{"id":"https://openalex.org/W2944121997","doi":"https://doi.org/10.1016/j.jgar.2019.04.020","title":"Distribution of antimicrobial resistance genes and integrons among Shigella spp. isolated from water sources","display_name":"Distribution of antimicrobial resistance genes and integrons among Shigella spp. isolated from water sources","publication_year":2019,"publication_date":"2019-05-09","ids":{"openalex":"https://openalex.org/W2944121997","doi":"https://doi.org/10.1016/j.jgar.2019.04.020","mag":"2944121997","pmid":"https://pubmed.ncbi.nlm.nih.gov/31077861"},"language":"en","primary_location":{"id":"doi:10.1016/j.jgar.2019.04.020","doi":"https://doi.org/10.1016/j.jgar.2019.04.020","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.jgar.2019.04.020","pdf_url":null,"source":{"id":"https://openalex.org/S2764745279","display_name":"Journal of Global Antimicrobial Resistance","issn_l":"2213-7165","issn":["2213-7165","2213-7173"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-40","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Global Antimicrobial Resistance","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075622424","display_name":"Khashayar Shahin","orcid":"https://orcid.org/0000-0001-5994-1954","observed_orcids":["https://orcid.org/0000-0001-5994-1954"]},"institutions":[{"id":"https://openalex.org/I39268498","display_name":"University of Isfahan","ror":"https://ror.org/05h9t7759","country_code":"IR","type":"education","lineage":["https://openalex.org/I39268498"]},{"id":"https://openalex.org/I4210087107","display_name":"Jiangsu Academy of Agricultural Sciences","ror":"https://ror.org/001f9e125","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210087107"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Khashayar Shahin","raw_affiliation_strings":["Department of Biology, Faculty of Sciences, University of Isfahan, Isfahan, Iran; State Key Laboratory Cultivation Base of MOST, Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, Nanjing, PR China","Department of Biology, Faculty of Sciences, University of Isfahan, Isfahan, Iran","State Key Laboratory Cultivation Base of MOST, Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, Nanjing, PR China"],"raw_orcid":"https://orcid.org/0000-0001-5994-1954","affiliations":[{"raw_affiliation_string":"Department of Biology, Faculty of Sciences, University of Isfahan, Isfahan, Iran; State Key Laboratory Cultivation Base of MOST, Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, Nanjing, PR China","institution_ids":["https://openalex.org/I39268498","https://openalex.org/I4210087107"]},{"raw_affiliation_string":"Department of Biology, Faculty of Sciences, University of Isfahan, Isfahan, Iran","institution_ids":["https://openalex.org/I39268498"]},{"raw_affiliation_string":"State Key Laboratory Cultivation Base of MOST, Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, Nanjing, PR China","institution_ids":["https://openalex.org/I4210087107"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086426744","display_name":"Majid Bouzari","orcid":"https://orcid.org/0000-0002-2716-4692","observed_orcids":["https://orcid.org/0000-0002-2716-4692"]},"institutions":[{"id":"https://openalex.org/I39268498","display_name":"University of Isfahan","ror":"https://ror.org/05h9t7759","country_code":"IR","type":"education","lineage":["https://openalex.org/I39268498"]}],"countries":["IR"],"is_corresponding":true,"raw_author_name":"Majid Bouzari","raw_affiliation_strings":["Department of Biology, Faculty of Sciences, University of Isfahan, Isfahan, Iran. Electronic address: bouzari@sci.ui.ac.ir","Department of Biology, Faculty of Sciences, University of Isfahan, Isfahan, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Faculty of Sciences, University of Isfahan, Isfahan, Iran. Electronic address: bouzari@sci.ui.ac.ir","institution_ids":["https://openalex.org/I39268498"]},{"raw_affiliation_string":"Department of Biology, Faculty of Sciences, University of Isfahan, Isfahan, Iran","institution_ids":["https://openalex.org/I39268498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100447530","display_name":"Ran Wang","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210087107","display_name":"Jiangsu Academy of Agricultural Sciences","ror":"https://ror.org/001f9e125","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210087107"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ran Wang","raw_affiliation_strings":["State Key Laboratory Cultivation Base of MOST, Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, Nanjing, PR China. Electronic address: ranwang@jaas.ac.cn","State Key Laboratory Cultivation Base of MOST, Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, Nanjing, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory Cultivation Base of MOST, Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, Nanjing, PR China. Electronic address: ranwang@jaas.ac.cn","institution_ids":["https://openalex.org/I4210087107"]},{"raw_affiliation_string":"State Key Laboratory Cultivation Base of MOST, Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, Nanjing, PR China","institution_ids":["https://openalex.org/I4210087107"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071388806","display_name":"Mohammad Rabbani Khorasgani","orcid":"https://orcid.org/0000-0002-4043-9216","observed_orcids":["https://orcid.org/0000-0002-4043-9216"]},"institutions":[{"id":"https://openalex.org/I39268498","display_name":"University of Isfahan","ror":"https://ror.org/05h9t7759","country_code":"IR","type":"education","lineage":["https://openalex.org/I39268498"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Mohammad Rabbani Khorasgani","raw_affiliation_strings":["Department of Biology, Faculty of Sciences, University of Isfahan, Isfahan, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Faculty of Sciences, University of Isfahan, Isfahan, Iran","institution_ids":["https://openalex.org/I39268498"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5086426744","https://openalex.org/A5100447530"],"corresponding_institution_ids":["https://openalex.org/I39268498","https://openalex.org/I4210087107"],"apc_list":{"value":2500,"currency":"USD","value_usd":2500},"apc_paid":null,"fwci":1.427,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.77591502,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":98},"biblio":{"volume":"19","issue":null,"first_page":"122","last_page":"128"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.9643999934196472,"subfield":{"id":"https://openalex.org/subfields/2726","display_name":"Microbiology (medical)"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.9643999934196472,"subfield":{"id":"https://openalex.org/subfields/2726","display_name":"Microbiology (medical)"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10419","display_name":"Pharmaceutical and Antibiotic Environmental Impacts","score":0.022600000724196434,"subfield":{"id":"https://openalex.org/subfields/2310","display_name":"Pollution"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10486","display_name":"Salmonella and Campylobacter epidemiology","score":0.00559999980032444,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/shigella","display_name":"Shigella","score":0.9629999995231628},{"id":"https://openalex.org/keywords/antimicrobial-resistance-genes","display_name":"antimicrobial resistance genes","score":0.968999981880188},{"id":"https://openalex.org/keywords/integrons","display_name":"integrons","score":0.9700000286102295},{"id":"https://openalex.org/keywords/class-1-integron","display_name":"class 1 integron","score":0.8040000200271606},{"id":"https://openalex.org/keywords/class-2-integron","display_name":"class 2 integron","score":0.9990000128746033},{"id":"https://openalex.org/keywords/waterborne-pathogens","display_name":"waterborne pathogens","score":0.7350000143051147},{"id":"https://openalex.org/keywords/water-sources","display_name":"water sources","score":0.628000020980835},{"id":"https://openalex.org/keywords/multidrug-resistance","display_name":"multidrug resistance","score":0.7749999761581421},{"id":"https://openalex.org/keywords/plasmid-mediated-quinolone-resistance","display_name":"plasmid-mediated quinolone resistance","score":0.8799999952316284},{"id":"https://openalex.org/keywords/tetracycline-resistance","display_name":"tetracycline resistance","score":0.9660000205039978},{"id":"https://openalex.org/keywords/beta-lactam-resistance","display_name":"beta-lactam resistance","score":0.9110000133514404},{"id":"https://openalex.org/keywords/shigella-sonnei","display_name":"Shigella sonnei","score":0.9570000171661377},{"id":"https://openalex.org/keywords/shigella-flexneri","display_name":"Shigella flexneri","score":0.9980000257492065},{"id":"https://openalex.org/keywords/gene-cassettes","display_name":"gene cassettes","score":0.7609999775886536},{"id":"https://openalex.org/keywords/iran","display_name":"Iran","score":0.7440000176429749}],"concepts":[{"id":"https://openalex.org/C2776986154","wikidata":"https://www.wikidata.org/wiki/Q131029","display_name":"Shigella","level":4,"score":0.8772345781326294},{"id":"https://openalex.org/C2781217973","wikidata":"https://www.wikidata.org/wiki/Q1644417","display_name":"Shigella flexneri","level":4,"score":0.7839474081993103},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7784548997879028},{"id":"https://openalex.org/C2776650774","wikidata":"https://www.wikidata.org/wiki/Q420197","display_name":"Integron","level":4,"score":0.7420518398284912},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.7223286628723145},{"id":"https://openalex.org/C2780923616","wikidata":"https://www.wikidata.org/wiki/Q193045","display_name":"Tetracycline","level":3,"score":0.6730886101722717},{"id":"https://openalex.org/C2911111840","wikidata":"https://www.wikidata.org/wiki/Q6382438","display_name":"Shigella sonnei","level":5,"score":0.5918978452682495},{"id":"https://openalex.org/C94665300","wikidata":"https://www.wikidata.org/wiki/Q63391344","display_name":"Antibiotic resistance","level":3,"score":0.5797238945960999},{"id":"https://openalex.org/C10147152","wikidata":"https://www.wikidata.org/wiki/Q5413339","display_name":"Gene cassette","level":5,"score":0.5792648792266846},{"id":"https://openalex.org/C133936738","wikidata":"https://www.wikidata.org/wiki/Q643839","display_name":"Multiple drug resistance","level":3,"score":0.5252529978752136},{"id":"https://openalex.org/C4937899","wikidata":"https://www.wikidata.org/wiki/Q68541106","display_name":"Antimicrobial","level":2,"score":0.5070297718048096},{"id":"https://openalex.org/C114851261","wikidata":"https://www.wikidata.org/wiki/Q12147416","display_name":"Drug resistance","level":2,"score":0.33974379301071167},{"id":"https://openalex.org/C2781065037","wikidata":"https://www.wikidata.org/wiki/Q150839","display_name":"Salmonella","level":3,"score":0.3293999433517456},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3145173192024231},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29778993129730225},{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.22669851779937744},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.12435311079025269},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.12334281206130981}],"mesh":[{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001618","descriptor_name":"beta-Lactamases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012760","descriptor_name":"Shigella","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D012760","descriptor_name":"Shigella","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D012760","descriptor_name":"Shigella","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012760","descriptor_name":"Shigella","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D012763","descriptor_name":"Shigella flexneri","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D012763","descriptor_name":"Shigella flexneri","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012763","descriptor_name":"Shigella flexneri","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D012764","descriptor_name":"Shigella sonnei","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D012764","descriptor_name":"Shigella sonnei","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012764","descriptor_name":"Shigella sonnei","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D013754","descriptor_name":"Tetracyclines","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D014867","descriptor_name":"Water","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014871","descriptor_name":"Water Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015363","descriptor_name":"Quinolones","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D015995","descriptor_name":"Prevalence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D024901","descriptor_name":"Drug Resistance, Multiple, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D032023","descriptor_name":"Integrons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.jgar.2019.04.020","doi":"https://doi.org/10.1016/j.jgar.2019.04.020","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.jgar.2019.04.020","pdf_url":null,"source":{"id":"https://openalex.org/S2764745279","display_name":"Journal of Global Antimicrobial Resistance","issn_l":"2213-7165","issn":["2213-7165","2213-7173"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-40","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Global Antimicrobial Resistance","raw_type":"journal-article"},{"id":"pmid:31077861","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31077861","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of global antimicrobial resistance","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.9391000270843506,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"},{"score":0.6618000268936157,"id":"https://metadata.un.org/sdg/6","display_name":"Clean water and sanitation"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G6980920084","display_name":null,"funder_award_id":"A/94/32650","funder_id":"https://openalex.org/F4320324152","funder_display_name":"University of Isfahan"}],"funders":[{"id":"https://openalex.org/F4320324152","display_name":"University of Isfahan","ror":"https://ror.org/05h9t7759"},{"id":"https://openalex.org/F4320327600","display_name":"Jiangsu Agricultural Science and Technology Independent Innovation Fund","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W807085953","https://openalex.org/W1615325312","https://openalex.org/W1984597541","https://openalex.org/W1989110363","https://openalex.org/W2021663263","https://openalex.org/W2035442628","https://openalex.org/W2039085624","https://openalex.org/W2060516990","https://openalex.org/W2066636906","https://openalex.org/W2067428014","https://openalex.org/W2069117810","https://openalex.org/W2086487940","https://openalex.org/W2089865271","https://openalex.org/W2096208886","https://openalex.org/W2101156329","https://openalex.org/W2109501525","https://openalex.org/W2116865599","https://openalex.org/W2123991121","https://openalex.org/W2137695414","https://openalex.org/W2165991316","https://openalex.org/W2221542435","https://openalex.org/W2261524814","https://openalex.org/W2289302247","https://openalex.org/W2293868048","https://openalex.org/W2419345828","https://openalex.org/W2523381990","https://openalex.org/W2539150468","https://openalex.org/W2626463301","https://openalex.org/W2752655355","https://openalex.org/W2760952399","https://openalex.org/W2775483912","https://openalex.org/W2785440141","https://openalex.org/W2794486384","https://openalex.org/W2899652289","https://openalex.org/W2977386011","https://openalex.org/W4210821343","https://openalex.org/W4238550212","https://openalex.org/W6622750528"],"related_works":["https://openalex.org/W2793906533","https://openalex.org/W3121513697","https://openalex.org/W1547190445","https://openalex.org/W2370388741","https://openalex.org/W1989110363","https://openalex.org/W2340009581","https://openalex.org/W1584857149","https://openalex.org/W2116865599","https://openalex.org/W2137695414","https://openalex.org/W1999008201"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2019-05-16T00:00:00"}
