"Vladislav V. Glinsky","orcid":"https://orcid.org/0000-0003-0893-4388","observed_orcids":["https://orcid.org/0000-0003-0893-4388"]},"institutions":[{"id":"https://openalex.org/I4210107726","display_name":"Harry S. Truman Memorial Veterans' Hospital","ror":"https://ror.org/01a4gqp27","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210107726","https://openalex.org/I4210165236"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vladislav V. Glinsky","raw_affiliation_strings":["Department of Pathology and Anatomical Sciences, University of Missouri-Columbia, Columbia, MO 65211 USA","Research Service, Harry S. Truman Memorial Veterans Hospital, Columbia, MO 65201 USA","Research Service, Harry S. Truman Memorial Veterans Hospital, Columbia, MO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Anatomical Sciences, University of Missouri-Columbia, Columbia, MO 65211 USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Research Service, Harry S. Truman Memorial Veterans Hospital, Columbia, MO 65201 USA","institution_ids":["https://openalex.org/I4210107726"]},{"raw_affiliation_string":"Research Service, Harry S. Truman Memorial Veterans Hospital, Columbia, MO, USA","institution_ids":["https://openalex.org/I4210107726"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051795581","display_name":"Virginia H. Huxley","orcid":"https://orcid.org/0000-0001-6304-1617","observed_orcids":["https://orcid.org/0000-0001-6304-1617"]},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Virginia H. Huxley","raw_affiliation_strings":["Department of Medical Pharmacology and Physiology, University of Missouri-Columbia, Columbia, MO 65211 USA","National Center for Gender Physiology, University of Missouri-Columbia, MO 65211 USA","National Center for Gender Physiology, University of Missouri-Columbia, MO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Pharmacology and Physiology, University of Missouri-Columbia, Columbia, MO 65211 USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"National Center for Gender Physiology, University of Missouri-Columbia, MO 65211 USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"National Center for Gender Physiology, University of Missouri-Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025286899","display_name":"Kannappan Palaniappan","orcid":"https://orcid.org/0000-0003-2663-1380","observed_orcids":["https://orcid.org/0000-0003-2663-1380"]},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kannappan Palaniappan","raw_affiliation_strings":["Computational Imaging and VisAnalysis (CIVA) Lab, Department of Electrical Engineering and Computer Science, University of Missouri-Columbia, Columbia, MO 65211 USA","Computational Imaging and VisAnalysis (CIVA) Lab, University of Missouri-Columbia, Columbia, MO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Imaging and VisAnalysis (CIVA) Lab, Department of Electrical Engineering and Computer Science, University of Missouri-Columbia, Columbia, MO 65211 USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Computational Imaging and VisAnalysis (CIVA) Lab, University of Missouri-Columbia, Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0754,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.4550574,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":94},"biblio":{"volume":"2018","issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.5717999935150146,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.5717999935150146,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11438","display_name":"Retinal Imaging and Analysis","score":0.2142000049352646,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.19249999523162842,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/semantic-segmentation","display_name":"semantic segmentation","score":0.6759999990463257},{"id":"https://openalex.org/keywords/microcirculation","display_name":"microcirculation","score":0.7889999747276306},{"id":"https://openalex.org/keywords/epifluorescence-microscopy","display_name":"epifluorescence microscopy","score":0.9309999942779541},{"id":"https://openalex.org/keywords/patch-based-training","display_name":"patch-based training","score":0.7480000257492065},{"id":"https://openalex.org/keywords/vessel-segmentation","display_name":"vessel segmentation","score":0.7409999966621399},{"id":"https://openalex.org/keywords/dura-mater","display_name":"dura mater","score":0.8190000057220459},{"id":"https://openalex.org/keywords/ovariectomized-mice","display_name":"ovariectomized mice","score":0.8180000185966492}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.774999737739563},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6781206727027893},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6691988706588745},{"id":"https://openalex.org/C191178318","wikidata":"https://www.wikidata.org/wiki/Q2256906","display_name":"Thresholding","level":3,"score":0.6357789039611816},{"id":"https://openalex.org/C2778672379","wikidata":"https://www.wikidata.org/wiki/Q388209","display_name":"Venule","level":3,"score":0.5717806220054626},{"id":"https://openalex.org/C160633673","wikidata":"https://www.wikidata.org/wiki/Q355198","display_name":"Pixel","level":2,"score":0.5619619488716125},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5415807366371155},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.4605369567871094},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4528062343597412},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.2518942058086395},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1565638780593872},{"id":"https://openalex.org/C2776992346","wikidata":"https://www.wikidata.org/wiki/Q111140","display_name":"Endothelium","level":2,"score":0.0},{"id":"https://openalex.org/C134018914","wikidata":"https://www.wikidata.org/wiki/Q162606","display_name":"Endocrinology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/aipr.2018.8707387","doi":"https://doi.org/10.1109/aipr.2018.8707387","is_oa":false,"landing_page_url":"https://doi.org/10.1109/aipr.2018.8707387","pdf_url":null,"source":{"id":"https://openalex.org/S4393918249","display_name":"IEEE Applied Imagery Pattern Recognition Workshop","issn_l":"2164-2516","issn":["2164-2516"],"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":["norway-1"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE Applied Imagery Pattern Recognition Workshop (AIPR)","raw_type":"proceedings-article"},{"id":"pmid:32123642","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32123642","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Applied Imagery Pattern Recognition Workshop : [proceedings]. IEEE Applied Imagery Pattern Recognition Workshop","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7050272","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7050272","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"IEEE Appl Imag Pattern Recognit Workshop","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:7050272","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7050272","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"IEEE Appl Imag Pattern Recognit Workshop","raw_type":"Text"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G3596913693","display_name":"Intravascular Integrin - Mediated Steps in Breast Cancer Metastasis","funder_award_id":"R01CA160461","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G4208131537","display_name":"Quantitative analysis of estrogen and sleep deprivation-induced blood and lymphatic vascular remodeling in the brain system","funder_award_id":"R01NS110915","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G4754545027","display_name":"Quantifying deformable motion in growth and motility","funder_award_id":"R33EB000573","funder_id":"https://openalex.org/F4320337363","funder_display_name":"National Institute of Biomedical Imaging and Bioengineering"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320326118","display_name":"Higher Committee for Education Development in Iraq","ror":"https://ror.org/00wnaaa58"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"},{"id":"https://openalex.org/F4320337363","display_name":"National Institute of Biomedical Imaging and Bioengineering","ror":"https://ror.org/00372qc85"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W22040386","https://openalex.org/W1832101600","https://openalex.org/W1901129140","https://openalex.org/W1963882359","https://openalex.org/W2004210288","https://openalex.org/W2121913681","https://openalex.org/W2129534965","https://openalex.org/W2133059825","https://openalex.org/W2166524747","https://openalex.org/W2253429366","https://openalex.org/W2327793514","https://openalex.org/W2345010043","https://openalex.org/W2419518659","https://openalex.org/W2513326255","https://openalex.org/W2535178496","https://openalex.org/W2608981967","https://openalex.org/W2739818038","https://openalex.org/W2748331870","https://openalex.org/W2755659513","https://openalex.org/W2772318883","https://openalex.org/W2775688034","https://openalex.org/W2806195292","https://openalex.org/W2898714616"],"related_works":["https://openalex.org/W2755659513","https://openalex.org/W2141932985","https://openalex.org/W2535178496","https://openalex.org/W7131082285","https://openalex.org/W4285347579","https://openalex.org/W6921028715","https://openalex.org/W1969736860","https://openalex.org/W7160896115","https://openalex.org/W2084343208","https://openalex.org/W7164066489"],"abstract_inverted_index":{"Segmentation":[0],"and":[1,85,115,135],"quantification":[2],"of":[3,64,90,138],"microvasculature":[4,12],"structures":[5],"are":[6],"the":[7,24,61,65,69,74,82,88,139,151],"main":[8],"steps":[9],"toward":[10],"studying":[11],"remodeling.":[13],"The":[14,52],"proposed":[15,53],"patch":[16],"based":[17,132],"semantic":[18,32,54],"architecture":[19],"enables":[20],"accurate":[21],"segmentation":[22,124],"for":[23],"challenging":[25],"epifluorescence":[26,40,106],"microscopy":[27,107],"images.":[28],"Our":[29,144],"pixel-based":[30],"fast":[31],"network":[33,56],"trained":[34],"on":[35,59,95],"random":[36],"patches":[37,70],"from":[38],"different":[39,123],"images":[41,108],"to":[42,45,79,86],"learn":[43],"how":[44],"discriminate":[46],"between":[47],"vessels":[48,67],"versus":[49],"nonvessels":[50],"pixels.":[51],"vessel":[55],"(SVNet)":[57],"relies":[58],"understanding":[60],"morphological":[62],"structure":[63],"thin":[66,91],"in":[68,112],"rather":[71],"than":[72],"considering":[73],"whole":[75],"image":[76],"as":[77,127],"input":[78],"speed":[80],"up":[81],"training":[83],"process":[84],"maintain":[87],"clarity":[89],"structures.":[92],"Experimental":[93],"results":[94,111,121],"our":[96,120,154],"ovariectomized":[97],"-":[98,102],"ovary":[99],"removed":[100],"(OVX)":[101],"mice":[103],"dura":[104],"mater":[105],"shows":[109],"promising":[110],"both":[113],"arteriole":[114],"venule":[116],"part.":[117],"We":[118],"compared":[119],"with":[122],"methods":[125,152],"such":[126],"local,":[128],"global":[129],"thresholding,":[130],"matched":[131],"filter":[133],"approaches":[134],"related":[136],"state":[137],"art":[140],"deep":[141],"learning":[142],"networks.":[143],"overall":[145],"accuracy":[146],"(>":[147],"98%)":[148],"outperforms":[149],"all":[150],"including":[153],"previous":[155],"work":[156],"(VNet).":[157],"[1].":[158]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-10-30T12:39:25.321706","created_date":"2019-05-16T00:00:00"}