{"id":"https://openalex.org/W2938904233","doi":"https://doi.org/10.2218/ijdc.v13i1.657","title":"Curating Scientific Workflows for Biomolecular Nuclear Magnetic Resonance Spectroscopy","display_name":"Curating Scientific Workflows for Biomolecular Nuclear Magnetic Resonance Spectroscopy","publication_year":2019,"publication_date":"2019-04-19","ids":{"openalex":"https://openalex.org/W2938904233","doi":"https://doi.org/10.2218/ijdc.v13i1.657","mag":"2938904233","pmid":"https://pubmed.ncbi.nlm.nih.gov/31061674","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/6499392"},"language":"en","primary_location":{"id":"doi:10.2218/ijdc.v13i1.657","doi":"https://doi.org/10.2218/ijdc.v13i1.657","is_oa":true,"landing_page_url":"https://doi.org/10.2218/ijdc.v13i1.657","pdf_url":"http://www.ijdc.net/article/view/657/532","source":{"id":"https://openalex.org/S10223069","display_name":"International Journal of Digital Curation","issn_l":"1746-8256","issn":["1746-8256"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1","norway-1","vabb-shw"],"host_organization":"https://openalex.org/P4310321110","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/P4310321110"],"host_organization_lineage_names":["University of Edinburgh"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Digital Curation","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"http://www.ijdc.net/article/view/657/532","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089560983","display_name":"Douglas Heintz","orcid":"https://orcid.org/0000-0002-8038-4440","observed_orcids":["https://orcid.org/0000-0002-8038-4440"]},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Douglas Heintz","raw_affiliation_strings":["University of Illinois, Urbana-Champaign"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Illinois, Urbana-Champaign","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073683942","display_name":"Michael Robert Gryk","orcid":"https://orcid.org/0000-0002-3483-8384","observed_orcids":["https://orcid.org/0000-0002-3483-8384"]},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael R Gryk","raw_affiliation_strings":["University of Illinois, Urbana-Champaign"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Illinois, Urbana-Champaign","institution_ids":["https://openalex.org/I157725225"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I157725225"],"apc_list":null,"apc_paid":null,"fwci":1.1838,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.86449548,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"13","issue":"1","first_page":"286","last_page":"293"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.7734000086784363,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.7734000086784363,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.22179999947547913,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14201","display_name":"Data Analysis and Archiving","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scientific-workflows","display_name":"scientific workflows","score":0.8140000104904175},{"id":"https://openalex.org/keywords/biomolecular-nmr","display_name":"biomolecular NMR","score":0.8009999990463257},{"id":"https://openalex.org/keywords/premis","display_name":"PREMIS","score":0.8029999732971191},{"id":"https://openalex.org/keywords/digital-preservation","display_name":"digital preservation","score":0.9649999737739563},{"id":"https://openalex.org/keywords/provenance","display_name":"provenance","score":0.6669999957084656},{"id":"https://openalex.org/keywords/reproducibility","display_name":"reproducibility","score":0.7670000195503235},{"id":"https://openalex.org/keywords/data-reusability","display_name":"data reusability","score":0.8389999866485596}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.9162576198577881},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.7489972114562988},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7073243260383606},{"id":"https://openalex.org/C137981799","wikidata":"https://www.wikidata.org/wiki/Q1369184","display_name":"Reusability","level":3,"score":0.48062771558761597},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.4618394076824188},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4608677327632904},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.455132395029068},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.45074042677879333},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.4389244616031647},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3876599967479706},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3219532072544098},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.28415608406066895},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1318226456642151}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.2218/ijdc.v13i1.657","doi":"https://doi.org/10.2218/ijdc.v13i1.657","is_oa":true,"landing_page_url":"https://doi.org/10.2218/ijdc.v13i1.657","pdf_url":"http://www.ijdc.net/article/view/657/532","source":{"id":"https://openalex.org/S10223069","display_name":"International Journal of Digital Curation","issn_l":"1746-8256","issn":["1746-8256"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1","norway-1","vabb-shw"],"host_organization":"https://openalex.org/P4310321110","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/P4310321110"],"host_organization_lineage_names":["University of Edinburgh"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Digital Curation","raw_type":"journal-article"},{"id":"pmid:31061674","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31061674","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International journal of digital curation","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:5593695","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6499392","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6499392","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6499392","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Int J Digit Curation","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:1b65691af8fa4eb4b9baa5a9a40b7de4","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/1b65691af8fa4eb4b9baa5a9a40b7de4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"International Journal of Digital Curation, Vol 13, Iss 1 (2019)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.2218/ijdc.v13i1.657","doi":"https://doi.org/10.2218/ijdc.v13i1.657","is_oa":true,"landing_page_url":"https://doi.org/10.2218/ijdc.v13i1.657","pdf_url":"http://www.ijdc.net/article/view/657/532","source":{"id":"https://openalex.org/S10223069","display_name":"International Journal of Digital Curation","issn_l":"1746-8256","issn":["1746-8256"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1","norway-1","vabb-shw"],"host_organization":"https://openalex.org/P4310321110","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/P4310321110"],"host_organization_lineage_names":["University of Edinburgh"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Digital Curation","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G371175633","display_name":"Center for Biomolecular NMR Data Processing and Analysis","funder_award_id":"P41GM111135","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5198345541","display_name":null,"funder_award_id":"GM111135","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2938904233.pdf","grobid_xml":"https://content.openalex.org/works/W2938904233.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W654958166","https://openalex.org/W1526508038","https://openalex.org/W1528852411","https://openalex.org/W2105673252","https://openalex.org/W2150425210","https://openalex.org/W2560471521","https://openalex.org/W2608193358","https://openalex.org/W2756302149","https://openalex.org/W4229743141"],"related_works":["https://openalex.org/W2947210064","https://openalex.org/W3116524183","https://openalex.org/W654958166","https://openalex.org/W4205965505","https://openalex.org/W2608193358","https://openalex.org/W2105673252","https://openalex.org/W4312545096","https://openalex.org/W7141637296","https://openalex.org/W1528852411","https://openalex.org/W1540414121"],"abstract_inverted_index":{"This":[0,61],"paper":[1],"describes":[2],"our":[3,47],"recent":[4],"and":[5,18,118,132],"ongoing":[6],"efforts":[7,28],"for":[8,58,74],"enhancing":[9],"the":[10,55,70,87,98,101,116,127],"curation":[11,120],"of":[12,20,54,100,134],"scientific":[13,128],"workflows":[14],"to":[15,51],"improve":[16],"reproducibility":[17],"reusability":[19],"biomolecular":[21],"nuclear":[22],"magnetic":[23],"resonance":[24],"(bioNMR)":[25],"data.":[26,102,129],"Our":[27],"have":[29],"focused":[30],"on":[31],"both":[32],"developing":[33],"a":[34,81,108],"workflow":[35,48,63],"management":[36,64],"system,":[37],"called":[38],"CONNJUR":[39],"Workflow":[40],"Builder":[41],"(CWB),":[42],"as":[43,45,137,139],"well":[44,138],"refactoring":[46],"data":[49,90,119],"model":[50,57],"make":[52],"use":[53],"PREMIS":[56,94],"digital":[59],"preservation.":[60],"revised":[62],"system":[65],"will":[66],"be":[67],"available":[68],"through":[69],"NMRbox":[71],"cloud-computing":[72],"platform":[73],"bioNMR.":[75],"In":[76,113],"addition,":[77],"we":[78],"are":[79,104,142],"implementing":[80],"new":[82],"file":[83,110],"structure":[84],"which":[85],"bundles":[86],"original":[88],"binary":[89],"files":[91],"along":[92,125],"with":[93,126],"XML":[95],"records":[96],"describing":[97],"provenance":[99,117],"These":[103],"packaged":[105],"together":[106,124],"using":[107],"standardized":[109],"archive":[111],"utility.":[112],"this":[114],"manner,":[115],"information":[121],"is":[122],"maintained":[123],"The":[130],"benefits":[131],"limitations":[133],"these":[135],"approaches":[136],"future":[140],"directions":[141],"discussed.":[143]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2019,"cited_by_count":2}],"updated_date":"2026-10-28T10:33:24.094632","created_date":"2019-04-25T00:00:00"}
