{"id":"https://openalex.org/W2937195022","doi":"https://doi.org/10.3390/f10040335","title":"Genome-Wide Identification of WRKY Genes and Their Response to Cold Stress in Coffea canephora","display_name":"Genome-Wide Identification of WRKY Genes and Their Response to Cold Stress in Coffea canephora","publication_year":2019,"publication_date":"2019-04-14","ids":{"openalex":"https://openalex.org/W2937195022","doi":"https://doi.org/10.3390/f10040335","mag":"2937195022"},"language":"en","primary_location":{"id":"doi:10.3390/f10040335","doi":"https://doi.org/10.3390/f10040335","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3390/f10040335","pdf_url":"https://www.mdpi.com/1999-4907/10/4/335/pdf?version=1555316272","source":{"id":"https://openalex.org/S71324801","display_name":"Forests","issn_l":"1999-4907","issn":["1999-4907"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Forests","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1999-4907/10/4/335/pdf?version=1555316272","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100332433","display_name":"Xiangshu Dong","orcid":"https://orcid.org/0000-0002-6640-0731","observed_orcids":["https://orcid.org/0000-0002-6640-0731"]},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangshu Dong","raw_affiliation_strings":["School of Agriculture, Yunnan University, Kunming 650500, China"],"raw_orcid":"https://orcid.org/0000-0002-6640-0731","affiliations":[{"raw_affiliation_string":"School of Agriculture, Yunnan University, Kunming 650500, China","institution_ids":["https://openalex.org/I189210763"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100636308","display_name":"Ya\u2010Nan Yang","orcid":"https://orcid.org/0000-0001-6367-8431","observed_orcids":["https://orcid.org/0000-0001-6367-8431"]},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanan Yang","raw_affiliation_strings":["School of Agriculture, Yunnan University, Kunming 650500, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Agriculture, Yunnan University, Kunming 650500, China","institution_ids":["https://openalex.org/I189210763"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101601747","display_name":"Ziying Zhang","orcid":"https://orcid.org/0000-0002-7402-7893","observed_orcids":["https://orcid.org/0000-0002-7402-7893"]},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziying Zhang","raw_affiliation_strings":["School of Agriculture, Yunnan University, Kunming 650500, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Agriculture, Yunnan University, Kunming 650500, China","institution_ids":["https://openalex.org/I189210763"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020033769","display_name":"Ziwei Xiao","orcid":"https://orcid.org/0000-0002-8031-6333","observed_orcids":["https://orcid.org/0000-0002-8031-6333"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ziwei Xiao","raw_affiliation_strings":["Dehong Tropical Agriculture Research Institute, Dehong 678600, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dehong Tropical Agriculture Research Institute, Dehong 678600, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065730382","display_name":"Xuehui Bai","orcid":"https://orcid.org/0009-0003-9610-1833","observed_orcids":["https://orcid.org/0009-0003-9610-1833","https://orcid.org/0009-0009-2344-6658"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xuehui Bai","raw_affiliation_strings":["Dehong Tropical Agriculture Research Institute, Dehong 678600, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dehong Tropical Agriculture Research Institute, Dehong 678600, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052223213","display_name":"Jing Gao","orcid":"https://orcid.org/0000-0002-5317-2733","observed_orcids":["https://orcid.org/0000-0002-5317-2733","https://orcid.org/0009-0008-0823-2136"]},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Gao","raw_affiliation_strings":["School of Agriculture, Yunnan University, Kunming 650500, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Agriculture, Yunnan University, Kunming 650500, China","institution_ids":["https://openalex.org/I189210763"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090020045","display_name":"Yoonkang Hur","orcid":"https://orcid.org/0000-0002-2325-2249","observed_orcids":["https://orcid.org/0000-0002-2325-2249"]},"institutions":[{"id":"https://openalex.org/I196345858","display_name":"Chungnam National University","ror":"https://ror.org/0227as991","country_code":"KR","type":"education","lineage":["https://openalex.org/I196345858"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Yoonkang Hur","raw_affiliation_strings":["Department of Biological Sciences, Chungnam National University, Daejeon 34141, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Chungnam National University, Daejeon 34141, Korea","institution_ids":["https://openalex.org/I196345858"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040873004","display_name":"Shumei Hao","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shumei Hao","raw_affiliation_strings":["School of Agriculture, Yunnan University, Kunming 650500, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Agriculture, Yunnan University, Kunming 650500, China","institution_ids":["https://openalex.org/I189210763"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5104306847","display_name":"Feifei He","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Feifei He","raw_affiliation_strings":["School of Agriculture, Yunnan University, Kunming 650500, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Agriculture, Yunnan University, Kunming 650500, China","institution_ids":["https://openalex.org/I189210763"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5104306847"],"corresponding_institution_ids":["https://openalex.org/I189210763"],"apc_list":{"value":1800,"currency":"CHF","value_usd":1824},"apc_paid":{"value":1800,"currency":"CHF","value_usd":1824},"fwci":0.8057,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.67218416,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":98},"biblio":{"volume":"10","issue":"4","first_page":"335","last_page":"335"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11237","display_name":"Plant Gene Expression Analysis","score":0.4690000116825104,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11237","display_name":"Plant Gene Expression Analysis","score":0.4690000116825104,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10014","display_name":"Plant Stress Responses and Tolerance","score":0.4546000063419342,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.058800000697374344,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/wrky-transcription-factors","display_name":"WRKY transcription factors","score":0.9539999961853027},{"id":"https://openalex.org/keywords/coffea-canephora","display_name":"Coffea canephora","score":0.9990000128746033},{"id":"https://openalex.org/keywords/cold-stress","display_name":"cold stress","score":0.9679999947547913},{"id":"https://openalex.org/keywords/cold-acclimation","display_name":"cold acclimation","score":0.9860000014305115},{"id":"https://openalex.org/keywords/gene-expression-regulation","display_name":"gene expression regulation","score":0.6830000281333923},{"id":"https://openalex.org/keywords/cold-stress-response","display_name":"cold stress response","score":0.44699999690055847},{"id":"https://openalex.org/keywords/carbohydrate-metabolism","display_name":"carbohydrate metabolism","score":0.6060000061988831},{"id":"https://openalex.org/keywords/lipid-metabolism","display_name":"lipid metabolism","score":0.996999979019165},{"id":"https://openalex.org/keywords/photosynthesis","display_name":"photosynthesis","score":0.9089999794960022}],"concepts":[{"id":"https://openalex.org/C79877727","wikidata":"https://www.wikidata.org/wiki/Q24786020","display_name":"WRKY protein domain","level":5,"score":0.9490755796432495},{"id":"https://openalex.org/C2781244667","wikidata":"https://www.wikidata.org/wiki/Q47532","display_name":"Coffea canephora","level":3,"score":0.9383076429367065},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7489245533943176},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6545159220695496},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5424202084541321},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5397812128067017},{"id":"https://openalex.org/C149904235","wikidata":"https://www.wikidata.org/wiki/Q7049620","display_name":"Nonsynonymous substitution","level":4,"score":0.4517785608768463},{"id":"https://openalex.org/C24284526","wikidata":"https://www.wikidata.org/wiki/Q204785","display_name":"Zinc finger","level":4,"score":0.41667911410331726},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.3331533670425415},{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.2984306812286377},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.2732865810394287},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.23504874110221863},{"id":"https://openalex.org/C2993298077","wikidata":"https://www.wikidata.org/wiki/Q47685","display_name":"Coffea arabica","level":2,"score":0.20306676626205444}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3390/f10040335","doi":"https://doi.org/10.3390/f10040335","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3390/f10040335","pdf_url":"https://www.mdpi.com/1999-4907/10/4/335/pdf?version=1555316272","source":{"id":"https://openalex.org/S71324801","display_name":"Forests","issn_l":"1999-4907","issn":["1999-4907"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Forests","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:cdc8f315fe9f48fcb732727599443f7f","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/cdc8f315fe9f48fcb732727599443f7f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Forests, Vol 10, Iss 4, p 335 (2019)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/f10040335","doi":"https://doi.org/10.3390/f10040335","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3390/f10040335","pdf_url":"https://www.mdpi.com/1999-4907/10/4/335/pdf?version=1555316272","source":{"id":"https://openalex.org/S71324801","display_name":"Forests","issn_l":"1999-4907","issn":["1999-4907"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Forests","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.5666999816894531,"id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1782493004","display_name":null,"funder_award_id":"31601771","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2937195022.pdf","grobid_xml":"https://content.openalex.org/works/W2937195022.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W45534775","https://openalex.org/W814652830","https://openalex.org/W1847064969","https://openalex.org/W1890656904","https://openalex.org/W1963729078","https://openalex.org/W1965474209","https://openalex.org/W1965705746","https://openalex.org/W1968746182","https://openalex.org/W1974414763","https://openalex.org/W1994145712","https://openalex.org/W1995015805","https://openalex.org/W2010452140","https://openalex.org/W2011790124","https://openalex.org/W2017815014","https://openalex.org/W2024520398","https://openalex.org/W2026798558","https://openalex.org/W2028886234","https://openalex.org/W2034709873","https://openalex.org/W2038120864","https://openalex.org/W2058125831","https://openalex.org/W2059569140","https://openalex.org/W2078636977","https://openalex.org/W2107277218","https://openalex.org/W2107593640","https://openalex.org/W2115401971","https://openalex.org/W2117002261","https://openalex.org/W2117756181","https://openalex.org/W2119205648","https://openalex.org/W2129460142","https://openalex.org/W2130284438","https://openalex.org/W2135621733","https://openalex.org/W2137015675","https://openalex.org/W2146139364","https://openalex.org/W2152207030","https://openalex.org/W2156248428","https://openalex.org/W2157009395","https://openalex.org/W2163848443","https://openalex.org/W2165463056","https://openalex.org/W2166671294","https://openalex.org/W2168830450","https://openalex.org/W2169932994","https://openalex.org/W2262887429","https://openalex.org/W2296044440","https://openalex.org/W2320271240","https://openalex.org/W2344695951","https://openalex.org/W2473371387","https://openalex.org/W2515729167","https://openalex.org/W2518564702","https://openalex.org/W2611604995","https://openalex.org/W2746138496","https://openalex.org/W2746327534","https://openalex.org/W2765380711","https://openalex.org/W2795429082","https://openalex.org/W4239039618"],"related_works":["https://openalex.org/W7164920223","https://openalex.org/W7223056802","https://openalex.org/W4383908740","https://openalex.org/W2156248428","https://openalex.org/W2223230728","https://openalex.org/W2807832766","https://openalex.org/W3215832981","https://openalex.org/W2085008476","https://openalex.org/W4294693773","https://openalex.org/W4400136424"],"abstract_inverted_index":{"WRKY":[0,79],"transcription":[1],"factors":[2],"are":[3,31],"known":[4],"to":[5,60,122,151,165,194],"play":[6],"roles":[7],"in":[8,12,129,137],"diverse":[9],"stress":[10,46],"responses":[11],"plants.":[13],"Low":[14],"temperatures":[15],"limit":[16],"the":[17,37,56,77,94,149,154,166,179,204],"geographic":[18],"distribution":[19],"of":[20,28,39,143],"Coffea":[21],"canephora":[22,30,41,58],"Pierre":[23],"ex":[24],"A.Froehner.":[25],"The":[26],"WRKYs":[27,42],"C.":[29,40,57,130],"still":[32,48],"not":[33],"well":[34],"characterized,":[35],"and":[36,81,107,141,174,181],"response":[38,150,164],"(CcWRKYs)":[43],"under":[44],"cold":[45,95,113,167,195,209],"is":[47],"largely":[49],"unknown.":[50],"We":[51],"identified":[52],"49":[53],"CcWRKYs":[54,67,90,99,109],"from":[55],"genome":[59],"gain":[61],"insight":[62],"into":[63,70,163],"these":[64],"mechanisms.":[65],"These":[66,132,197],"were":[68,74,91,100,110,135,161],"divided":[69],"three":[71],"groups":[72],"that":[73,88,185,192],"based":[75],"on":[76],"conserved":[78],"domains":[80],"zinc-finger":[82],"structure.":[83],"Gene":[84],"expression":[85],"analysis":[86,121,183],"demonstrated":[87],"14":[89],"induced":[92],"during":[93],"acclimation":[96],"stage,":[97],"17":[98],"preferentially":[101],"upregulated":[102],"by":[103,112,148],"4":[104],"\u00b0C":[105],"treatment,":[106],"12":[108],"downregulated":[111],"stress.":[114,196],"Subsequently,":[115],"we":[116],"carried":[117],"out":[118],"a":[119,200],"genome-wide":[120],"predict":[123],"14,513":[124],"potential":[125],"CcWRKY":[126,156,186],"target":[127,157],"genes":[128,134,160],"canephora.":[131],"isolated":[133],"involved":[136],"multiple":[138],"biological":[139],"processes,":[140],"most":[142],"them":[144],"could":[145],"be":[146],"grouped":[147],"stimulus.":[152],"Among":[153],"putative":[155,190],"genes,":[158],"235":[159],"categorized":[162],"process,":[168],"including":[169],"carbohydrate":[170],"metabolic,":[171,173],"lipid":[172],"photosynthesis":[175],"process-related":[176],"genes.":[177],"Furthermore,":[178],"qRT-PCR":[180],"correlation":[182],"indicated":[184],"might":[187],"control":[188],"their":[189],"targets":[191],"respond":[193],"results":[198],"provide":[199],"basis":[201],"for":[202,207],"understanding":[203],"molecular":[205],"mechanism":[206],"CcWRKY-mediated":[208],"responses.":[210]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2019-04-25T00:00:00"}
