{"id":"https://openalex.org/W2913464964","doi":"https://doi.org/10.1109/icenco.2018.8636130","title":"Improving Standard Progressive Multiple Sequence Alignment by Using Multithreading Techniques","display_name":"Improving Standard Progressive Multiple Sequence Alignment by Using Multithreading Techniques","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2913464964","doi":"https://doi.org/10.1109/icenco.2018.8636130","mag":"2913464964"},"language":"en","primary_location":{"id":"doi:10.1109/icenco.2018.8636130","doi":"https://doi.org/10.1109/icenco.2018.8636130","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icenco.2018.8636130","pdf_url":null,"source":{"id":"https://openalex.org/S4306418976","display_name":"International Computer Engineering Conference","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 14th International Computer Engineering Conference (ICENCO)","raw_type":"proceedings-article"},"volume":null,"type":"conference-paper","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057693408","display_name":"Eman Mohamed","orcid":"https://orcid.org/0000-0001-6575-9614","observed_orcids":["https://orcid.org/0000-0001-6575-9614"]},"institutions":[{"id":"https://openalex.org/I63601056","display_name":"Menoufia University","ror":"https://ror.org/05sjrb944","country_code":"EG","type":"education","lineage":["https://openalex.org/I63601056"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Eman M. Mohamed","raw_affiliation_strings":["Department of Computer Science, Menofia University, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Menofia University, Egypt","institution_ids":["https://openalex.org/I63601056"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029744197","display_name":"Hamdy M. Mousa","orcid":"https://orcid.org/0000-0001-9503-9124","observed_orcids":["https://orcid.org/0000-0001-9503-9124"]},"institutions":[{"id":"https://openalex.org/I63601056","display_name":"Menoufia University","ror":"https://ror.org/05sjrb944","country_code":"EG","type":"education","lineage":["https://openalex.org/I63601056"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Hamdy M. Mousa","raw_affiliation_strings":["Department of Computer Science, Menofia University, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Menofia University, Egypt","institution_ids":["https://openalex.org/I63601056"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053645124","display_name":"Arabi El-Said Keshk","orcid":"https://orcid.org/0000-0002-8389-7989","observed_orcids":["https://orcid.org/0000-0002-8389-7989"]},"institutions":[{"id":"https://openalex.org/I63601056","display_name":"Menoufia University","ror":"https://ror.org/05sjrb944","country_code":"EG","type":"education","lineage":["https://openalex.org/I63601056"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Arabi E. keshk","raw_affiliation_strings":["Department of Computer Science, Menofia University, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Menofia University, Egypt","institution_ids":["https://openalex.org/I63601056"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I63601056"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":93},"biblio":{"volume":"4","issue":null,"first_page":"156","last_page":"161"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9550999999046326,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9550999999046326,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.014000000432133675,"subfield":{"id":"https://openalex.org/subfields/2614","display_name":"Theoretical Computer Science"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.013899999670684338,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"multiple sequence alignment","score":0.9729999899864197},{"id":"https://openalex.org/keywords/progressive-alignment","display_name":"progressive alignment","score":0.9629999995231628},{"id":"https://openalex.org/keywords/protein-sequences","display_name":"protein sequences","score":0.7089999914169312},{"id":"https://openalex.org/keywords/multithreading","display_name":"multithreading","score":0.9549999833106995},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"parallel computing","score":0.7059999704360962},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.6740000247955322},{"id":"https://openalex.org/keywords/execution-time-reduction","display_name":"execution time reduction","score":0.7739999890327454},{"id":"https://openalex.org/keywords/bioinformatics-algorithms","display_name":"bioinformatics algorithms","score":0.4650000035762787}],"concepts":[{"id":"https://openalex.org/C201410400","wikidata":"https://www.wikidata.org/wiki/Q1064412","display_name":"Multithreading","level":3,"score":0.8908529877662659},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7497628927230835},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5707222819328308},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5506800413131714},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.4405362606048584},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.43764346837997437},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.4184715449810028},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.39037418365478516},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.33552539348602295},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.16980493068695068},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.149920254945755},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1353137195110321},{"id":"https://openalex.org/C138101251","wikidata":"https://www.wikidata.org/wiki/Q213092","display_name":"Thread (computing)","level":2,"score":0.10699877142906189},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07217204570770264},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icenco.2018.8636130","doi":"https://doi.org/10.1109/icenco.2018.8636130","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icenco.2018.8636130","pdf_url":null,"source":{"id":"https://openalex.org/S4306418976","display_name":"International Computer Engineering Conference","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 14th International Computer Engineering Conference (ICENCO)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1496346569","https://openalex.org/W1519266993","https://openalex.org/W1527979595","https://openalex.org/W1590240800","https://openalex.org/W1603947474","https://openalex.org/W1969153299","https://openalex.org/W2004178884","https://openalex.org/W2010475179","https://openalex.org/W2022697156","https://openalex.org/W2024759417","https://openalex.org/W2033339460","https://openalex.org/W2053238889","https://openalex.org/W2061990781","https://openalex.org/W2074231493","https://openalex.org/W2092672051","https://openalex.org/W2097706568","https://openalex.org/W2106882534","https://openalex.org/W2116022625","https://openalex.org/W2119270998","https://openalex.org/W2126332379","https://openalex.org/W2127322768","https://openalex.org/W2134473239","https://openalex.org/W2136570298","https://openalex.org/W2140872496","https://openalex.org/W2141885858","https://openalex.org/W2154730959","https://openalex.org/W2155518645","https://openalex.org/W2160378127","https://openalex.org/W2167381464","https://openalex.org/W2170831688","https://openalex.org/W2258865027","https://openalex.org/W2606325896","https://openalex.org/W2706430963","https://openalex.org/W2885977680","https://openalex.org/W3140628377","https://openalex.org/W4252879122","https://openalex.org/W4320301318"],"related_works":["https://openalex.org/W2001134403","https://openalex.org/W2170896626","https://openalex.org/W2783755334","https://openalex.org/W2611515252","https://openalex.org/W7098065978","https://openalex.org/W2912905318","https://openalex.org/W32224622","https://openalex.org/W2141747524","https://openalex.org/W2073201955","https://openalex.org/W1555529056"],"abstract_inverted_index":{"One":[0],"of":[1,18,59,89],"the":[2,9,78,103],"most":[3,44],"important":[4],"goals":[5],"in":[6,26],"bioinformatics":[7],"is":[8,31,72,106],"ideal":[10],"alignment":[11,29,63],"among":[12],"three":[13],"or":[14,21],"even":[15],"more":[16],"sequences":[17,66],"Protein,":[19],"DNA":[20],"RNA.":[22],"The":[23],"urgent":[24],"problem":[25],"multiple":[27],"sequence":[28],"(MSA)":[30],"to":[32],"maximize":[33],"accuracy":[34],"and":[35,40,110],"decreasing":[36,77],"execution":[37],"time.":[38],"Progressive":[39,62],"Iterative":[41],"techniques":[42],"are":[43],"extensively":[45],"used":[46],"for":[47,76,108],"solving":[48],"MSA":[49,58,91],"challenge.":[50],"In":[51,81],"this":[52,82],"paper,":[53,83],"we":[54,84],"focus":[55],"on":[56,94],"progressive":[57,90],"protein":[60],"sequences.":[61,112],"with":[64],"large-scale":[65,109],"will":[67],"be":[68],"time-consuming":[69],"so":[70],"parallelization":[71],"a":[73,86],"key":[74],"approach":[75,105],"time":[79],"execution.":[80],"present":[85],"parallel":[87],"implementation":[88],"based":[92],"totally":[93],"java":[95],"multithreading":[96],"strategies.":[97],"Experimental":[98],"results":[99],"have":[100],"shown":[101],"that":[102],"proposed":[104],"efficient":[107],"shorter":[111]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-10-16T09:59:22.235173","created_date":"2019-02-21T00:00:00"}