{"id":"https://openalex.org/W2931152478","doi":"https://doi.org/10.1038/s41467-019-09599-8","title":"Coordinated host-pathogen transcriptional dynamics revealed using sorted subpopulations and single macrophages infected with Candida albicans","display_name":"Coordinated host-pathogen transcriptional dynamics revealed using sorted subpopulations and single macrophages infected with Candida albicans","publication_year":2019,"publication_date":"2019-04-08","ids":{"openalex":"https://openalex.org/W2931152478","doi":"https://doi.org/10.1038/s41467-019-09599-8","mag":"2931152478","pmid":"https://pubmed.ncbi.nlm.nih.gov/30962448","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/6453965"},"language":"en","primary_location":{"id":"doi:10.1038/s41467-019-09599-8","doi":"https://doi.org/10.1038/s41467-019-09599-8","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41467-019-09599-8","pdf_url":"https://www.nature.com/articles/s41467-019-09599-8.pdf","source":{"id":"https://openalex.org/S64187185","display_name":"Nature Communications","issn_l":"2041-1723","issn":["2041-1723"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Communications","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.nature.com/articles/s41467-019-09599-8.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015479417","display_name":"Jos\u00e9 Fernando Mu\u00f1oz","orcid":"https://orcid.org/0000-0003-4987-7957","observed_orcids":["https://orcid.org/0000-0003-4987-7957"]},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 F. Mu\u00f1oz","raw_affiliation_strings":["Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA"],"raw_orcid":"https://orcid.org/0000-0003-4987-7957","affiliations":[{"raw_affiliation_string":"Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA","institution_ids":["https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079911886","display_name":"Toni Marie Delorey","orcid":"https://orcid.org/0000-0001-6614-3803","observed_orcids":["https://orcid.org/0000-0001-6614-3803"]},"institutions":[{"id":"https://openalex.org/I107077323","display_name":"Worcester Polytechnic Institute","ror":"https://ror.org/05ejpqr48","country_code":"US","type":"education","lineage":["https://openalex.org/I107077323"]},{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Toni Delorey","raw_affiliation_strings":["Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA","Worcester Polytechnic Institute, Worcester, MA, 01609, USA"],"raw_orcid":"https://orcid.org/0000-0001-6614-3803","affiliations":[{"raw_affiliation_string":"Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA","institution_ids":["https://openalex.org/I107606265"]},{"raw_affiliation_string":"Worcester Polytechnic Institute, Worcester, MA, 01609, USA","institution_ids":["https://openalex.org/I107077323"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008573434","display_name":"Christopher B. Ford","orcid":"https://orcid.org/0000-0002-4079-8673","observed_orcids":["https://orcid.org/0000-0002-4079-8673"]},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher B. Ford","raw_affiliation_strings":["Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA","institution_ids":["https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007937137","display_name":"Bi yu Li","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bi Yu Li","raw_affiliation_strings":["Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA","institution_ids":["https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048267912","display_name":"Dawn Anne Thompson","orcid":"https://orcid.org/0000-0002-1341-4435","observed_orcids":["https://orcid.org/0000-0002-1341-4435"]},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dawn A. Thompson","raw_affiliation_strings":["Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA","institution_ids":["https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023472225","display_name":"Reeta P. Rao","orcid":"https://orcid.org/0000-0001-7936-9617","observed_orcids":["https://orcid.org/0000-0001-7936-9617"]},"institutions":[{"id":"https://openalex.org/I107077323","display_name":"Worcester Polytechnic Institute","ror":"https://ror.org/05ejpqr48","country_code":"US","type":"education","lineage":["https://openalex.org/I107077323"]},{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Reeta P. Rao","raw_affiliation_strings":["Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA. rpr@wpi.edu","Worcester Polytechnic Institute, Worcester, MA, 01609, USA. rpr@wpi.edu","Worcester Polytechnic Institute, Worcester, MA, 01609, USA"],"raw_orcid":"https://orcid.org/0000-0001-7936-9617","affiliations":[{"raw_affiliation_string":"Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA. rpr@wpi.edu","institution_ids":["https://openalex.org/I107606265"]},{"raw_affiliation_string":"Worcester Polytechnic Institute, Worcester, MA, 01609, USA. rpr@wpi.edu","institution_ids":["https://openalex.org/I107077323"]},{"raw_affiliation_string":"Worcester Polytechnic Institute, Worcester, MA, 01609, USA","institution_ids":["https://openalex.org/I107077323"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009421399","display_name":"Christina A. Cuomo","orcid":"https://orcid.org/0000-0002-5778-960X","observed_orcids":["https://orcid.org/0000-0002-5778-960X"]},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Christina A. Cuomo","raw_affiliation_strings":["Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA. cuomo@broadinstitute.org","Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA"],"raw_orcid":"https://orcid.org/0000-0002-5778-960X","affiliations":[{"raw_affiliation_string":"Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA. cuomo@broadinstitute.org","institution_ids":["https://openalex.org/I107606265"]},{"raw_affiliation_string":"Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA","institution_ids":["https://openalex.org/I107606265"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5009421399","https://openalex.org/A5023472225"],"corresponding_institution_ids":["https://openalex.org/I107077323","https://openalex.org/I107606265"],"apc_list":{"value":5200,"currency":"USD","value_usd":5200},"apc_paid":{"value":5200,"currency":"USD","value_usd":5200},"fwci":10.1045,"has_fulltext":true,"cited_by_count":89,"citation_normalized_percentile":{"value":0.9908393,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"10","issue":"1","first_page":"1607","last_page":"1607"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10150","display_name":"Antifungal resistance and susceptibility","score":0.6538000106811523,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10150","display_name":"Antifungal resistance and susceptibility","score":0.6538000106811523,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.3019999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11037","display_name":"Fungal Infections and Studies","score":0.01850000023841858,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/candida-albicans","display_name":"Candida albicans","score":0.9980000257492065},{"id":"https://openalex.org/keywords/macrophages","display_name":"macrophages","score":0.9259999990463257},{"id":"https://openalex.org/keywords/host-pathogen-interaction","display_name":"host-pathogen interaction","score":0.8349999785423279},{"id":"https://openalex.org/keywords/single-cell-transcriptomics","display_name":"single-cell transcriptomics","score":0.7699999809265137},{"id":"https://openalex.org/keywords/phagocytosis","display_name":"phagocytosis","score":0.8629999756813049},{"id":"https://openalex.org/keywords/phagosome","display_name":"phagosome","score":0.7429999709129333},{"id":"https://openalex.org/keywords/differential-splicing","display_name":"differential splicing","score":0.9789999723434448},{"id":"https://openalex.org/keywords/transcriptional-dynamics","display_name":"transcriptional dynamics","score":0.6290000081062317},{"id":"https://openalex.org/keywords/innate-immunity","display_name":"innate immunity","score":0.6340000033378601},{"id":"https://openalex.org/keywords/fungal-infection","display_name":"fungal infection","score":0.4909999966621399},{"id":"https://openalex.org/keywords/transcriptome-heterogeneity","display_name":"transcriptome heterogeneity","score":0.4869999885559082}],"concepts":[{"id":"https://openalex.org/C2780917455","wikidata":"https://www.wikidata.org/wiki/Q310443","display_name":"Candida albicans","level":2,"score":0.790289044380188},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.7290289402008057},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.6518775224685669},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.6506690979003906},{"id":"https://openalex.org/C3019170707","wikidata":"https://www.wikidata.org/wiki/Q6471530","display_name":"Fungal pathogen","level":3,"score":0.5527785420417786},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5374377965927124},{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.5349931120872498},{"id":"https://openalex.org/C145081991","wikidata":"https://www.wikidata.org/wiki/Q2576388","display_name":"Corpus albicans","level":3,"score":0.45687735080718994},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19102448225021362},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000076662","descriptor_name":"Host Microbial Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000076662","descriptor_name":"Host Microbial Interactions","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002176","descriptor_name":"Candida albicans","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D002469","descriptor_name":"Cell Separation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002473","descriptor_name":"Cell Wall","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002473","descriptor_name":"Cell Wall","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005434","descriptor_name":"Flow Cytometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010587","descriptor_name":"Phagocytosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010587","descriptor_name":"Phagocytosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015966","descriptor_name":"Gene Expression Regulation, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D061251","descriptor_name":"Primary Cell Culture","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1038/s41467-019-09599-8","doi":"https://doi.org/10.1038/s41467-019-09599-8","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41467-019-09599-8","pdf_url":"https://www.nature.com/articles/s41467-019-09599-8.pdf","source":{"id":"https://openalex.org/S64187185","display_name":"Nature Communications","issn_l":"2041-1723","issn":["2041-1723"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Communications","raw_type":"journal-article"},{"id":"doi:10.1101/350322","doi":"https://doi.org/10.1101/350322","is_oa":true,"landing_page_url":"https://doi.org/10.1101/350322","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2019/01/30/350322.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmh:oai:europepmc.org:5440594","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6453965","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6453965","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6453965","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nat Commun","raw_type":"Text"},{"id":"pmid:30962448","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30962448","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature communications","raw_type":"Journal Article"},{"id":"pmh:oai:RePEc:nat:natcom:v:10:y:2019:i:1:d:10.1038_s41467-019-09599-8","doi":null,"is_oa":false,"landing_page_url":"https://www.nature.com/articles/s41467-019-09599-8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:dd53211cb6474e08a5b716900a6400e2","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/dd53211cb6474e08a5b716900a6400e2","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nature Communications, Vol 10, Iss 1, Pp 1-15 (2019)","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:ed4108988c524bcc93a97e3410c423b9","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/ed4108988c524bcc93a97e3410c423b9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nature Communications, Vol 10, Iss 1, Pp 1-15 (2019)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1038/s41467-019-09599-8","doi":"https://doi.org/10.1038/s41467-019-09599-8","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41467-019-09599-8","pdf_url":"https://www.nature.com/articles/s41467-019-09599-8.pdf","source":{"id":"https://openalex.org/S64187185","display_name":"Nature Communications","issn_l":"2041-1723","issn":["2041-1723"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Communications","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.504800021648407,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1252762801","display_name":"Advancing genomic, transcriptomic and functional approaches to combat globally important and emerging pathogens","funder_award_id":"U19AI110818","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G4225998524","display_name":"B. subtilis as a probiotic and its role in intestinal colonization by pathogenic fungi C. albicans - implications for inflammatory bowel disease","funder_award_id":"R15AT009926","funder_id":"https://openalex.org/F4320337593","funder_display_name":"National Center for Complementary and Integrative Health"}],"funders":[{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320337593","display_name":"National Center for Complementary and Integrative Health","ror":"https://ror.org/00190t495"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2931152478.pdf","grobid_xml":"https://content.openalex.org/works/W2931152478.grobid-xml"},"referenced_works_count":77,"referenced_works":["https://openalex.org/W1931054877","https://openalex.org/W1976281822","https://openalex.org/W1982958549","https://openalex.org/W1984883254","https://openalex.org/W1988820663","https://openalex.org/W1991911626","https://openalex.org/W1992151622","https://openalex.org/W1993727333","https://openalex.org/W1999574084","https://openalex.org/W2004591077","https://openalex.org/W2005249358","https://openalex.org/W2005497166","https://openalex.org/W2011657487","https://openalex.org/W2012034776","https://openalex.org/W2015593638","https://openalex.org/W2021995791","https://openalex.org/W2026352429","https://openalex.org/W2035155416","https://openalex.org/W2038511295","https://openalex.org/W2059398061","https://openalex.org/W2060300932","https://openalex.org/W2062623868","https://openalex.org/W2063945628","https://openalex.org/W2068373367","https://openalex.org/W2069089843","https://openalex.org/W2069773272","https://openalex.org/W2077167936","https://openalex.org/W2078444779","https://openalex.org/W2083051190","https://openalex.org/W2083666225","https://openalex.org/W2092794542","https://openalex.org/W2102212449","https://openalex.org/W2103441770","https://openalex.org/W2108871359","https://openalex.org/W2109962249","https://openalex.org/W2110768394","https://openalex.org/W2110874942","https://openalex.org/W2112367826","https://openalex.org/W2113576692","https://openalex.org/W2114104545","https://openalex.org/W2117131162","https://openalex.org/W2117231363","https://openalex.org/W2117464846","https://openalex.org/W2128337342","https://openalex.org/W2131271579","https://openalex.org/W2137460766","https://openalex.org/W2138101634","https://openalex.org/W2140258573","https://openalex.org/W2140935709","https://openalex.org/W2146637770","https://openalex.org/W2147671956","https://openalex.org/W2149714948","https://openalex.org/W2153104382","https://openalex.org/W2158714788","https://openalex.org/W2162955464","https://openalex.org/W2164277408","https://openalex.org/W2166909888","https://openalex.org/W2167279371","https://openalex.org/W2167314251","https://openalex.org/W2170551349","https://openalex.org/W2187089797","https://openalex.org/W2248344430","https://openalex.org/W2261682386","https://openalex.org/W2534610127","https://openalex.org/W2547426852","https://openalex.org/W2551089731","https://openalex.org/W2560738133","https://openalex.org/W2605810679","https://openalex.org/W2616950861","https://openalex.org/W2752301541","https://openalex.org/W2766902857","https://openalex.org/W2783354803","https://openalex.org/W2896513955","https://openalex.org/W2950541340","https://openalex.org/W2951636677","https://openalex.org/W4213353716","https://openalex.org/W4247053599"],"related_works":["https://openalex.org/W4308307011","https://openalex.org/W4200371066","https://openalex.org/W2110874942","https://openalex.org/W2049237396","https://openalex.org/W2119926361","https://openalex.org/W7212917380","https://openalex.org/W2014174589","https://openalex.org/W2025269616","https://openalex.org/W2547426852","https://openalex.org/W4417462002"],"abstract_inverted_index":{"The":[0,107],"outcome":[1],"of":[2,15,72,109],"fungal":[3],"infections":[4],"depends":[5],"on":[6],"interactions":[7],"with":[8,52],"innate":[9],"immune":[10],"cells.":[11],"Within":[12],"a":[13,118],"population":[14],"macrophages":[16,112],"encountering":[17],"Candida":[18],"albicans,":[19],"there":[20],"are":[21],"distinct":[22],"host-pathogen":[23,145],"trajectories;":[24],"however,":[25],"little":[26],"is":[27],"known":[28],"about":[29],"the":[30,63,98,104],"molecular":[31],"heterogeneity":[32,149],"that":[33,84,133],"governs":[34],"these":[35],"fates.":[36],"Here":[37],"we":[38],"developed":[39],"an":[40,69,141],"experimental":[41],"system":[42],"to":[43,96,147],"separate":[44],"interaction":[45],"stages":[46],"and":[47,58,65,77,102,113,126,130],"single":[48,110],"macrophage":[49],"cells":[50,57],"infected":[51,111],"C.":[53,81,91,115],"albicans":[54,82,92,116],"from":[55],"uninfected":[56],"assessed":[59],"transcriptional":[60],"variability":[61],"in":[62,75,122,150],"host":[64],"fungus.":[66],"Macrophages":[67],"displayed":[68,117],"initial":[70],"up-regulation":[71],"pathways":[73],"involved":[74],"phagocytosis":[76],"proinflammatory":[78],"response":[79],"after":[80],"exposure":[83],"declined":[85],"during":[86],"later":[87],"time":[88],"points.":[89],"Phagocytosed":[90],"shifted":[93],"expression":[94,124,128],"programs":[95],"survive":[97],"nutrient":[99],"poor":[100],"phagosome":[101],"remodeled":[103],"cell":[105],"wall.":[106],"transcriptomes":[108],"phagocytosed":[114],"tightly":[119],"coordinated":[120],"shift":[121],"gene":[123],"co-stages":[125],"revealed":[127],"bimodality":[129],"differential":[131],"splicing":[132],"may":[134],"drive":[135],"infection":[136],"outcome.":[137],"This":[138],"work":[139],"establishes":[140],"approach":[142],"for":[143],"studying":[144],"trajectories":[146],"resolve":[148],"dynamic":[151],"populations.":[152]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-11-03T10:50:19.383937","created_date":"2019-04-11T00:00:00"}
