{"id":"https://openalex.org/W2913111471","doi":"https://doi.org/10.1128/msystems.00337-18","title":"Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease","display_name":"Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease","publication_year":2019,"publication_date":"2019-02-11","ids":{"openalex":"https://openalex.org/W2913111471","doi":"https://doi.org/10.1128/msystems.00337-18","mag":"2913111471","pmid":"https://pubmed.ncbi.nlm.nih.gov/30801026","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/6372841"},"language":"en","primary_location":{"id":"doi:10.1128/msystems.00337-18","doi":"https://doi.org/10.1128/msystems.00337-18","is_oa":true,"landing_page_url":"https://doi.org/10.1128/msystems.00337-18","pdf_url":"https://msystems.asm.org/content/msys/4/1/e00337-18.full.pdf","source":{"id":"https://openalex.org/S4210181942","display_name":"mSystems","issn_l":"2379-5077","issn":["2379-5077"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"mSystems","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://msystems.asm.org/content/msys/4/1/e00337-18.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082564115","display_name":"Robert H. Mills","orcid":"https://orcid.org/0000-0002-0749-9524","observed_orcids":["https://orcid.org/0000-0002-0749-9524"]},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert H. Mills","raw_affiliation_strings":["Center for Microbiome Innovation, University of California, San Diego, San Diego, California, USA","Department of Pediatrics, and Department of Computer Science and Engineering, University of California, San Diego, San Diego, California, USA","Department of Pharmacology, University of California, San Diego, San Diego, California, USA","Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San Diego, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbiome Innovation, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Pediatrics, and Department of Computer Science and Engineering, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Pharmacology, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024143614","display_name":"Yoshiki V\u00e1zquez\u2010Baeza","orcid":"https://orcid.org/0000-0001-6014-2009","observed_orcids":["https://orcid.org/0000-0001-6014-2009"]},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yoshiki V\u00e1zquez-Baeza","raw_affiliation_strings":["Department of Pediatrics, and Department of Computer Science and Engineering, University of California, San Diego, San Diego, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, and Department of Computer Science and Engineering, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064767131","display_name":"Qiyun Zhu","orcid":"https://orcid.org/0000-0002-3568-6271","observed_orcids":["https://orcid.org/0000-0002-3568-6271"]},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qiyun Zhu","raw_affiliation_strings":["Department of Pediatrics, and Department of Computer Science and Engineering, University of California, San Diego, San Diego, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, and Department of Computer Science and Engineering, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066665482","display_name":"Lingjing Jiang","orcid":"https://orcid.org/0000-0001-8706-2850","observed_orcids":["https://orcid.org/0000-0001-8706-2850"]},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lingjing Jiang","raw_affiliation_strings":["Department of Family Medicine and Public Health, University of California, San Diego, San Diego, California, USA","Department of Pediatrics, and Department of Computer Science and Engineering, University of California, San Diego, San Diego, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Family Medicine and Public Health, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Pediatrics, and Department of Computer Science and Engineering, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071919923","display_name":"James Gaffney","orcid":"https://orcid.org/0000-0003-2186-0408","observed_orcids":["https://orcid.org/0000-0003-2186-0408"]},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Gaffney","raw_affiliation_strings":["Department of Pediatrics, and Department of Computer Science and Engineering, University of California, San Diego, San Diego, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, and Department of Computer Science and Engineering, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087126302","display_name":"Greg C. Humphrey","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Greg Humphrey","raw_affiliation_strings":["Department of Pediatrics, and Department of Computer Science and Engineering, University of California, San Diego, San Diego, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, and Department of Computer Science and Engineering, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070236619","display_name":"Larry L. Smarr","orcid":"https://orcid.org/0000-0003-2003-7700","observed_orcids":["https://orcid.org/0000-0003-2003-7700"]},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Larry Smarr","raw_affiliation_strings":["California Institute for Telecommunications and Information Technology, University of California, San Diego, San Diego, California, USA","Center for Microbiome Innovation, University of California, San Diego, San Diego, California, USA","Department of Computer Science and Engineering, University of California, San Diego, San Diego, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"California Institute for Telecommunications and Information Technology, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Center for Microbiome Innovation, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033881627","display_name":"Rob D. Knight","orcid":"https://orcid.org/0000-0002-0975-9019","observed_orcids":["https://orcid.org/0000-0002-0975-9019","https://orcid.org/0000-0001-7531-0087"]},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rob Knight","raw_affiliation_strings":["Center for Microbiome Innovation, University of California, San Diego, San Diego, California, USA","Department of Pediatrics, and Department of Computer Science and Engineering, University of California, San Diego, San Diego, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbiome Innovation, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Pediatrics, and Department of Computer Science and Engineering, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101462984","display_name":"David J. Gonzalez","orcid":"https://orcid.org/0000-0003-1423-5970","observed_orcids":["https://orcid.org/0000-0003-1423-5970"]},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David J. Gonzalez","raw_affiliation_strings":["Center for Microbiome Innovation, University of California, San Diego, San Diego, California, USA","Department of Pharmacology, University of California, San Diego, San Diego, California, USA","Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San Diego, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbiome Innovation, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Pharmacology, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San Diego, California, USA","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5033881627","https://openalex.org/A5101462984"],"corresponding_institution_ids":["https://openalex.org/I36258959"],"apc_list":{"value":3500,"currency":"USD","value_usd":3500},"apc_paid":{"value":3500,"currency":"USD","value_usd":3500},"fwci":3.1149,"has_fulltext":true,"cited_by_count":59,"citation_normalized_percentile":{"value":0.9322575,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"4","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9595000147819519,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9595000147819519,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10134","display_name":"Inflammatory Bowel Disease","score":0.025499999523162842,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.002199999988079071,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crohn-s-disease","display_name":"Crohn's disease","score":0.8970000147819519},{"id":"https://openalex.org/keywords/metaproteomics","display_name":"metaproteomics","score":0.781000018119812},{"id":"https://openalex.org/keywords/metagenomics","display_name":"metagenomics","score":0.9769999980926514},{"id":"https://openalex.org/keywords/gut-microbiota","display_name":"gut microbiota","score":0.7170000076293945},{"id":"https://openalex.org/keywords/fecal-microbiota","display_name":"fecal microbiota","score":0.722000002861023},{"id":"https://openalex.org/keywords/colonic-inflammation","display_name":"colonic inflammation","score":0.7419999837875366}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8803333044052124},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6879643797874451},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.6379227042198181},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6240427494049072},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.5564438104629517},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5418177247047424},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.48895466327667236},{"id":"https://openalex.org/C199465337","wikidata":"https://www.wikidata.org/wiki/Q6823168","display_name":"Metaproteomics","level":4,"score":0.48052868247032166},{"id":"https://openalex.org/C2778292693","wikidata":"https://www.wikidata.org/wiki/Q22328664","display_name":"Calprotectin","level":4,"score":0.4513307809829712},{"id":"https://openalex.org/C2777165150","wikidata":"https://www.wikidata.org/wiki/Q269334","display_name":"Dysbiosis","level":3,"score":0.4363778531551361},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.40951526165008545},{"id":"https://openalex.org/C2778260677","wikidata":"https://www.wikidata.org/wiki/Q917447","display_name":"Inflammatory bowel disease","level":3,"score":0.37764087319374084},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.334292471408844},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16487964987754822},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.09442204236984253}],"mesh":[],"locations_count":9,"locations":[{"id":"doi:10.1128/msystems.00337-18","doi":"https://doi.org/10.1128/msystems.00337-18","is_oa":true,"landing_page_url":"https://doi.org/10.1128/msystems.00337-18","pdf_url":"https://msystems.asm.org/content/msys/4/1/e00337-18.full.pdf","source":{"id":"https://openalex.org/S4210181942","display_name":"mSystems","issn_l":"2379-5077","issn":["2379-5077"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"mSystems","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:5378341","doi":null,"is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6372841","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6372841","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6372841","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"mSystems","raw_type":"Text"},{"id":"pmid:30801026","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30801026","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"mSystems","raw_type":"Journal Article"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt5281m43p","doi":null,"is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/5281m43p","pdf_url":"https://escholarship.org/uc/item/5281m43p","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"mSystems, vol 4, iss 1","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:15148f9d8148465693d93ecf4a9779c5","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/15148f9d8148465693d93ecf4a9779c5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"mSystems, Vol 4, Iss 1 (2019)","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:5c788f6fed7d4942b1ea39ec69c90a71","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/5c788f6fed7d4942b1ea39ec69c90a71","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"mSystems, Vol 4, Iss 1, p e00337-18 (2019)","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:b907b7cb9f5d4918b7ae946feea99386","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/b907b7cb9f5d4918b7ae946feea99386","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"mSystems, Vol 4, Iss 1 (2019)","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt5281m43p","doi":null,"is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/5281m43p","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"mSystems, vol 4, iss 1","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1128/msystems.00337-18","doi":"https://doi.org/10.1128/msystems.00337-18","is_oa":true,"landing_page_url":"https://doi.org/10.1128/msystems.00337-18","pdf_url":"https://msystems.asm.org/content/msys/4/1/e00337-18.full.pdf","source":{"id":"https://openalex.org/S4210181942","display_name":"mSystems","issn_l":"2379-5077","issn":["2379-5077"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"mSystems","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.9537000060081482,"display_name":"Good health and well-being"}],"study_designs":[{"id":"https://openalex.org/study-designs/case-report","display_name":"Case Report"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320316545","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2913111471.pdf","grobid_xml":"https://content.openalex.org/works/W2913111471.grobid-xml"},"referenced_works_count":87,"referenced_works":["https://openalex.org/W8935401","https://openalex.org/W1511402219","https://openalex.org/W1580280659","https://openalex.org/W1970717748","https://openalex.org/W1979921905","https://openalex.org/W1985524011","https://openalex.org/W1993150792","https://openalex.org/W1993450321","https://openalex.org/W1995925875","https://openalex.org/W1996588166","https://openalex.org/W2006189460","https://openalex.org/W2006986579","https://openalex.org/W2012626734","https://openalex.org/W2016097940","https://openalex.org/W2020344769","https://openalex.org/W2023610631","https://openalex.org/W2026465178","https://openalex.org/W2027960462","https://openalex.org/W2030702588","https://openalex.org/W2037124948","https://openalex.org/W2037279825","https://openalex.org/W2045204781","https://openalex.org/W2048280438","https://openalex.org/W2063208438","https://openalex.org/W2064745516","https://openalex.org/W2072970694","https://openalex.org/W2085284704","https://openalex.org/W2090711753","https://openalex.org/W2096057003","https://openalex.org/W2096642488","https://openalex.org/W2097107919","https://openalex.org/W2097124003","https://openalex.org/W2097463865","https://openalex.org/W2097804645","https://openalex.org/W2100688872","https://openalex.org/W2102461176","https://openalex.org/W2105857910","https://openalex.org/W2107031757","https://openalex.org/W2111147163","https://openalex.org/W2113679889","https://openalex.org/W2123324242","https://openalex.org/W2123347941","https://openalex.org/W2123886946","https://openalex.org/W2125626931","https://openalex.org/W2130157550","https://openalex.org/W2131186249","https://openalex.org/W2136563184","https://openalex.org/W2140282132","https://openalex.org/W2141125135","https://openalex.org/W2143485490","https://openalex.org/W2146098289","https://openalex.org/W2147723262","https://openalex.org/W2153132589","https://openalex.org/W2161377277","https://openalex.org/W2164175488","https://openalex.org/W2168191341","https://openalex.org/W2168270559","https://openalex.org/W2170960877","https://openalex.org/W2171585790","https://openalex.org/W2175093233","https://openalex.org/W2178043251","https://openalex.org/W2282772932","https://openalex.org/W2334099820","https://openalex.org/W2337025637","https://openalex.org/W2340761255","https://openalex.org/W2344476233","https://openalex.org/W2413846149","https://openalex.org/W2461711360","https://openalex.org/W2526956161","https://openalex.org/W2587154501","https://openalex.org/W2588997555","https://openalex.org/W2592811885","https://openalex.org/W2624877602","https://openalex.org/W2701219859","https://openalex.org/W2741716918","https://openalex.org/W2752984803","https://openalex.org/W2754579667","https://openalex.org/W2766358903","https://openalex.org/W2770452796","https://openalex.org/W2770933704","https://openalex.org/W2786139769","https://openalex.org/W2794407684","https://openalex.org/W2803300167","https://openalex.org/W2883427056","https://openalex.org/W2885188733","https://openalex.org/W2887770030","https://openalex.org/W4300870773"],"related_works":["https://openalex.org/W2912939143","https://openalex.org/W2938809374","https://openalex.org/W3013557327","https://openalex.org/W2097804645","https://openalex.org/W7098117913","https://openalex.org/W4223925726","https://openalex.org/W143166146","https://openalex.org/W7120761744","https://openalex.org/W2137979335","https://openalex.org/W4406617072"],"abstract_inverted_index":{"A":[0],"majority":[1],"of":[2,45,53,68,83,98,129],"current":[3],"microbiome":[4,134],"research":[5],"relies":[6],"heavily":[7],"on":[8],"DNA":[9,35],"analysis.":[10],"However,":[11],"as":[12,57],"the":[13,18,46,51,90,99,109,121,125],"field":[14],"moves":[15],"toward":[16],"understanding":[17],"microbial":[19],"functions":[20],"related":[21],"to":[22,30,37],"healthy":[23],"and":[24,55,117,127],"disease":[25],"states,":[26],"it":[27],"is":[28],"critical":[29],"evaluate":[31],"how":[32],"changes":[33,38],"in":[34,39,64,89],"relate":[36],"proteins,":[40],"which":[41],"are":[42],"functional":[43],"units":[44],"genome.":[47],"This":[48,112],"study":[49,67,114],"tracked":[50],"abundance":[52],"genes":[54,126],"proteins":[56,128],"they":[58],"fluctuated":[59],"during":[60],"various":[61],"inflammatory":[62],"states":[63],"a":[65,69,80,130],"4.5-year":[66],"patient":[70],"with":[71,136],"colonic":[72],"Crohn's":[73],"disease.":[74],"Our":[75],"results":[76],"indicate":[77],"that":[78],"despite":[79],"low":[81],"level":[82],"correlation,":[84],"taxonomic":[85],"associations":[86,103],"were":[87,104],"consistent":[88],"two":[91],"data":[92,100],"types.":[93],"While":[94],"there":[95],"was":[96],"overlap":[97],"types,":[101],"several":[102],"uniquely":[105],"discovered":[106],"by":[107],"analyzing":[108],"metaproteome":[110],"component.":[111],"case":[113],"provides":[115],"unique":[116],"important":[118],"insights":[119],"into":[120],"fundamental":[122],"relationship":[123],"between":[124],"single":[131],"individual's":[132],"fecal":[133],"associated":[135],"clinical":[137],"consequences.":[138]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":1}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2019-02-21T00:00:00"}
