{"id":"https://openalex.org/W2913753189","doi":"https://doi.org/10.3201/eid2503.181370","title":"Whole-Genome Sequencing of Drug-Resistant Mycobacterium tuberculosis Strains, Tunisia, 2012\u20132016","display_name":"Whole-Genome Sequencing of Drug-Resistant Mycobacterium tuberculosis Strains, Tunisia, 2012\u20132016","publication_year":2019,"publication_date":"2019-02-05","ids":{"openalex":"https://openalex.org/W2913753189","doi":"https://doi.org/10.3201/eid2503.181370","mag":"2913753189","pmid":"https://pubmed.ncbi.nlm.nih.gov/30789128","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/6390741"},"language":"en","primary_location":{"id":"doi:10.3201/eid2503.181370","doi":"https://doi.org/10.3201/eid2503.181370","is_oa":true,"landing_page_url":"https://doi.org/10.3201/eid2503.181370","pdf_url":"https://wwwnc.cdc.gov/eid/article/25/3/pdfs/18-1370.pdf","source":{"id":"https://openalex.org/S189281586","display_name":"Emerging infectious diseases","issn_l":"1080-6040","issn":["1080-6040","1080-6059"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315581","host_organization_name":"Centers for Disease Control and Prevention","host_organization_lineage":["https://openalex.org/P4310315581"],"host_organization_lineage_names":["Centers for Disease Control and Prevention"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Emerging Infectious Diseases","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://wwwnc.cdc.gov/eid/article/25/3/pdfs/18-1370.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090540589","display_name":"Imen Bouzouita","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I166928557","display_name":"University of Monastir","ror":"https://ror.org/00nhtcg76","country_code":"TN","type":"education","lineage":["https://openalex.org/I166928557"]},{"id":"https://openalex.org/I4210133214","display_name":"IRCCS Ospedale San Raffaele","ror":"https://ror.org/039zxt351","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210133214","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I63596082","display_name":"Tunis El Manar University","ror":"https://ror.org/029cgt552","country_code":"TN","type":"education","lineage":["https://openalex.org/I63596082"]}],"countries":["IT","TN"],"is_corresponding":true,"raw_author_name":"Imen Bouzouita","raw_affiliation_strings":["University of Tunis El Manar , Tunis , Tunisia","B. Midouni); San Raffaele Scientific Institute, Milan, Italy","National Reference Laboratory for Mycobacteria, Ariana, Tunisia","University of Monastir, Monastir, Tunisia","University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tunis El Manar , Tunis , Tunisia","institution_ids":["https://openalex.org/I63596082"]},{"raw_affiliation_string":"B. Midouni); San Raffaele Scientific Institute, Milan, Italy","institution_ids":["https://openalex.org/I4210133214"]},{"raw_affiliation_string":"National Reference Laboratory for Mycobacteria, Ariana, Tunisia","institution_ids":[]},{"raw_affiliation_string":"University of Monastir, Monastir, Tunisia","institution_ids":["https://openalex.org/I166928557"]},{"raw_affiliation_string":"University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,","institution_ids":["https://openalex.org/I63596082"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028275375","display_name":"Andrea Maurizio Cabibbe","orcid":"https://orcid.org/0000-0001-9727-6465","observed_orcids":["https://orcid.org/0000-0001-9727-6465"]},"institutions":[{"id":"https://openalex.org/I166928557","display_name":"University of Monastir","ror":"https://ror.org/00nhtcg76","country_code":"TN","type":"education","lineage":["https://openalex.org/I166928557"]},{"id":"https://openalex.org/I4210133214","display_name":"IRCCS Ospedale San Raffaele","ror":"https://ror.org/039zxt351","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210133214","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I63596082","display_name":"Tunis El Manar University","ror":"https://ror.org/029cgt552","country_code":"TN","type":"education","lineage":["https://openalex.org/I63596082"]}],"countries":["IT","TN"],"is_corresponding":false,"raw_author_name":"Andrea Maurizio Cabibbe","raw_affiliation_strings":["B. Midouni); San Raffaele Scientific Institute, Milan, Italy","National Reference Laboratory for Mycobacteria, Ariana, Tunisia","University of Monastir, Monastir, Tunisia","University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"B. Midouni); San Raffaele Scientific Institute, Milan, Italy","institution_ids":["https://openalex.org/I4210133214"]},{"raw_affiliation_string":"National Reference Laboratory for Mycobacteria, Ariana, Tunisia","institution_ids":[]},{"raw_affiliation_string":"University of Monastir, Monastir, Tunisia","institution_ids":["https://openalex.org/I166928557"]},{"raw_affiliation_string":"University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,","institution_ids":["https://openalex.org/I63596082"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014104516","display_name":"Alberto Trovato","orcid":"https://orcid.org/0000-0003-4494-5762","observed_orcids":["https://orcid.org/0000-0003-4494-5762"]},"institutions":[{"id":"https://openalex.org/I166928557","display_name":"University of Monastir","ror":"https://ror.org/00nhtcg76","country_code":"TN","type":"education","lineage":["https://openalex.org/I166928557"]},{"id":"https://openalex.org/I4210133214","display_name":"IRCCS Ospedale San Raffaele","ror":"https://ror.org/039zxt351","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210133214","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I63596082","display_name":"Tunis El Manar University","ror":"https://ror.org/029cgt552","country_code":"TN","type":"education","lineage":["https://openalex.org/I63596082"]}],"countries":["IT","TN"],"is_corresponding":false,"raw_author_name":"Alberto Trovato","raw_affiliation_strings":["B. Midouni); San Raffaele Scientific Institute, Milan, Italy","National Reference Laboratory for Mycobacteria, Ariana, Tunisia","University of Monastir, Monastir, Tunisia","University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"B. Midouni); San Raffaele Scientific Institute, Milan, Italy","institution_ids":["https://openalex.org/I4210133214"]},{"raw_affiliation_string":"National Reference Laboratory for Mycobacteria, Ariana, Tunisia","institution_ids":[]},{"raw_affiliation_string":"University of Monastir, Monastir, Tunisia","institution_ids":["https://openalex.org/I166928557"]},{"raw_affiliation_string":"University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,","institution_ids":["https://openalex.org/I63596082"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012399045","display_name":"Henda Daroui","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I166928557","display_name":"University of Monastir","ror":"https://ror.org/00nhtcg76","country_code":"TN","type":"education","lineage":["https://openalex.org/I166928557"]},{"id":"https://openalex.org/I4210133214","display_name":"IRCCS Ospedale San Raffaele","ror":"https://ror.org/039zxt351","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210133214","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I4210167348","display_name":"Abderrahmane Mami Hospital","ror":"https://ror.org/04w40b524","country_code":"TN","type":"healthcare","lineage":["https://openalex.org/I4210167348"]},{"id":"https://openalex.org/I63596082","display_name":"Tunis El Manar University","ror":"https://ror.org/029cgt552","country_code":"TN","type":"education","lineage":["https://openalex.org/I63596082"]}],"countries":["IT","TN"],"is_corresponding":false,"raw_author_name":"Henda Daroui","raw_affiliation_strings":["Mami Pneumology Hospital","University of Tunis El Manar , Tunis , Tunisia","B. Midouni); San Raffaele Scientific Institute, Milan, Italy","National Reference Laboratory for Mycobacteria, Ariana, Tunisia","University of Monastir, Monastir, Tunisia","University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mami Pneumology Hospital","institution_ids":["https://openalex.org/I4210167348"]},{"raw_affiliation_string":"University of Tunis El Manar , Tunis , Tunisia","institution_ids":["https://openalex.org/I63596082"]},{"raw_affiliation_string":"B. Midouni); San Raffaele Scientific Institute, Milan, Italy","institution_ids":["https://openalex.org/I4210133214"]},{"raw_affiliation_string":"National Reference Laboratory for Mycobacteria, Ariana, Tunisia","institution_ids":[]},{"raw_affiliation_string":"University of Monastir, Monastir, Tunisia","institution_ids":["https://openalex.org/I166928557"]},{"raw_affiliation_string":"University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,","institution_ids":["https://openalex.org/I63596082"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111842988","display_name":"Asma Ghariani","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I166928557","display_name":"University of Monastir","ror":"https://ror.org/00nhtcg76","country_code":"TN","type":"education","lineage":["https://openalex.org/I166928557"]},{"id":"https://openalex.org/I4210133214","display_name":"IRCCS Ospedale San Raffaele","ror":"https://ror.org/039zxt351","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210133214","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I63596082","display_name":"Tunis El Manar University","ror":"https://ror.org/029cgt552","country_code":"TN","type":"education","lineage":["https://openalex.org/I63596082"]}],"countries":["IT","TN"],"is_corresponding":false,"raw_author_name":"Asma Ghariani","raw_affiliation_strings":["University of Tunis El Manar , Tunis , Tunisia","B. Midouni); San Raffaele Scientific Institute, Milan, Italy","National Reference Laboratory for Mycobacteria, Ariana, Tunisia","University of Monastir, Monastir, Tunisia","University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tunis El Manar , Tunis , Tunisia","institution_ids":["https://openalex.org/I63596082"]},{"raw_affiliation_string":"B. Midouni); San Raffaele Scientific Institute, Milan, Italy","institution_ids":["https://openalex.org/I4210133214"]},{"raw_affiliation_string":"National Reference Laboratory for Mycobacteria, Ariana, Tunisia","institution_ids":[]},{"raw_affiliation_string":"University of Monastir, Monastir, Tunisia","institution_ids":["https://openalex.org/I166928557"]},{"raw_affiliation_string":"University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,","institution_ids":["https://openalex.org/I63596082"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112389935","display_name":"B. Midouni","orcid":"https://orcid.org/0000-0001-7585-0614","observed_orcids":["https://orcid.org/0000-0001-7585-0614"]},"institutions":[{"id":"https://openalex.org/I166928557","display_name":"University of Monastir","ror":"https://ror.org/00nhtcg76","country_code":"TN","type":"education","lineage":["https://openalex.org/I166928557"]},{"id":"https://openalex.org/I4210133214","display_name":"IRCCS Ospedale San Raffaele","ror":"https://ror.org/039zxt351","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210133214","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I63596082","display_name":"Tunis El Manar University","ror":"https://ror.org/029cgt552","country_code":"TN","type":"education","lineage":["https://openalex.org/I63596082"]}],"countries":["IT","TN"],"is_corresponding":false,"raw_author_name":"Basma Midouni","raw_affiliation_strings":["University of Tunis El Manar , Tunis , Tunisia","B. Midouni); San Raffaele Scientific Institute, Milan, Italy","National Reference Laboratory for Mycobacteria, Ariana, Tunisia","University of Monastir, Monastir, Tunisia","University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tunis El Manar , Tunis , Tunisia","institution_ids":["https://openalex.org/I63596082"]},{"raw_affiliation_string":"B. Midouni); San Raffaele Scientific Institute, Milan, Italy","institution_ids":["https://openalex.org/I4210133214"]},{"raw_affiliation_string":"National Reference Laboratory for Mycobacteria, Ariana, Tunisia","institution_ids":[]},{"raw_affiliation_string":"University of Monastir, Monastir, Tunisia","institution_ids":["https://openalex.org/I166928557"]},{"raw_affiliation_string":"University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,","institution_ids":["https://openalex.org/I63596082"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067487651","display_name":"Leila Essalah","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I166928557","display_name":"University of Monastir","ror":"https://ror.org/00nhtcg76","country_code":"TN","type":"education","lineage":["https://openalex.org/I166928557"]},{"id":"https://openalex.org/I4210133214","display_name":"IRCCS Ospedale San Raffaele","ror":"https://ror.org/039zxt351","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210133214","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I63596082","display_name":"Tunis El Manar University","ror":"https://ror.org/029cgt552","country_code":"TN","type":"education","lineage":["https://openalex.org/I63596082"]}],"countries":["IT","TN"],"is_corresponding":false,"raw_author_name":"Leila Essalah","raw_affiliation_strings":["B. Midouni); San Raffaele Scientific Institute, Milan, Italy","University of Tunis El Manar , Tunis , Tunisia","National Reference Laboratory for Mycobacteria, Ariana, Tunisia","University of Monastir, Monastir, Tunisia","University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"B. Midouni); San Raffaele Scientific Institute, Milan, Italy","institution_ids":["https://openalex.org/I4210133214"]},{"raw_affiliation_string":"University of Tunis El Manar , Tunis , Tunisia","institution_ids":["https://openalex.org/I63596082"]},{"raw_affiliation_string":"National Reference Laboratory for Mycobacteria, Ariana, Tunisia","institution_ids":[]},{"raw_affiliation_string":"University of Monastir, Monastir, Tunisia","institution_ids":["https://openalex.org/I166928557"]},{"raw_affiliation_string":"University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,","institution_ids":["https://openalex.org/I63596082"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055429918","display_name":"Emna Mehiri","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I166928557","display_name":"University of Monastir","ror":"https://ror.org/00nhtcg76","country_code":"TN","type":"education","lineage":["https://openalex.org/I166928557"]},{"id":"https://openalex.org/I4210133214","display_name":"IRCCS Ospedale San Raffaele","ror":"https://ror.org/039zxt351","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210133214","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I63596082","display_name":"Tunis El Manar University","ror":"https://ror.org/029cgt552","country_code":"TN","type":"education","lineage":["https://openalex.org/I63596082"]}],"countries":["IT","TN"],"is_corresponding":false,"raw_author_name":"Emna Mehiri","raw_affiliation_strings":["University of Tunis El Manar , Tunis , Tunisia","B. Midouni); San Raffaele Scientific Institute, Milan, Italy","National Reference Laboratory for Mycobacteria, Ariana, Tunisia","University of Monastir, Monastir, Tunisia","University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tunis El Manar , Tunis , Tunisia","institution_ids":["https://openalex.org/I63596082"]},{"raw_affiliation_string":"B. Midouni); San Raffaele Scientific Institute, Milan, Italy","institution_ids":["https://openalex.org/I4210133214"]},{"raw_affiliation_string":"National Reference Laboratory for Mycobacteria, Ariana, Tunisia","institution_ids":[]},{"raw_affiliation_string":"University of Monastir, Monastir, Tunisia","institution_ids":["https://openalex.org/I166928557"]},{"raw_affiliation_string":"University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,","institution_ids":["https://openalex.org/I63596082"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090984399","display_name":"Daniela Mar\u00eda Cirillo","orcid":"https://orcid.org/0000-0001-6415-1535","observed_orcids":["https://orcid.org/0000-0001-6415-1535"]},"institutions":[{"id":"https://openalex.org/I166928557","display_name":"University of Monastir","ror":"https://ror.org/00nhtcg76","country_code":"TN","type":"education","lineage":["https://openalex.org/I166928557"]},{"id":"https://openalex.org/I4210133214","display_name":"IRCCS Ospedale San Raffaele","ror":"https://ror.org/039zxt351","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210133214","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I63596082","display_name":"Tunis El Manar University","ror":"https://ror.org/029cgt552","country_code":"TN","type":"education","lineage":["https://openalex.org/I63596082"]}],"countries":["IT","TN"],"is_corresponding":false,"raw_author_name":"Daniela Maria Cirillo","raw_affiliation_strings":["B. Midouni); San Raffaele Scientific Institute, Milan, Italy","National Reference Laboratory for Mycobacteria, Ariana, Tunisia","University of Monastir, Monastir, Tunisia","University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"B. Midouni); San Raffaele Scientific Institute, Milan, Italy","institution_ids":["https://openalex.org/I4210133214"]},{"raw_affiliation_string":"National Reference Laboratory for Mycobacteria, Ariana, Tunisia","institution_ids":[]},{"raw_affiliation_string":"University of Monastir, Monastir, Tunisia","institution_ids":["https://openalex.org/I166928557"]},{"raw_affiliation_string":"University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,","institution_ids":["https://openalex.org/I63596082"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082605685","display_name":"Leila Slim Saidi","orcid":"https://orcid.org/0000-0002-4324-0579","observed_orcids":["https://orcid.org/0000-0002-4324-0579"]},"institutions":[{"id":"https://openalex.org/I166928557","display_name":"University of Monastir","ror":"https://ror.org/00nhtcg76","country_code":"TN","type":"education","lineage":["https://openalex.org/I166928557"]},{"id":"https://openalex.org/I4210133214","display_name":"IRCCS Ospedale San Raffaele","ror":"https://ror.org/039zxt351","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210133214","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I63596082","display_name":"Tunis El Manar University","ror":"https://ror.org/029cgt552","country_code":"TN","type":"education","lineage":["https://openalex.org/I63596082"]}],"countries":["IT","TN"],"is_corresponding":false,"raw_author_name":"Leila Slim Saidi","raw_affiliation_strings":["University of Tunis El Manar , Tunis , Tunisia","B. Midouni); San Raffaele Scientific Institute, Milan, Italy","National Reference Laboratory for Mycobacteria, Ariana, Tunisia","University of Monastir, Monastir, Tunisia","University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tunis El Manar , Tunis , Tunisia","institution_ids":["https://openalex.org/I63596082"]},{"raw_affiliation_string":"B. Midouni); San Raffaele Scientific Institute, Milan, Italy","institution_ids":["https://openalex.org/I4210133214"]},{"raw_affiliation_string":"National Reference Laboratory for Mycobacteria, Ariana, Tunisia","institution_ids":[]},{"raw_affiliation_string":"University of Monastir, Monastir, Tunisia","institution_ids":["https://openalex.org/I166928557"]},{"raw_affiliation_string":"University of Tunis El Manar, Tunis, Tunisia (I. Bouzouita,","institution_ids":["https://openalex.org/I63596082"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5090540589"],"corresponding_institution_ids":["https://openalex.org/I166928557","https://openalex.org/I4210133214","https://openalex.org/I63596082"],"apc_list":null,"apc_paid":null,"fwci":0.9713,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.72996327,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"25","issue":"3","first_page":"538","last_page":"546"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11316","display_name":"Mycobacterium research and diagnosis","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11381","display_name":"Infectious Diseases and Tuberculosis","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis","display_name":"Mycobacterium tuberculosis","score":0.949999988079071},{"id":"https://openalex.org/keywords/multidrug-resistant-tuberculosis","display_name":"multidrug-resistant tuberculosis","score":0.8669999837875366},{"id":"https://openalex.org/keywords/drug-resistant-strains","display_name":"drug-resistant strains","score":0.6940000057220459},{"id":"https://openalex.org/keywords/transmission","display_name":"transmission","score":0.6320000290870667},{"id":"https://openalex.org/keywords/core-genome-multilocus-sequence-typing","display_name":"core genome multilocus sequence typing","score":0.968999981880188},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"whole genome sequencing","score":0.8539999723434448},{"id":"https://openalex.org/keywords/tunisia","display_name":"Tunisia","score":0.4490000009536743},{"id":"https://openalex.org/keywords/tuberculosis-control","display_name":"tuberculosis control","score":0.5699999928474426}],"concepts":[{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.7899149656295776},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7245588302612305},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6982054710388184},{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.657466471195221},{"id":"https://openalex.org/C77434933","wikidata":"https://www.wikidata.org/wiki/Q4043440","display_name":"Multilocus sequence typing","level":4,"score":0.6362972855567932},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5037888884544373},{"id":"https://openalex.org/C114851261","wikidata":"https://www.wikidata.org/wiki/Q12147416","display_name":"Drug resistance","level":2,"score":0.44564804434776306},{"id":"https://openalex.org/C761482","wikidata":"https://www.wikidata.org/wiki/Q118093","display_name":"Transmission (telecommunications)","level":2,"score":0.43587011098861694},{"id":"https://openalex.org/C2781209916","wikidata":"https://www.wikidata.org/wiki/Q3215756","display_name":"Typing","level":2,"score":0.42628148198127747},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4227755069732666},{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.41202986240386963},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36274850368499756},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.28665339946746826},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17303955554962158},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11919447779655457},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008875","descriptor_name":"Middle Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":true},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012189","descriptor_name":"Retrospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014416","descriptor_name":"Tunisia","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018088","descriptor_name":"Tuberculosis, Multidrug-Resistant","qualifier_ui":"Q000266","qualifier_name":"history","is_major_topic":false},{"descriptor_ui":"D018088","descriptor_name":"Tuberculosis, Multidrug-Resistant","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D018088","descriptor_name":"Tuberculosis, Multidrug-Resistant","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D024901","descriptor_name":"Drug Resistance, Multiple, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049674","descriptor_name":"History, 21st Century","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055815","descriptor_name":"Young Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062486","descriptor_name":"Public Health Surveillance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.3201/eid2503.181370","doi":"https://doi.org/10.3201/eid2503.181370","is_oa":true,"landing_page_url":"https://doi.org/10.3201/eid2503.181370","pdf_url":"https://wwwnc.cdc.gov/eid/article/25/3/pdfs/18-1370.pdf","source":{"id":"https://openalex.org/S189281586","display_name":"Emerging infectious diseases","issn_l":"1080-6040","issn":["1080-6040","1080-6059"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315581","host_organization_name":"Centers for Disease Control and Prevention","host_organization_lineage":["https://openalex.org/P4310315581"],"host_organization_lineage_names":["Centers for Disease Control and Prevention"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Emerging Infectious Diseases","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:5389692","doi":null,"is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6390741","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6390741","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6390741","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Emerg Infect Dis","raw_type":"Text"},{"id":"pmid:30789128","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30789128","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Emerging infectious diseases","raw_type":"Historical Article"},{"id":"pmh:oai:doaj.org/article:d6d7446dd584475b9f0b454b0c8e7102","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/d6d7446dd584475b9f0b454b0c8e7102","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Emerging Infectious Diseases, Vol 25, Iss 3, Pp 547-550 (2019)","raw_type":"article"},{"id":"doi:10.60692/kw3gj-dsm06","doi":"https://doi.org/10.60692/kw3gj-dsm06","is_oa":true,"landing_page_url":"https://doi.org/10.60692/kw3gj-dsm06","pdf_url":null,"source":{"id":"https://openalex.org/S7407051682","display_name":"Greater South Information System","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.60692/mav6x-5xs47","doi":"https://doi.org/10.60692/mav6x-5xs47","is_oa":true,"landing_page_url":"https://doi.org/10.60692/mav6x-5xs47","pdf_url":null,"source":{"id":"https://openalex.org/S7407051682","display_name":"Greater South Information System","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.3201/eid2503.181370","doi":"https://doi.org/10.3201/eid2503.181370","is_oa":true,"landing_page_url":"https://doi.org/10.3201/eid2503.181370","pdf_url":"https://wwwnc.cdc.gov/eid/article/25/3/pdfs/18-1370.pdf","source":{"id":"https://openalex.org/S189281586","display_name":"Emerging infectious diseases","issn_l":"1080-6040","issn":["1080-6040","1080-6059"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315581","host_organization_name":"Centers for Disease Control and Prevention","host_organization_lineage":["https://openalex.org/P4310315581"],"host_organization_lineage_names":["Centers for Disease Control and Prevention"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Emerging Infectious Diseases","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.9763000011444092,"display_name":"Good health and well-being"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2913753189.pdf","grobid_xml":"https://content.openalex.org/works/W2913753189.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W88124981","https://openalex.org/W184305165","https://openalex.org/W237030633","https://openalex.org/W1434444598","https://openalex.org/W1548013724","https://openalex.org/W1647183974","https://openalex.org/W1964144195","https://openalex.org/W1973889825","https://openalex.org/W1975500098","https://openalex.org/W1987093848","https://openalex.org/W1991285832","https://openalex.org/W2028465016","https://openalex.org/W2028730399","https://openalex.org/W2038907536","https://openalex.org/W2052755852","https://openalex.org/W2065704395","https://openalex.org/W2081485160","https://openalex.org/W2083336723","https://openalex.org/W2087701389","https://openalex.org/W2109182328","https://openalex.org/W2121784475","https://openalex.org/W2127246184","https://openalex.org/W2131871678","https://openalex.org/W2133488722","https://openalex.org/W2134769405","https://openalex.org/W2136806802","https://openalex.org/W2150600032","https://openalex.org/W2154753506","https://openalex.org/W2168358002","https://openalex.org/W2179285301","https://openalex.org/W2219198380","https://openalex.org/W2294783954","https://openalex.org/W2300194011","https://openalex.org/W2306683617","https://openalex.org/W2308769335","https://openalex.org/W2344180224","https://openalex.org/W2404638839","https://openalex.org/W2410301264","https://openalex.org/W2411623499","https://openalex.org/W2429301710","https://openalex.org/W2469237499","https://openalex.org/W2539321774","https://openalex.org/W2778128498","https://openalex.org/W2779510789","https://openalex.org/W4247403759"],"related_works":["https://openalex.org/W2768467894","https://openalex.org/W2558519010","https://openalex.org/W2089517887","https://openalex.org/W3184715093","https://openalex.org/W4384524954","https://openalex.org/W4412694798","https://openalex.org/W4404803072","https://openalex.org/W3120061547","https://openalex.org/W4406685728","https://openalex.org/W3130869322"],"abstract_inverted_index":{"To":[0],"investigate":[1],"transmission":[2,36],"of":[3,6],"drug-resistant":[4],"strains":[5,18,28],"Mycobacterium":[7],"tuberculosis":[8],"in":[9],"Tunisia,":[10],"we":[11],"performed":[12],"whole-genome":[13],"sequencing":[14,42],"on":[15],"46":[16],"multidrug-resistant":[17],"isolated":[19],"during":[20],"2012-2016.":[21],"Core-genome":[22],"multilocus":[23],"sequence":[24],"typing":[25],"grouped":[26],"30":[27],"(65.2%)":[29],"into":[30],"3":[31],"clusters,":[32],"indicating":[33],"extensive":[34],"recent":[35],"and":[37],"Haarlem":[38],"clone":[39],"predominance.":[40],"Whole-genome":[41],"might":[43],"help":[44],"public":[45],"health":[46],"services":[47],"undertake":[48],"appropriate":[49],"control":[50],"actions.":[51]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2026-11-08T12:12:28.789561","created_date":"2019-02-21T00:00:00"}
